Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0001688

Physical Location & Seq

Genomic Coordinates Forward (+)

14685847 .. 14687076

Gene Structure 1230 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000007219

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1080 bp

ATGGAAGCAGTTACAGAATTGGATGAAGCATCTCTAAGAGGCCAAGCAGATGTATGGAAGTACATGCTCGGCTTTGCAGATTCCATGGCTTTAAAATCTGCTGTGGAGCTCCGGATACCAGATATCATACACTCCCGTGGTCATGCATTGACTTTGTCTGAAATTGCCTCCTCCTTCGACTCTACATCACCCTCTCCAGACATCACATGCCTCTCTCGCATCATGCGGTTGCTGGTTCGCAGGAACATCTTCACTGCACATCCTGATGGTGGAGATTCCGGAGAAACCCTCTACGGGTTGACTCACACGTCTGGATGGCTTTTACATGACTCGGAGTTCACTCTAGCTCCGATGGTTCTCATGGAGACAAATCCTACTCTAATGGAGCCATGGCACTGTTTCAGCCAATGCGTCAAGCAAGGCGCCCCATGCGCCTTTGAGAAAGCGCATGGCCGTAACATTTGGCAGTTCTTCGCTGAAAAACCCGAGTTCAACCGATTGTTCAACGATGGCATGTCGTGCACCGCTAAGATTACAATGAAAGCGATACTCACGGCATATAAGGGTGGGTTTGATAACGTGGCAACACTGGTGGATGTTGGTGGTGGGACTGGAAGCGCAGTGGCGGAGATTGTGAAGTTGTATCCCAGCATTAAGGGCATTAACTTTGATCTACCACATGTAGTTGCAATAGCGCCGGAGTACCATGGGGTGTCACATGTTGGAGGTGACATGTTTGGTGAGGGCAATATTCCGAACACTGATGCAATTTTCATGAAGTGGATTATGCACGACTGGAGTGACAACGATTGCGTCAAGATATTGAAAAACTGTCGAAAGGCGATACCGGAGAGAAGTGGCAAGGTGATTATTGTGGACGTTGTTCTAGAGCCAAATGGTGATGGCATGTTCGACGACACAGGCTTGGTGTTTGATTTGCTAATGATTGCACACGCCTCAGGTGGAAAGGAGAGGACTGAGAGTGAATGGAAGAAGGTGTTGGAACAAGCAGGCTTCCCTCGTTACAAAATCATCAAAATTCCAGCTTTATCGTCCATTATTGAGGCCTACCCCGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dimerisation Methyltransf_2

Protein Analysis

360

Amino Acids

39.5

Weight (kDa)

5.46

Isoelectric Point (pI)

37.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dimerisation	PF08100	19 - 109	1.7e-19	O-methyltransferase dimerisation domain
Methyltransf_2	PF00891	131 - 339	2.7e-63	O-methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001688)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g17220 FvH4_6g45070
malus_domestica	MD09G1089200.v1.1 MD09G1089800.v1.1 MD09G1090100.v1.1 MD09G1090200.v1.1 MD17G1079200.v1.1
prunus_persica	Prupe.3G235300_v2.0.a1 Prupe.3G235500_v2.0.a1
pyrus_communis	pycom09g01490 pycom17g07830
rosa_chinensis	RchiOBHm_Chr1g0324661 RchiOBHm_Chr2g0139131 RchiOBHm_Chr4g0427641 RchiOBHm_Chr4g0427651
rosa_laevigata	RLG00000007219 RLG00000007220 RLG00000019790 RLG00000021346 RLG00000021347
rosa_multiflora	Rmu_co8132516.1_g000001 Rmu_sc0001803.1_g000030 Rmu_sc0003399.1_g000006 Rmu_sc0009627.1_g000012 Rmu_sc0009627.1_g000013
rosa_roxburghii	Rroxscaffold_2G00105640 Rroxscaffold_5G00369270 Rroxscaffold_5G00369300
rosa_rugosa	Rorug02G0354700 Rorug02G0498000 Rorug04G0219000
rosa_samantha	Rh1CG065100 Rh1DG069400 Rh1DG070200 Rh2AG405100 Rh2BG415000 Rh2CG391300 Rh2DG424900 Rh4AG275500 Rh4BG281400 Rh4BG281500 Rh4CG296800 Rh4CG296900 Rh4DG278800 Rh4DG278900
rosa_wichuraiana	Rw1G005480 Rw2G033080 Rw4G023890 Rw4G023900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	307
AccB1I	GGYRCC	1 cut(s)	422
AccIII	TCCGGA	2 cut(s)	111, 278
AciI	CCGC	3 cut(s)	226, 525, 626
AcoI	YGGCCR	1 cut(s)	451
AcsI	RAATTY	1 cut(s)	1038
AcyI	GRCGYC	1 cut(s)	423
AfaI	GTAC	2 cut(s)	62, 704
AfiI	CCNNNNNNNGG	2 cut(s)	269, 294
AflIII	ACRYGT	4 cut(s)	306, 679, 718, 732
AgsI	TTSAA	3 cut(s)	493, 505, 826
AjiI	CACGTC	1 cut(s)	309
AjuI	GAANNNNNNNTTGG	2 cut(s)	983, 1015
AleI	CACNNNNGTG	1 cut(s)	135
AluBI	AGCT	3 cut(s)	109, 347, 1046
AluI	AGCT	3 cut(s)	109, 347, 1046
Alw21I	GWGCWC	2 cut(s)	111, 524
Alw26I	GTCTC	1 cut(s)	359
Alw44I	GTGCAC	1 cut(s)	520
Ama87I	CYCGRG	1 cut(s)	485
Aor13HI	TCCGGA	2 cut(s)	111, 278
AoxI	GGCC	3 cut(s)	40, 451, 1065
ApaLI	GTGCAC	1 cut(s)	520
ApoI	RAATTY	1 cut(s)	1038
Asp700I	GAANNNNTTC	1 cut(s)	248
AspLEI	GCGC	5 cut(s)	425, 434, 448, 620, 697
AsuHPI	GGTGA	5 cut(s)	180, 740, 752, 877, 911
AvaI	CYCGRG	1 cut(s)	485
AxyI	CCTNAGG	1 cut(s)	958
BaeGI	GKGCMC	1 cut(s)	524
BanI	GGYRCC	1 cut(s)	422
BanII	GRGCYC	1 cut(s)	111
Bbv12I	GWGCWC	2 cut(s)	111, 524
BccI	CCATC	5 cut(s)	260, 309, 346, 503, 896
BceAI	ACGGC	2 cut(s)	438, 570
BciVI	GTATCC	2 cut(s)	108, 654
BcoDI	GTCTC	1 cut(s)	359
BfaI	CTAG	2 cut(s)	344, 887
BfoI	RGCGCY	2 cut(s)	426, 698
BfuI	GTATCC	2 cut(s)	108, 654
BmeT110I	CYCGRG	1 cut(s)	485
BmgBI	CACGTC	1 cut(s)	309
BmiI	GGNNCC	2 cut(s)	387, 424
BmsI	GCATC	3 cut(s)	38, 228, 754
BplI	GAGNNNNNCTC	2 cut(s)	273, 305
BpmI	CTGGAG	2 cut(s)	180, 817
BsaHI	GRCGYC	1 cut(s)	423
BsaJI	CCNNGG	4 cut(s)	84, 136, 389, 706
BsaWI	WCCGGW	3 cut(s)	111, 278, 847
BsaXI	ACNNNNNCTCC	2 cut(s)	331, 361
Bsc4I	CCNNNNNNNGG	2 cut(s)	269, 294
Bse1I	ACTGG	3 cut(s)	594, 616, 800
Bse21I	CCTNAGG	1 cut(s)	958
BseAI	TCCGGA	2 cut(s)	111, 278
BseDI	CCNNGG	4 cut(s)	84, 136, 389, 706
BseGI	GGATG	4 cut(s)	28, 259, 320, 601
BseLI	CCNNNNNNNGG	2 cut(s)	269, 294
BseMII	CTCAG	2 cut(s)	969, 972
BseNI	ACTGG	3 cut(s)	594, 616, 800
BseRI	GAGGAG	1 cut(s)	160
BseSI	GKGCMC	1 cut(s)	524
BseYI	CCCAGC	1 cut(s)	647
BsgI	GTGCAG	1 cut(s)	240
BshFI	GGCC	3 cut(s)	42, 453, 1067
BshNI	GGYRCC	1 cut(s)	422
BsiHKAI	GWGCWC	2 cut(s)	111, 524
BsiHKCI	CYCGRG	1 cut(s)	485
BsiSI	CCGG	4 cut(s)	112, 279, 698, 848
BslFI	GGGAC	1 cut(s)	622
BslI	CCNNNNNNNGG	2 cut(s)	269, 294
BsmAI	GTCTC	1 cut(s)	359
BsmFI	GGGAC	1 cut(s)	622
BsnI	GGCC	3 cut(s)	42, 453, 1067
BsoBI	CYCGRG	1 cut(s)	485
Bsp1286I	GDGCHC	2 cut(s)	111, 524
Bsp13I	TCCGGA	2 cut(s)	111, 278
Bsp143I	GATC	1 cut(s)	670
Bsp19I	CCATGG	3 cut(s)	84, 389, 706
BspACI	CCGC	3 cut(s)	226, 525, 626
BspANI	GGCC	3 cut(s)	42, 453, 1067
BspCNI	CTCAG	2 cut(s)	970, 971
BspEI	TCCGGA	2 cut(s)	111, 278
BspHI	TCATGA	1 cut(s)	774
BspLI	GGNNCC	2 cut(s)	387, 424
BspT107I	GGYRCC	1 cut(s)	422
BsrI	ACTGG	3 cut(s)	594, 616, 800
BssECI	CCNNGG	4 cut(s)	84, 136, 389, 706
BssMI	GATC	1 cut(s)	670
BssNI	GRCGYC	1 cut(s)	423
BssT1I	CCWWGG	3 cut(s)	84, 389, 706
Bst4CI	ACNGT	2 cut(s)	398, 833
BstACI	GRCGYC	1 cut(s)	423
BstAPI	GCANNNNNTGC	1 cut(s)	519
BstC8I	GCNNGC	1 cut(s)	1012
BstDEI	CTNAG	4 cut(s)	35, 528, 958, 978
BstDSI	CCRYGG	4 cut(s)	84, 136, 389, 706
BstF5I	GGATG	4 cut(s)	28, 259, 320, 601
BstH2I	RGCGCY	2 cut(s)	426, 698
BstHHI	GCGC	5 cut(s)	425, 434, 448, 620, 697
BstKTI	GATC	1 cut(s)	673
BstMAI	GTCTC	1 cut(s)	359
BstMBI	GATC	1 cut(s)	670
BstMWI	GCNNNNNNNGC	5 cut(s)	216, 429, 431, 519, 657
BstNSI	RCATGY	7 cut(s)	67, 210, 517, 683, 722, 736, 910
BstSLI	GKGCMC	1 cut(s)	524
Bsu36I	CCTNAGG	1 cut(s)	958
BsuI	GTATCC	2 cut(s)	108, 654
BsuRI	GGCC	3 cut(s)	42, 453, 1067
BtgI	CCRYGG	4 cut(s)	84, 136, 389, 706
BtrI	CACGTC	1 cut(s)	309
BtsCI	GGATG	4 cut(s)	28, 259, 320, 601
BtsI	GCAGTG	2 cut(s)	252, 627
BtsIMutI	CAGTG	5 cut(s)	252, 394, 587, 627, 759
Cac8I	GCNNGC	1 cut(s)	1012
CciI	TCATGA	1 cut(s)	774
CfoI	GCGC	5 cut(s)	425, 434, 448, 620, 697
CseI	GACGC	2 cut(s)	400, 802
Csp6I	GTAC	2 cut(s)	61, 703
CspCI	CAANNNNNGTGG	2 cut(s)	573, 608
CviQI	GTAC	2 cut(s)	61, 703
DdeI	CTNAG	4 cut(s)	35, 528, 958, 978
DinI	GGCGCC	1 cut(s)	424
DpnI	GATC	1 cut(s)	672
DpnII	GATC	1 cut(s)	670
DraI	TTTAAA	1 cut(s)	93
DrdI	GACNNNNNNGTC	1 cut(s)	307
DseDI	GACNNNNNNGTC	1 cut(s)	307
EaeI	YGGCCR	1 cut(s)	451
EciI	GGCGGA	1 cut(s)	641
Ecl136II	GAGCTC	1 cut(s)	109
Eco130I	CCWWGG	3 cut(s)	84, 389, 706
Eco147I	AGGCCT	1 cut(s)	1067
Eco24I	GRGCYC	1 cut(s)	111
Eco32I	GATATC	1 cut(s)	124
Eco53kI	GAGCTC	1 cut(s)	109
Eco81I	CCTNAGG	1 cut(s)	958
Eco88I	CYCGRG	1 cut(s)	485
EcoICRI	GAGCTC	1 cut(s)	109
EcoRV	GATATC	1 cut(s)	124
EcoT14I	CCWWGG	3 cut(s)	84, 389, 706
EcoT22I	ATGCAT	1 cut(s)	148
EcoT38I	GRGCYC	1 cut(s)	111
EgeI	GGCGCC	1 cut(s)	424
EheI	GGCGCC	1 cut(s)	424
ErhI	CCWWGG	3 cut(s)	84, 389, 706
FaqI	GGGAC	1 cut(s)	622
FokI	GGATG	4 cut(s)	35, 246, 327, 608
FriOI	GRGCYC	1 cut(s)	111
FspBI	CTAG	2 cut(s)	344, 887
GlaI	GCGC	5 cut(s)	424, 433, 447, 619, 696
GsaI	CCCAGC	1 cut(s)	651
GsuI	CTGGAG	2 cut(s)	180, 817
HaeII	RGCGCY	2 cut(s)	426, 698
HaeIII	GGCC	3 cut(s)	42, 453, 1067
HapII	CCGG	4 cut(s)	112, 279, 698, 848
HgaI	GACGC	2 cut(s)	400, 802
HhaI	GCGC	5 cut(s)	425, 434, 448, 620, 697
Hin1I	GRCGYC	1 cut(s)	423
Hin6I	GCGC	5 cut(s)	423, 432, 446, 618, 695
HinP1I	GCGC	5 cut(s)	423, 432, 446, 618, 695
HincII	GTYRAC	1 cut(s)	300
HindII	GTYRAC	1 cut(s)	300
HinfI	GANTC	5 cut(s)	80, 179, 275, 301, 329
HpaII	CCGG	4 cut(s)	112, 279, 698, 848
HphI	GGTGA	5 cut(s)	180, 740, 752, 877, 911
Hpy166II	GTNNAC	4 cut(s)	300, 339, 522, 877
Hpy188I	TCNGA	4 cut(s)	160, 334, 351, 756
Hpy188III	TCNNGA	8 cut(s)	112, 197, 263, 279, 312, 775, 817, 887
Hpy8I	GTNNAC	4 cut(s)	300, 339, 522, 877
Hpy99I	CGWCG	1 cut(s)	917
HpyAV	CCTTC	2 cut(s)	184, 988
HpyCH4III	ACNGT	2 cut(s)	398, 833
HpyCH4IV	ACGT	3 cut(s)	308, 579, 879
HpyCH4V	TGCA	8 cut(s)	77, 146, 257, 522, 689, 767, 790, 950
HpyF10VI	GCNNNNNNNGC	5 cut(s)	216, 429, 431, 519, 657
HpyF3I	CTNAG	4 cut(s)	35, 528, 958, 978
HpySE526I	ACGT	3 cut(s)	308, 579, 879
Hsp92I	GRCGYC	1 cut(s)	423
HspAI	GCGC	5 cut(s)	423, 432, 446, 618, 695
KasI	GGCGCC	1 cut(s)	422
Kpn2I	TCCGGA	2 cut(s)	111, 278
Kzo9I	GATC	1 cut(s)	670
LmnI	GCTCC	4 cut(s)	106, 114, 352, 385
LweI	GCATC	3 cut(s)	38, 228, 754
MaeI	CTAG	2 cut(s)	344, 887
MaeII	ACGT	3 cut(s)	308, 579, 879
MaeIII	GTNAC	6 cut(s)	10, 455, 714, 728, 800, 1022
MalI	GATC	1 cut(s)	672
MboI	GATC	1 cut(s)	670
MboII	GAAGA	3 cut(s)	241, 463, 1003
MhlI	GDGCHC	2 cut(s)	111, 524
MluCI	AATT	4 cut(s)	17, 162, 768, 1038
Mly113I	GGCGCC	1 cut(s)	423
MlyI	GAGTC	3 cut(s)	173, 295, 323
MmeI	TCCRAC	2 cut(s)	703, 981
Mph1103I	ATGCAT	1 cut(s)	148
MroI	TCCGGA	2 cut(s)	111, 278
MroXI	GAANNNNTTC	1 cut(s)	248
MseI	TTAA	3 cut(s)	92, 654, 663
MslI	CAYNNNNRTG	2 cut(s)	135, 264
MspI	CCGG	4 cut(s)	112, 279, 698, 848
MwoI	GCNNNNNNNGC	5 cut(s)	216, 429, 431, 519, 657
NarI	GGCGCC	1 cut(s)	423
NcoI	CCATGG	3 cut(s)	84, 389, 706
NdeII	GATC	1 cut(s)	670
NlaIV	GGNNCC	2 cut(s)	387, 424
NmeAIII	GCCGAG	1 cut(s)	48
NmuCI	GTSAC	3 cut(s)	714, 728, 800
NsiI	ATGCAT	1 cut(s)	148
NspI	RCATGY	7 cut(s)	67, 210, 517, 683, 722, 736, 910
OliI	CACNNNNGTG	1 cut(s)	135
PagI	TCATGA	1 cut(s)	774
PceI	AGGCCT	1 cut(s)	1067
PciI	ACATGT	3 cut(s)	679, 718, 732
PdmI	GAANNNNTTC	1 cut(s)	248
PfeI	GAWTC	2 cut(s)	80, 275
PflFI	GACNNNGTC	1 cut(s)	154
PleI	GAGTC	3 cut(s)	173, 295, 323
PluTI	GGCGCC	1 cut(s)	426
PpsI	GAGTC	3 cut(s)	173, 295, 323
PscI	ACATGT	3 cut(s)	679, 718, 732
Psp124BI	GAGCTC	1 cut(s)	111
PspFI	CCCAGC	1 cut(s)	647
PspN4I	GGNNCC	2 cut(s)	387, 424
PsyI	GACNNNGTC	1 cut(s)	154
RsaI	GTAC	2 cut(s)	62, 704
RsaNI	GTAC	2 cut(s)	61, 703
RseI	CAYNNNNRTG	2 cut(s)	135, 264
SacI	GAGCTC	1 cut(s)	111
SaqAI	TTAA	3 cut(s)	92, 654, 663
Sau3AI	GATC	1 cut(s)	670
SchI	GAGTC	3 cut(s)	173, 295, 323
SduI	GDGCHC	2 cut(s)	111, 524
SfaNI	GCATC	3 cut(s)	38, 228, 754
SfoI	GGCGCC	1 cut(s)	424
SmiMI	CAYNNNNRTG	2 cut(s)	135, 264
Sse9I	AATT	4 cut(s)	17, 162, 768, 1038
SseBI	AGGCCT	1 cut(s)	1067
SsiI	CCGC	3 cut(s)	226, 525, 626
SspDI	GGCGCC	1 cut(s)	422
SspI	AATATT	1 cut(s)	751
SspMI	CTAG	2 cut(s)	344, 887
SstI	GAGCTC	1 cut(s)	111
StuI	AGGCCT	1 cut(s)	1067
StyI	CCWWGG	3 cut(s)	84, 389, 706
TaaI	ACNGT	2 cut(s)	398, 833
TaiI	ACGT	3 cut(s)	311, 582, 882
TaqI	TCGA	3 cut(s)	177, 835, 912
TasI	AATT	4 cut(s)	17, 162, 768, 1038
TatI	WGTACW	1 cut(s)	60
TfiI	GAWTC	2 cut(s)	80, 275
Tru1I	TTAA	3 cut(s)	92, 654, 663
Tru9I	TTAA	3 cut(s)	92, 654, 663
TscAI	CASTG	5 cut(s)	259, 401, 594, 627, 766
TseFI	GTSAC	3 cut(s)	714, 728, 800
Tsp45I	GTSAC	3 cut(s)	714, 728, 800
TspDTI	ATGAA	4 cut(s)	39, 554, 763, 791
TspRI	CASTG	5 cut(s)	259, 401, 594, 627, 766
Tth111I	GACNNNGTC	1 cut(s)	154
VneI	GTGCAC	1 cut(s)	520
XapI	RAATTY	1 cut(s)	1038
XbaI	TCTAGA	1 cut(s)	886
XceI	RCATGY	7 cut(s)	67, 210, 517, 683, 722, 736, 910
XmnI	GAANNNNTTC	1 cut(s)	248
XspI	CTAG	2 cut(s)	344, 887
Zsp2I	ATGCAT	1 cut(s)	148

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.