Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr17

Orthogroup ID

OG0001688

Physical Location & Seq

Genomic Coordinates Forward (+)

5790961 .. 5791683

Gene Structure 723 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom17g07830.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 549 bp

ATGGAAATGCAGGAAGCAACAGAAGTTGAGGCAAGCCTAAGAGGCCAAGCAGATAAATGGAAGTACATGTTTGGTATTGCTGATTCCATGGCCTTAAAAATTGCTGGTGCCTCAAACTCAAAGCCTATGATCACTTTGTCCCAATTAGCCTCATGCATAGCACCCTCCCCAGCAATCACATACCTCACACGCATCATGAGACTTCTTGTCCGCCGAAATATATTCACTGTTCATCACCCATCCGATGGCGGGGAACCTATCTATGGGTTGACACACTTATCAAGATGGTTGCTATATGATGATGAGCTGAGCCTAGCTCCAATGCTTGTGATGGAGAATCACCCTTGCCTAATGGCTCCTTGGCACTATTTCGGCCGATGCATCAAAGGAGGAGGTCCATGTGCCTTTAAGATGGCCCATGGGCTTGAGATTTGGGACTACGCGTCTCAAAATCCAGAGTTCAACAAATTATTCAATGGTGGCATGGCCTGTACGGCTAGGGGTTTCAATTTTGATCTGCCGCATGTCGTAGCCATGGCGCCGATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dimerisation Methyltransf_2

Protein Analysis

183

Amino Acids

20.27

Weight (kDa)

6.64

Isoelectric Point (pI)

53.09

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001688)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g17220 FvH4_6g45070
malus_domestica	MD09G1089200.v1.1 MD09G1089800.v1.1 MD09G1090100.v1.1 MD09G1090200.v1.1 MD17G1079200.v1.1
prunus_persica	Prupe.3G235300_v2.0.a1 Prupe.3G235500_v2.0.a1
pyrus_communis	pycom09g01490 pycom17g07830
rosa_chinensis	RchiOBHm_Chr1g0324661 RchiOBHm_Chr2g0139131 RchiOBHm_Chr4g0427641 RchiOBHm_Chr4g0427651
rosa_laevigata	RLG00000007219 RLG00000007220 RLG00000019790 RLG00000021346 RLG00000021347
rosa_multiflora	Rmu_co8132516.1_g000001 Rmu_sc0001803.1_g000030 Rmu_sc0003399.1_g000006 Rmu_sc0009627.1_g000012 Rmu_sc0009627.1_g000013
rosa_roxburghii	Rroxscaffold_2G00105640 Rroxscaffold_5G00369270 Rroxscaffold_5G00369300
rosa_rugosa	Rorug02G0354700 Rorug02G0498000 Rorug04G0219000
rosa_samantha	Rh1CG065100 Rh1DG069400 Rh1DG070200 Rh2AG405100 Rh2BG415000 Rh2CG391300 Rh2DG424900 Rh4AG275500 Rh4BG281400 Rh4BG281500 Rh4CG296800 Rh4CG296900 Rh4DG278800 Rh4DG278900
rosa_wichuraiana	Rw1G005480 Rw2G033080 Rw4G023890 Rw4G023900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	107, 538
AccB7I	CCANNNNNTGG	1 cut(s)	245
AccII	CGCG	1 cut(s)	443
AciI	CCGC	3 cut(s)	211, 249, 521
AcoI	YGGCCR	1 cut(s)	373
AcyI	GRCGYC	1 cut(s)	539
AfaI	GTAC	2 cut(s)	65, 493
AfiI	CCNNNNNNNGG	3 cut(s)	245, 249, 263
AflIII	ACRYGT	2 cut(s)	66, 441
AgsI	TTSAA	3 cut(s)	463, 475, 508
AhdI	GACNNNNNGTC	2 cut(s)	206, 442
AluBI	AGCT	2 cut(s)	307, 317
AluI	AGCT	2 cut(s)	307, 317
Alw26I	GTCTC	2 cut(s)	193, 450
AoxI	GGCC	5 cut(s)	43, 90, 373, 414, 486
AspLEI	GCGC	1 cut(s)	541
AspS9I	GGNCC	2 cut(s)	395, 415
AsuHPI	GGTGA	2 cut(s)	227, 332
AvaII	GGWCC	1 cut(s)	395
BanI	GGYRCC	2 cut(s)	107, 538
BccI	CCATC	5 cut(s)	239, 247, 279, 325, 406
BceAI	ACGGC	1 cut(s)	510
BclI	TGATCA	1 cut(s)	129
BcoDI	GTCTC	2 cut(s)	193, 450
BfaI	CTAG	2 cut(s)	314, 498
BfoI	RGCGCY	1 cut(s)	542
BglI	GCCNNNNNGGC	2 cut(s)	42, 494
BisI	GCNGC	1 cut(s)	521
BlpI	GCTNAGC	1 cut(s)	308
BlsI	GCNGC	1 cut(s)	522
Bme18I	GGWCC	1 cut(s)	395
BmeRI	GACNNNNNGTC	2 cut(s)	206, 442
BmgT120I	GGNCC	2 cut(s)	395, 415
BmiI	GGNNCC	4 cut(s)	109, 255, 357, 540
BmsI	GCATC	3 cut(s)	201, 368, 390
BplI	GAGNNNNNCTC	2 cut(s)	301, 333
Bpu1102I	GCTNAGC	1 cut(s)	308
BpuEI	CTTGAG	1 cut(s)	446
BsaHI	GRCGYC	1 cut(s)	539
BsaJI	CCNNGG	4 cut(s)	87, 359, 418, 534
Bsc4I	CCNNNNNNNGG	3 cut(s)	245, 249, 263
BseDI	CCNNGG	4 cut(s)	87, 359, 418, 534
BseGI	GGATG	1 cut(s)	239
BseLI	CCNNNNNNNGG	3 cut(s)	245, 249, 263
BseMII	CTCAG	1 cut(s)	299
BseRI	GAGGAG	1 cut(s)	405
BseX3I	CGGCCG	1 cut(s)	373
BseYI	CCCAGC	1 cut(s)	169
Bsh1236I	CGCG	1 cut(s)	443
Bsh1285I	CGRYCG	1 cut(s)	376
BshFI	GGCC	5 cut(s)	45, 92, 375, 416, 488
BshNI	GGYRCC	2 cut(s)	107, 538
BsiEI	CGRYCG	1 cut(s)	376
BslFI	GGGAC	2 cut(s)	124, 449
BslI	CCNNNNNNNGG	3 cut(s)	245, 249, 263
BsmAI	GTCTC	2 cut(s)	193, 450
BsmBI	CGTCTC	1 cut(s)	450
BsmFI	GGGAC	2 cut(s)	124, 449
BsnI	GGCC	5 cut(s)	45, 92, 375, 416, 488
Bsp143I	GATC	2 cut(s)	129, 514
Bsp1720I	GCTNAGC	1 cut(s)	308
Bsp19I	CCATGG	3 cut(s)	87, 418, 534
BspACI	CCGC	3 cut(s)	211, 249, 521
BspANI	GGCC	5 cut(s)	45, 92, 375, 416, 488
BspCNI	CTCAG	1 cut(s)	300
BspFNI	CGCG	1 cut(s)	443
BspHI	TCATGA	1 cut(s)	195
BspLI	GGNNCC	4 cut(s)	109, 255, 357, 540
BspT107I	GGYRCC	2 cut(s)	107, 538
BssECI	CCNNGG	4 cut(s)	87, 359, 418, 534
BssMI	GATC	2 cut(s)	129, 514
BssNI	GRCGYC	1 cut(s)	539
BssT1I	CCWWGG	4 cut(s)	87, 359, 418, 534
Bst4CI	ACNGT	1 cut(s)	229
BstACI	GRCGYC	1 cut(s)	539
BstC8I	GCNNGC	1 cut(s)	34
BstDEI	CTNAG	2 cut(s)	38, 308
BstDSI	CCRYGG	3 cut(s)	87, 418, 534
BstF5I	GGATG	1 cut(s)	239
BstFNI	CGCG	1 cut(s)	443
BstH2I	RGCGCY	1 cut(s)	542
BstHHI	GCGC	1 cut(s)	541
BstKTI	GATC	2 cut(s)	132, 517
BstMAI	GTCTC	2 cut(s)	193, 450
BstMBI	GATC	2 cut(s)	129, 514
BstMCI	CGRYCG	1 cut(s)	376
BstMWI	GCNNNNNNNGC	2 cut(s)	42, 494
BstNSI	RCATGY	2 cut(s)	70, 527
BstUI	CGCG	1 cut(s)	443
BstZI	CGGCCG	1 cut(s)	373
BsuRI	GGCC	5 cut(s)	45, 92, 375, 416, 488
BtgI	CCRYGG	3 cut(s)	87, 418, 534
BtsCI	GGATG	1 cut(s)	239
BtsIMutI	CAGTG	1 cut(s)	225
Cac8I	GCNNGC	1 cut(s)	34
CciI	TCATGA	1 cut(s)	195
CfoI	GCGC	1 cut(s)	541
Cfr13I	GGNCC	2 cut(s)	395, 415
CseI	GACGC	1 cut(s)	432
Csp6I	GTAC	2 cut(s)	64, 492
CviAII	CATG	9 cut(s)	67, 88, 153, 196, 399, 419, 484, 524, 535
CviQI	GTAC	2 cut(s)	64, 492
DdeI	CTNAG	2 cut(s)	38, 308
DinI	GGCGCC	1 cut(s)	540
DpnI	GATC	2 cut(s)	131, 516
DpnII	GATC	2 cut(s)	129, 514
DriI	GACNNNNNGTC	2 cut(s)	206, 442
EaeI	YGGCCR	1 cut(s)	373
EagI	CGGCCG	1 cut(s)	373
Eam1105I	GACNNNNNGTC	2 cut(s)	206, 442
EciI	GGCGGA	1 cut(s)	200
EclXI	CGGCCG	1 cut(s)	373
Eco130I	CCWWGG	4 cut(s)	87, 359, 418, 534
Eco47I	GGWCC	1 cut(s)	395
Eco52I	CGGCCG	1 cut(s)	373
EcoT14I	CCWWGG	4 cut(s)	87, 359, 418, 534
EcoT22I	ATGCAT	2 cut(s)	158, 383
EgeI	GGCGCC	1 cut(s)	540
EheI	GGCGCC	1 cut(s)	540
ErhI	CCWWGG	4 cut(s)	87, 359, 418, 534
Esp3I	CGTCTC	1 cut(s)	450
FaeI	CATG	9 cut(s)	70, 91, 156, 199, 402, 422, 487, 527, 538
FaqI	GGGAC	2 cut(s)	124, 449
FatI	CATG	9 cut(s)	66, 87, 152, 195, 398, 418, 483, 523, 534
FauI	CCCGC	1 cut(s)	242
FbaI	TGATCA	1 cut(s)	129
Fnu4HI	GCNGC	1 cut(s)	521
FokI	GGATG	1 cut(s)	226
Fsp4HI	GCNGC	1 cut(s)	521
FspBI	CTAG	2 cut(s)	314, 498
GlaI	GCGC	1 cut(s)	540
GluI	GCNGC	1 cut(s)	521
GsaI	CCCAGC	1 cut(s)	173
HaeII	RGCGCY	1 cut(s)	542
HaeIII	GGCC	5 cut(s)	45, 92, 375, 416, 488
HgaI	GACGC	1 cut(s)	432
HhaI	GCGC	1 cut(s)	541
Hin1I	GRCGYC	1 cut(s)	539
Hin1II	CATG	9 cut(s)	70, 91, 156, 199, 402, 422, 487, 527, 538
Hin6I	GCGC	1 cut(s)	539
HinP1I	GCGC	1 cut(s)	539
HincII	GTYRAC	1 cut(s)	270
HindII	GTYRAC	1 cut(s)	270
HinfI	GANTC	2 cut(s)	83, 337
HphI	GGTGA	2 cut(s)	227, 332
Hpy166II	GTNNAC	1 cut(s)	270
Hpy188I	TCNGA	1 cut(s)	244
Hpy188III	TCNNGA	3 cut(s)	196, 282, 455
Hpy8I	GTNNAC	1 cut(s)	270
HpyCH4III	ACNGT	1 cut(s)	229
HpyCH4V	TGCA	3 cut(s)	10, 156, 381
HpyF10VI	GCNNNNNNNGC	2 cut(s)	42, 494
HpyF3I	CTNAG	2 cut(s)	38, 308
Hsp92I	GRCGYC	1 cut(s)	539
Hsp92II	CATG	9 cut(s)	70, 91, 156, 199, 402, 422, 487, 527, 538
HspAI	GCGC	1 cut(s)	539
KasI	GGCGCC	1 cut(s)	538
Ksp22I	TGATCA	1 cut(s)	129
Kzo9I	GATC	2 cut(s)	129, 514
LmnI	GCTCC	2 cut(s)	322, 361
LpnPI	CCDG	4 cut(s)	90, 183, 468, 502
LweI	GCATC	3 cut(s)	201, 368, 390
MaeI	CTAG	2 cut(s)	314, 498
MalI	GATC	2 cut(s)	131, 516
MboI	GATC	2 cut(s)	129, 514
MluCI	AATT	4 cut(s)	99, 143, 467, 508
MluI	ACGCGT	1 cut(s)	441
Mly113I	GGCGCC	1 cut(s)	539
MnlI	CCTC	8 cut(s)	22, 35, 121, 160, 175, 194, 383, 386
Mph1103I	ATGCAT	2 cut(s)	158, 383
MseI	TTAA	2 cut(s)	95, 408
MvnI	CGCG	1 cut(s)	443
MwoI	GCNNNNNNNGC	2 cut(s)	42, 494
NarI	GGCGCC	1 cut(s)	539
NcoI	CCATGG	3 cut(s)	87, 418, 534
NdeII	GATC	2 cut(s)	129, 514
NlaIII	CATG	9 cut(s)	70, 91, 156, 199, 402, 422, 487, 527, 538
NlaIV	GGNNCC	4 cut(s)	109, 255, 357, 540
NsiI	ATGCAT	2 cut(s)	158, 383
NspI	RCATGY	2 cut(s)	70, 527
PagI	TCATGA	1 cut(s)	195
PciI	ACATGT	1 cut(s)	66
PfeI	GAWTC	2 cut(s)	83, 337
PflMI	CCANNNNNTGG	1 cut(s)	245
PkrI	GCNGC	1 cut(s)	522
PluTI	GGCGCC	1 cut(s)	542
PscI	ACATGT	1 cut(s)	66
PspFI	CCCAGC	1 cut(s)	169
PspN4I	GGNNCC	4 cut(s)	109, 255, 357, 540
PspPI	GGNCC	2 cut(s)	395, 415
RsaI	GTAC	2 cut(s)	65, 493
RsaNI	GTAC	2 cut(s)	64, 492
SaqAI	TTAA	2 cut(s)	95, 408
SatI	GCNGC	1 cut(s)	521
Sau3AI	GATC	2 cut(s)	129, 514
Sau96I	GGNCC	2 cut(s)	395, 415
SetI	ASST	5 cut(s)	186, 259, 309, 319, 397
SfaNI	GCATC	3 cut(s)	201, 368, 390
SfoI	GGCGCC	1 cut(s)	540
SinI	GGWCC	1 cut(s)	395
SmlI	CTYRAG	1 cut(s)	425
SmoI	CTYRAG	1 cut(s)	425
Sse9I	AATT	4 cut(s)	99, 143, 467, 508
SsiI	CCGC	3 cut(s)	211, 249, 521
SspDI	GGCGCC	1 cut(s)	538
SspMI	CTAG	2 cut(s)	314, 498
StyI	CCWWGG	4 cut(s)	87, 359, 418, 534
TaaI	ACNGT	1 cut(s)	229
TasI	AATT	4 cut(s)	99, 143, 467, 508
TatI	WGTACW	1 cut(s)	63
TauI	GCSGC	1 cut(s)	523
TfiI	GAWTC	2 cut(s)	83, 337
Tru1I	TTAA	2 cut(s)	95, 408
Tru9I	TTAA	2 cut(s)	95, 408
TscAI	CASTG	1 cut(s)	232
TspDTI	ATGAA	1 cut(s)	221
TspRI	CASTG	1 cut(s)	232
Van91I	CCANNNNNTGG	1 cut(s)	245
VpaK11BI	GGWCC	1 cut(s)	395
XceI	RCATGY	2 cut(s)	70, 527
XspI	CTAG	2 cut(s)	314, 498
Zsp2I	ATGCAT	2 cut(s)	158, 383

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.