Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0001688

Physical Location & Seq

Genomic Coordinates Reverse (-)

52848216 .. 52849588

Gene Structure 1373 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ39656

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1080 bp

ATGGAAGCAGTTACAGAATTGGATGAAGCATCTCTAAGAGGCCAAGCAGATGTATGGAAGTACATGCTCCGCTTTGCAGATTCCATGGCTTTAAAATCTGCTGTGGAGCTCCGGATACCAGATATCATACACTCTCATGGTCATGCATTGACTTTGTCTGAAATAACCTGCTCCTTCGACTCTGCATCACCCTCTCCAGACATCACATGCCTCTCTCGCATCATGCGGTTGCTGGTTCGCAGGAACATCTTCACCGCACAGCCTGACGGTGGAGATTCCGGAGAAACCCTCTACGGGTTGACTCACTCGTCTAGATGGCTTTTACATGACTCGGAGTTCACTCTAGCTCCGATGGTTCTCATGGAGACAAACTCTACTCTAATGGAGCCATGGCACTGTTTCAGCCAATGTGTCAAGCAAGGCACCCCATGCGCCTTTGAGAAAGCGCATGGCCGCGACATTTGGCAATTCTTCTCCGAAAAACCCGAGTTCAACCGATTGTTCAATGATGGCATGTCGTGCACTGCTAAGATTACAATGAAAGCGATGCTCACAGGATATAAGGGTGGGTTTGATAACGTGGCAACACTGGTGGATGTTGGTGGTGGGACTGGAAGCGCAGTGGCGGAGATTGTGAAGTTGTATCCCAGCATTAAGGGCATTAACTTTGACCTACCACATGTAGTTGCAATAGCGCCGGAGTACCATGGGGTGTCACATGTTGGAGGTGACATGTTTGATGGAGGCAATATTCCGAACACTGATGCAATTTTCATGAAGTGGATTATGCACGATTGGAGCGACAACGATTGCGTCAAGATATTGAAAAACTGTCGAAAGGCGATACCGGAGAGAAGTGGCAAGGTGATTATTGTGGACGTTGTTCTAGAGCCAAATGGTGATGGCATGTTCGACGACACAGGCTTGGTGTTTGATTTGCTAATGATTGCACACGCCTCAGGTGGAAAGGAGAGGACTGAGAGTGAATGGAAGAAGATGTTGGAACTTGCAGGCTTCCCTCGTTACAAAATCATCAAAATTCCAGCTTTATCGTCCATTATTGAGGCCTACCCTGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dimerisation Methyltransf_2

Protein Analysis

359

Amino Acids

39.71

Weight (kDa)

5.46

Isoelectric Point (pI)

39.66

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dimerisation	PF08100	19 - 109	8.8e-18	O-methyltransferase dimerisation domain
Methyltransf_2	PF00891	131 - 339	7.4e-62	O-methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001688)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g17220 FvH4_6g45070
malus_domestica	MD09G1089200.v1.1 MD09G1089800.v1.1 MD09G1090100.v1.1 MD09G1090200.v1.1 MD17G1079200.v1.1
prunus_persica	Prupe.3G235300_v2.0.a1 Prupe.3G235500_v2.0.a1
pyrus_communis	pycom09g01490 pycom17g07830
rosa_chinensis	RchiOBHm_Chr1g0324661 RchiOBHm_Chr2g0139131 RchiOBHm_Chr4g0427641 RchiOBHm_Chr4g0427651
rosa_laevigata	RLG00000007219 RLG00000007220 RLG00000019790 RLG00000021346 RLG00000021347
rosa_multiflora	Rmu_co8132516.1_g000001 Rmu_sc0001803.1_g000030 Rmu_sc0003399.1_g000006 Rmu_sc0009627.1_g000012 Rmu_sc0009627.1_g000013
rosa_roxburghii	Rroxscaffold_2G00105640 Rroxscaffold_5G00369270 Rroxscaffold_5G00369300
rosa_rugosa	Rorug02G0354700 Rorug02G0498000 Rorug04G0219000
rosa_samantha	Rh1CG065100 Rh1DG069400 Rh1DG070200 Rh2AG405100 Rh2BG415000 Rh2CG391300 Rh2DG424900 Rh4AG275500 Rh4BG281400 Rh4BG281500 Rh4CG296800 Rh4CG296900 Rh4DG278800 Rh4DG278900
rosa_wichuraiana	Rw1G005480 Rw2G033080 Rw4G023890 Rw4G023900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	307
Acc36I	ACCTGC	1 cut(s)	176
AccB1I	GGYRCC	1 cut(s)	422
AccII	CGCG	1 cut(s)	456
AccIII	TCCGGA	2 cut(s)	111, 278
AciI	CCGC	5 cut(s)	70, 226, 255, 454, 626
AcoI	YGGCCR	1 cut(s)	451
AcsI	RAATTY	1 cut(s)	1038
AfaI	GTAC	2 cut(s)	62, 704
AfiI	CCNNNNNNNGG	2 cut(s)	269, 294
AflIII	ACRYGT	3 cut(s)	679, 718, 732
AgsI	TTSAA	3 cut(s)	493, 505, 826
AjuI	GAANNNNNNNTTGG	2 cut(s)	983, 1015
AluBI	AGCT	3 cut(s)	109, 347, 1046
AluI	AGCT	3 cut(s)	109, 347, 1046
Alw21I	GWGCWC	2 cut(s)	111, 524
Alw26I	GTCTC	1 cut(s)	359
Alw44I	GTGCAC	1 cut(s)	520
Ama87I	CYCGRG	1 cut(s)	485
Aor13HI	TCCGGA	2 cut(s)	111, 278
AoxI	GGCC	3 cut(s)	40, 451, 1065
ApaLI	GTGCAC	1 cut(s)	520
ApoI	RAATTY	1 cut(s)	1038
Asp700I	GAANNNNTTC	1 cut(s)	248
AspLEI	GCGC	4 cut(s)	434, 448, 620, 697
AsuHPI	GGTGA	5 cut(s)	180, 244, 740, 877, 911
AvaI	CYCGRG	1 cut(s)	485
AxyI	CCTNAGG	1 cut(s)	958
BaeGI	GKGCMC	1 cut(s)	524
BanI	GGYRCC	1 cut(s)	422
BanII	GRGCYC	1 cut(s)	111
Bbv12I	GWGCWC	2 cut(s)	111, 524
BccI	CCATC	5 cut(s)	309, 346, 503, 734, 896
BciVI	GTATCC	2 cut(s)	108, 654
BcoDI	GTCTC	1 cut(s)	359
BfaI	CTAG	3 cut(s)	312, 344, 887
BfoI	RGCGCY	1 cut(s)	698
BfuAI	ACCTGC	1 cut(s)	176
BfuI	GTATCC	2 cut(s)	108, 654
BisI	GCNGC	1 cut(s)	454
BlsI	GCNGC	1 cut(s)	455
BmeT110I	CYCGRG	1 cut(s)	485
BmiI	GGNNCC	2 cut(s)	387, 424
BmsI	GCATC	5 cut(s)	38, 194, 228, 537, 754
BplI	GAGNNNNNCTC	4 cut(s)	273, 305, 356, 388
BpmI	CTGGAG	1 cut(s)	180
BsaJI	CCNNGG	3 cut(s)	84, 389, 706
BsaWI	WCCGGW	3 cut(s)	111, 278, 847
BsaXI	ACNNNNNCTCC	2 cut(s)	331, 361
Bsc4I	CCNNNNNNNGG	2 cut(s)	269, 294
Bse1I	ACTGG	2 cut(s)	594, 616
Bse21I	CCTNAGG	1 cut(s)	958
BseAI	TCCGGA	2 cut(s)	111, 278
BseDI	CCNNGG	3 cut(s)	84, 389, 706
BseGI	GGATG	2 cut(s)	28, 601
BseLI	CCNNNNNNNGG	2 cut(s)	269, 294
BseMII	CTCAG	2 cut(s)	969, 972
BseNI	ACTGG	2 cut(s)	594, 616
BseSI	GKGCMC	1 cut(s)	524
BseYI	CCCAGC	1 cut(s)	647
Bsh1236I	CGCG	1 cut(s)	456
BshFI	GGCC	3 cut(s)	42, 453, 1067
BshNI	GGYRCC	1 cut(s)	422
BsiHKAI	GWGCWC	2 cut(s)	111, 524
BsiHKCI	CYCGRG	1 cut(s)	485
BsiSI	CCGG	4 cut(s)	112, 279, 698, 848
BslFI	GGGAC	1 cut(s)	622
BslI	CCNNNNNNNGG	2 cut(s)	269, 294
BsmAI	GTCTC	1 cut(s)	359
BsmFI	GGGAC	1 cut(s)	622
BsnI	GGCC	3 cut(s)	42, 453, 1067
BsoBI	CYCGRG	1 cut(s)	485
Bsp1286I	GDGCHC	2 cut(s)	111, 524
Bsp13I	TCCGGA	2 cut(s)	111, 278
Bsp19I	CCATGG	3 cut(s)	84, 389, 706
BspACI	CCGC	5 cut(s)	70, 226, 255, 454, 626
BspANI	GGCC	3 cut(s)	42, 453, 1067
BspCNI	CTCAG	2 cut(s)	970, 971
BspEI	TCCGGA	2 cut(s)	111, 278
BspFNI	CGCG	1 cut(s)	456
BspHI	TCATGA	1 cut(s)	774
BspLI	GGNNCC	2 cut(s)	387, 424
BspMI	ACCTGC	1 cut(s)	176
BspT107I	GGYRCC	1 cut(s)	422
BsrI	ACTGG	2 cut(s)	594, 616
BssECI	CCNNGG	3 cut(s)	84, 389, 706
BssT1I	CCWWGG	3 cut(s)	84, 389, 706
Bst4CI	ACNGT	3 cut(s)	269, 398, 833
BstAPI	GCANNNNNTGC	2 cut(s)	429, 519
BstC8I	GCNNGC	1 cut(s)	1012
BstDEI	CTNAG	4 cut(s)	35, 528, 958, 978
BstDSI	CCRYGG	3 cut(s)	84, 389, 706
BstF5I	GGATG	2 cut(s)	28, 601
BstFNI	CGCG	1 cut(s)	456
BstH2I	RGCGCY	1 cut(s)	698
BstHHI	GCGC	4 cut(s)	434, 448, 620, 697
BstMAI	GTCTC	1 cut(s)	359
BstMWI	GCNNNNNNNGC	4 cut(s)	216, 429, 519, 657
BstNSI	RCATGY	7 cut(s)	67, 210, 517, 683, 722, 736, 910
BstSLI	GKGCMC	1 cut(s)	524
BstUI	CGCG	1 cut(s)	456
Bsu36I	CCTNAGG	1 cut(s)	958
BsuI	GTATCC	2 cut(s)	108, 654
BsuRI	GGCC	3 cut(s)	42, 453, 1067
BtgI	CCRYGG	3 cut(s)	84, 389, 706
BtgZI	GCGATG	1 cut(s)	560
BtsCI	GGATG	2 cut(s)	28, 601
BtsI	GCAGTG	2 cut(s)	522, 627
BtsIMutI	CAGTG	5 cut(s)	394, 522, 587, 627, 759
BveI	ACCTGC	1 cut(s)	176
Cac8I	GCNNGC	1 cut(s)	1012
CciI	TCATGA	1 cut(s)	774
CfoI	GCGC	4 cut(s)	434, 448, 620, 697
CseI	GACGC	1 cut(s)	802
Csp6I	GTAC	2 cut(s)	61, 703
CspCI	CAANNNNNGTGG	2 cut(s)	573, 608
CviQI	GTAC	2 cut(s)	61, 703
DdeI	CTNAG	4 cut(s)	35, 528, 958, 978
DraI	TTTAAA	1 cut(s)	93
DrdI	GACNNNNNNGTC	1 cut(s)	307
DseDI	GACNNNNNNGTC	1 cut(s)	307
EaeI	YGGCCR	1 cut(s)	451
EciI	GGCGGA	1 cut(s)	641
Ecl136II	GAGCTC	1 cut(s)	109
Eco130I	CCWWGG	3 cut(s)	84, 389, 706
Eco147I	AGGCCT	1 cut(s)	1067
Eco24I	GRGCYC	1 cut(s)	111
Eco32I	GATATC	1 cut(s)	124
Eco53kI	GAGCTC	1 cut(s)	109
Eco81I	CCTNAGG	1 cut(s)	958
Eco88I	CYCGRG	1 cut(s)	485
EcoICRI	GAGCTC	1 cut(s)	109
EcoRV	GATATC	1 cut(s)	124
EcoT14I	CCWWGG	3 cut(s)	84, 389, 706
EcoT22I	ATGCAT	1 cut(s)	148
EcoT38I	GRGCYC	1 cut(s)	111
ErhI	CCWWGG	3 cut(s)	84, 389, 706
FaqI	GGGAC	1 cut(s)	622
Fnu4HI	GCNGC	1 cut(s)	454
FokI	GGATG	2 cut(s)	35, 608
FriOI	GRGCYC	1 cut(s)	111
Fsp4HI	GCNGC	1 cut(s)	454
FspBI	CTAG	3 cut(s)	312, 344, 887
GlaI	GCGC	4 cut(s)	433, 447, 619, 696
GluI	GCNGC	1 cut(s)	454
GsaI	CCCAGC	1 cut(s)	651
GsuI	CTGGAG	1 cut(s)	180
HaeII	RGCGCY	1 cut(s)	698
HaeIII	GGCC	3 cut(s)	42, 453, 1067
HapII	CCGG	4 cut(s)	112, 279, 698, 848
HgaI	GACGC	1 cut(s)	802
HhaI	GCGC	4 cut(s)	434, 448, 620, 697
Hin6I	GCGC	4 cut(s)	432, 446, 618, 695
HinP1I	GCGC	4 cut(s)	432, 446, 618, 695
HincII	GTYRAC	1 cut(s)	300
HindII	GTYRAC	1 cut(s)	300
HinfI	GANTC	5 cut(s)	80, 179, 275, 301, 329
HpaII	CCGG	4 cut(s)	112, 279, 698, 848
HphI	GGTGA	5 cut(s)	180, 244, 740, 877, 911
Hpy166II	GTNNAC	4 cut(s)	300, 339, 522, 877
Hpy188I	TCNGA	5 cut(s)	160, 334, 351, 478, 756
Hpy188III	TCNNGA	7 cut(s)	112, 197, 279, 312, 775, 817, 887
Hpy8I	GTNNAC	4 cut(s)	300, 339, 522, 877
Hpy99I	CGWCG	1 cut(s)	917
HpyAV	CCTTC	1 cut(s)	184
HpyCH4III	ACNGT	3 cut(s)	269, 398, 833
HpyCH4IV	ACGT	2 cut(s)	579, 879
HpyCH4V	TGCA	9 cut(s)	77, 146, 185, 522, 689, 767, 790, 950, 1010
HpyF10VI	GCNNNNNNNGC	4 cut(s)	216, 429, 519, 657
HpyF3I	CTNAG	4 cut(s)	35, 528, 958, 978
HpySE526I	ACGT	2 cut(s)	579, 879
HspAI	GCGC	4 cut(s)	432, 446, 618, 695
Kpn2I	TCCGGA	2 cut(s)	111, 278
LmnI	GCTCC	7 cut(s)	72, 106, 114, 176, 352, 385, 798
LweI	GCATC	5 cut(s)	38, 194, 228, 537, 754
MaeI	CTAG	3 cut(s)	312, 344, 887
MaeII	ACGT	2 cut(s)	579, 879
MaeIII	GTNAC	4 cut(s)	10, 714, 728, 1022
MboII	GAAGA	4 cut(s)	241, 463, 1003, 1006
MhlI	GDGCHC	2 cut(s)	111, 524
MluCI	AATT	4 cut(s)	17, 467, 768, 1038
MlyI	GAGTC	3 cut(s)	173, 295, 323
MmeI	TCCRAC	2 cut(s)	703, 981
Mph1103I	ATGCAT	1 cut(s)	148
MroI	TCCGGA	2 cut(s)	111, 278
MroXI	GAANNNNTTC	1 cut(s)	248
MseI	TTAA	3 cut(s)	92, 654, 663
MslI	CAYNNNNRTG	2 cut(s)	135, 141
MspI	CCGG	4 cut(s)	112, 279, 698, 848
MvnI	CGCG	1 cut(s)	456
MwoI	GCNNNNNNNGC	4 cut(s)	216, 429, 519, 657
NcoI	CCATGG	3 cut(s)	84, 389, 706
NlaIV	GGNNCC	2 cut(s)	387, 424
NmuCI	GTSAC	2 cut(s)	714, 728
NsiI	ATGCAT	1 cut(s)	148
NspI	RCATGY	7 cut(s)	67, 210, 517, 683, 722, 736, 910
PagI	TCATGA	1 cut(s)	774
PceI	AGGCCT	1 cut(s)	1067
PciI	ACATGT	3 cut(s)	679, 718, 732
PcsI	WCGNNNNNNNCGW	1 cut(s)	798
PdmI	GAANNNNTTC	1 cut(s)	248
PfeI	GAWTC	2 cut(s)	80, 275
PflFI	GACNNNGTC	1 cut(s)	154
PkrI	GCNGC	1 cut(s)	455
PleI	GAGTC	3 cut(s)	173, 295, 323
PpsI	GAGTC	3 cut(s)	173, 295, 323
PscI	ACATGT	3 cut(s)	679, 718, 732
Psp124BI	GAGCTC	1 cut(s)	111
PspFI	CCCAGC	1 cut(s)	647
PspN4I	GGNNCC	2 cut(s)	387, 424
PsyI	GACNNNGTC	1 cut(s)	154
RsaI	GTAC	2 cut(s)	62, 704
RsaNI	GTAC	2 cut(s)	61, 703
RseI	CAYNNNNRTG	2 cut(s)	135, 141
SacI	GAGCTC	1 cut(s)	111
SaqAI	TTAA	3 cut(s)	92, 654, 663
SatI	GCNGC	1 cut(s)	454
SchI	GAGTC	3 cut(s)	173, 295, 323
SduI	GDGCHC	2 cut(s)	111, 524
SfaNI	GCATC	5 cut(s)	38, 194, 228, 537, 754
SmiMI	CAYNNNNRTG	2 cut(s)	135, 141
Sse9I	AATT	4 cut(s)	17, 467, 768, 1038
SseBI	AGGCCT	1 cut(s)	1067
SsiI	CCGC	5 cut(s)	70, 226, 255, 454, 626
SspI	AATATT	1 cut(s)	751
SspMI	CTAG	3 cut(s)	312, 344, 887
SstI	GAGCTC	1 cut(s)	111
StuI	AGGCCT	1 cut(s)	1067
StyI	CCWWGG	3 cut(s)	84, 389, 706
TaaI	ACNGT	3 cut(s)	269, 398, 833
TaiI	ACGT	2 cut(s)	582, 882
TaqI	TCGA	3 cut(s)	177, 835, 912
TasI	AATT	4 cut(s)	17, 467, 768, 1038
TatI	WGTACW	1 cut(s)	60
TauI	GCSGC	1 cut(s)	456
TfiI	GAWTC	2 cut(s)	80, 275
Tru1I	TTAA	3 cut(s)	92, 654, 663
Tru9I	TTAA	3 cut(s)	92, 654, 663
TscAI	CASTG	5 cut(s)	401, 529, 594, 627, 766
TseFI	GTSAC	2 cut(s)	714, 728
Tsp45I	GTSAC	2 cut(s)	714, 728
TspDTI	ATGAA	4 cut(s)	39, 554, 763, 791
TspRI	CASTG	5 cut(s)	401, 529, 594, 627, 766
Tth111I	GACNNNGTC	1 cut(s)	154
VneI	GTGCAC	1 cut(s)	520
XapI	RAATTY	1 cut(s)	1038
XbaI	TCTAGA	2 cut(s)	311, 886
XceI	RCATGY	7 cut(s)	67, 210, 517, 683, 722, 736, 910
XmnI	GAANNNNTTC	1 cut(s)	248
XspI	CTAG	3 cut(s)	312, 344, 887
Zsp2I	ATGCAT	1 cut(s)	148

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.