Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0001688

Physical Location & Seq

Genomic Coordinates Forward (+)

29068473 .. 29071194

Gene Structure 2722 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00105640.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1227 bp

ATGGAAGCTGTTATAGAATTGGATGAAGCAACTCTAAGAGGCCAAGCAGATGTATGGAAGTACATGCTTGGCTTTGCAGATTCCATGGCTTTGAAATCTATTGTGGAGCTCCGCATACCAGATATCATACACTCGCATGGTCATGCATTGACTTTGTCTGAAATAGCCTCATCCATTGATTTTGCATCACCCTCTCCAGACATCACATGCCTCTCTCGGATCATGCGGTTGCTAGTTCGCAGAAACATCTTCACCGCACATCATGGCGGTGGAGATTCCGAAGAAACCCTTTACGGGTTGACTCCTTCGTCTAGATGGCTCTTGTATGACTCGGAGCTCACTCTCGCTCCGATGGTGCTCTCGGAGACAAATCCTATTCTAATGGCTCCAATGCACTATTTCAGCCAATGTGTCAAGCAAGGTGCCTCATGTGCCTTTGAGAAAGCACATGGGCGCGACATTGTGCAATTCTTCTCCGAAAACCTTGAGATCAACCGATTGTTCAACGATGCCATGGCGTGTACCTCTAAGATTATAATGAAAGTGATACTTGCCAAATATAAGGGTGGGTTTGATGACATGGCAAAACTGGTGGATGTTGGTGGTGGGACAGGAACCGCCGTGGCGGAGATAGTGAAGGCGTATCCTAGCATTAAGGGGATCAACTTTGATCTACCATACGTGGTTGCAACAGCACCGGCATACCATGGGGTGTCACATGTCGGAGGTGACATGTTTGATGAGGGCAATATTCCAAACGCTGATGCAATTTTCATGAAGTGGATTTTGCACGACTGGAGCGACAGCGATTGCATCAAGATATTGAAGAACTGTCGGAAGGCAATACCGGAGAGAAGTGGCAAGGTGATTATAGTGGATGTTGTTCTGGAGCCAAATGGTGATGGCATGTTCGACGACACAGGCGTAGTTTTTGATCTGCTAATGATTGCTCATACCACAGGTGGAAAGGAGAGGAGCGAGAGTGAATGGAAGAAAATGTTGGAACAAGCAGGCTTCCCTCGCTACAAAATCATCAAAATTCCATCTTTACCGTCCATTATCGAGGCCTACCCTATACCAGATAACCCAAAGAGCCATGAAGAAGACACATCTTTGGCTACAATTGAGTATGTCAATCACATTCAGTGCCCAATCAACCACATTAGCACCACTGTGCTACCCACCTTCTTAGCTTTTAATCCCAAAGTAGTGAGGAGCCAAAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dimerisation Methyltransf_2

Protein Analysis

408

Amino Acids

45.1

Weight (kDa)

5.53

Isoelectric Point (pI)

48.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dimerisation	PF08100	19 - 108	2e-20	O-methyltransferase dimerisation domain
Methyltransf_2	PF00891	134 - 339	1.5e-60	O-methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001688)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g17220 FvH4_6g45070
malus_domestica	MD09G1089200.v1.1 MD09G1089800.v1.1 MD09G1090100.v1.1 MD09G1090200.v1.1 MD17G1079200.v1.1
prunus_persica	Prupe.3G235300_v2.0.a1 Prupe.3G235500_v2.0.a1
pyrus_communis	pycom09g01490 pycom17g07830
rosa_chinensis	RchiOBHm_Chr1g0324661 RchiOBHm_Chr2g0139131 RchiOBHm_Chr4g0427641 RchiOBHm_Chr4g0427651
rosa_laevigata	RLG00000007219 RLG00000007220 RLG00000019790 RLG00000021346 RLG00000021347
rosa_multiflora	Rmu_co8132516.1_g000001 Rmu_sc0001803.1_g000030 Rmu_sc0003399.1_g000006 Rmu_sc0009627.1_g000012 Rmu_sc0009627.1_g000013
rosa_roxburghii	Rroxscaffold_2G00105640 Rroxscaffold_5G00369270 Rroxscaffold_5G00369300
rosa_rugosa	Rorug02G0354700 Rorug02G0498000 Rorug04G0219000
rosa_samantha	Rh1CG065100 Rh1DG069400 Rh1DG070200 Rh2AG405100 Rh2BG415000 Rh2CG391300 Rh2DG424900 Rh4AG275500 Rh4BG281400 Rh4BG281500 Rh4CG296800 Rh4CG296900 Rh4DG278800 Rh4DG278900
rosa_wichuraiana	Rw1G005480 Rw2G033080 Rw4G023890 Rw4G023900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	536
AasI	GACNNNNNNGTC	1 cut(s)	307
AccB1I	GGYRCC	1 cut(s)	422
AccII	CGCG	1 cut(s)	456
AciI	CCGC	6 cut(s)	112, 226, 255, 267, 618, 626
AclWI	GGATC	2 cut(s)	227, 668
AcsI	RAATTY	1 cut(s)	1038
AfaI	GTAC	2 cut(s)	62, 523
AfiI	CCNNNNNNNGG	1 cut(s)	294
AflIII	ACRYGT	2 cut(s)	718, 732
AgsI	TTSAA	3 cut(s)	94, 505, 826
AjuI	GAANNNNNNNTTGG	2 cut(s)	983, 1015
AleI	CACNNNNGTG	1 cut(s)	1172
AluBI	AGCT	4 cut(s)	8, 109, 337, 1193
AluI	AGCT	4 cut(s)	8, 109, 337, 1193
Alw21I	GWGCWC	3 cut(s)	111, 339, 360
Alw26I	GTCTC	1 cut(s)	359
AlwI	GGATC	2 cut(s)	227, 668
AoxI	GGCC	2 cut(s)	40, 1065
ApoI	RAATTY	1 cut(s)	1038
AspLEI	GCGC	1 cut(s)	456
AsuHPI	GGTGA	5 cut(s)	180, 244, 740, 877, 911
BaeGI	GKGCMC	1 cut(s)	1151
BanI	GGYRCC	1 cut(s)	422
BanII	GRGCYC	2 cut(s)	111, 339
BbsI	GAAGAC	1 cut(s)	1110
Bbv12I	GWGCWC	3 cut(s)	111, 339, 360
BccI	CCATC	4 cut(s)	309, 346, 896, 1051
BceAI	ACGGC	1 cut(s)	605
BciVI	GTATCC	1 cut(s)	654
BcoDI	GTCTC	1 cut(s)	359
BfaI	CTAG	3 cut(s)	233, 312, 648
BfuI	GTATCC	1 cut(s)	654
BmiI	GGNNCC	5 cut(s)	387, 424, 616, 891, 1217
BmsI	GCATC	4 cut(s)	194, 499, 754, 822
BpiI	GAAGAC	1 cut(s)	1110
BpmI	CTGGAG	3 cut(s)	180, 817, 908
BpuEI	CTTGAG	1 cut(s)	506
BsaAI	YACGTR	1 cut(s)	682
BsaJI	CCNNGG	4 cut(s)	84, 513, 621, 706
BsaWI	WCCGGW	1 cut(s)	847
BsaXI	ACNNNNNCTCC	4 cut(s)	331, 361, 967, 997
Bsc4I	CCNNNNNNNGG	1 cut(s)	294
Bse118I	RCCGGY	1 cut(s)	697
Bse1I	ACTGG	2 cut(s)	594, 800
BseDI	CCNNGG	4 cut(s)	84, 513, 621, 706
BseGI	GGATG	4 cut(s)	28, 170, 601, 883
BseLI	CCNNNNNNNGG	1 cut(s)	294
BseNI	ACTGG	2 cut(s)	594, 800
BseRI	GAGGAG	1 cut(s)	988
BseSI	GKGCMC	1 cut(s)	1151
Bsh1236I	CGCG	1 cut(s)	456
BshFI	GGCC	2 cut(s)	42, 1067
BshNI	GGYRCC	1 cut(s)	422
BsiHKAI	GWGCWC	3 cut(s)	111, 339, 360
BsiSI	CCGG	2 cut(s)	698, 848
BslFI	GGGAC	1 cut(s)	622
BslI	CCNNNNNNNGG	1 cut(s)	294
BsmAI	GTCTC	1 cut(s)	359
BsmFI	GGGAC	1 cut(s)	622
BsnI	GGCC	2 cut(s)	42, 1067
Bsp1286I	GDGCHC	4 cut(s)	111, 339, 360, 1151
Bsp143I	GATC	5 cut(s)	219, 489, 660, 670, 934
Bsp19I	CCATGG	3 cut(s)	84, 513, 706
BspACI	CCGC	6 cut(s)	112, 226, 255, 267, 618, 626
BspANI	GGCC	2 cut(s)	42, 1067
BspFNI	CGCG	1 cut(s)	456
BspHI	TCATGA	1 cut(s)	774
BspLI	GGNNCC	5 cut(s)	387, 424, 616, 891, 1217
BspPI	GGATC	2 cut(s)	227, 668
BspT107I	GGYRCC	1 cut(s)	422
BsrFI	RCCGGY	1 cut(s)	697
BsrI	ACTGG	2 cut(s)	594, 800
BssAI	RCCGGY	1 cut(s)	697
BssECI	CCNNGG	4 cut(s)	84, 513, 621, 706
BssMI	GATC	5 cut(s)	219, 489, 660, 670, 934
BssT1I	CCWWGG	3 cut(s)	84, 513, 706
Bst4CI	ACNGT	3 cut(s)	833, 1053, 1174
BstBAI	YACGTR	1 cut(s)	682
BstC8I	GCNNGC	1 cut(s)	1012
BstDEI	CTNAG	3 cut(s)	35, 528, 1189
BstDSI	CCRYGG	4 cut(s)	84, 513, 621, 706
BstF5I	GGATG	4 cut(s)	28, 170, 601, 883
BstFNI	CGCG	1 cut(s)	456
BstHHI	GCGC	1 cut(s)	456
BstKTI	GATC	5 cut(s)	222, 492, 663, 673, 937
BstMAI	GTCTC	1 cut(s)	359
BstMBI	GATC	5 cut(s)	219, 489, 660, 670, 934
BstMWI	GCNNNNNNNGC	2 cut(s)	431, 1020
BstNSI	RCATGY	5 cut(s)	67, 210, 722, 736, 910
BstSLI	GKGCMC	1 cut(s)	1151
BstUI	CGCG	1 cut(s)	456
BstV2I	GAAGAC	1 cut(s)	1110
BsuI	GTATCC	1 cut(s)	654
BsuRI	GGCC	2 cut(s)	42, 1067
BtgI	CCRYGG	4 cut(s)	84, 513, 621, 706
BtsCI	GGATG	4 cut(s)	28, 170, 601, 883
BtsIMutI	CAGTG	2 cut(s)	1151, 1170
Cac8I	GCNNGC	1 cut(s)	1012
CciI	TCATGA	1 cut(s)	774
CfoI	GCGC	1 cut(s)	456
Cfr10I	RCCGGY	1 cut(s)	697
Csp6I	GTAC	2 cut(s)	61, 522
CspCI	CAANNNNNGTGG	2 cut(s)	573, 608
CviQI	GTAC	2 cut(s)	61, 522
DdeI	CTNAG	3 cut(s)	35, 528, 1189
DpnI	GATC	5 cut(s)	221, 491, 662, 672, 936
DpnII	GATC	5 cut(s)	219, 489, 660, 670, 934
DrdI	GACNNNNNNGTC	1 cut(s)	307
DseDI	GACNNNNNNGTC	1 cut(s)	307
EciI	GGCGGA	1 cut(s)	641
Ecl136II	GAGCTC	2 cut(s)	109, 337
Eco130I	CCWWGG	3 cut(s)	84, 513, 706
Eco147I	AGGCCT	1 cut(s)	1067
Eco24I	GRGCYC	2 cut(s)	111, 339
Eco32I	GATATC	1 cut(s)	124
Eco53kI	GAGCTC	2 cut(s)	109, 337
EcoICRI	GAGCTC	2 cut(s)	109, 337
EcoRV	GATATC	1 cut(s)	124
EcoT14I	CCWWGG	3 cut(s)	84, 513, 706
EcoT22I	ATGCAT	1 cut(s)	148
EcoT38I	GRGCYC	2 cut(s)	111, 339
ErhI	CCWWGG	3 cut(s)	84, 513, 706
FalI	AAGNNNNNCTT	4 cut(s)	273, 305, 534, 566
FaqI	GGGAC	1 cut(s)	622
FokI	GGATG	4 cut(s)	35, 157, 608, 890
FriOI	GRGCYC	2 cut(s)	111, 339
FspBI	CTAG	3 cut(s)	233, 312, 648
GlaI	GCGC	1 cut(s)	455
GsuI	CTGGAG	3 cut(s)	180, 817, 908
HaeIII	GGCC	2 cut(s)	42, 1067
HapII	CCGG	2 cut(s)	698, 848
HhaI	GCGC	1 cut(s)	456
Hin6I	GCGC	1 cut(s)	454
HinP1I	GCGC	1 cut(s)	454
HincII	GTYRAC	1 cut(s)	300
HindII	GTYRAC	1 cut(s)	300
HinfI	GANTC	4 cut(s)	80, 275, 301, 329
HpaII	CCGG	2 cut(s)	698, 848
HphI	GGTGA	5 cut(s)	180, 244, 740, 877, 911
Hpy166II	GTNNAC	2 cut(s)	300, 522
Hpy188I	TCNGA	9 cut(s)	160, 219, 280, 334, 351, 364, 478, 725, 837
Hpy188III	TCNNGA	5 cut(s)	197, 312, 775, 817, 887
Hpy8I	GTNNAC	2 cut(s)	300, 522
Hpy99I	CGWCG	1 cut(s)	917
HpyAV	CCTTC	4 cut(s)	315, 631, 832, 1195
HpyCH4III	ACNGT	3 cut(s)	833, 1053, 1174
HpyCH4IV	ACGT	1 cut(s)	681
HpyCH4V	TGCA	9 cut(s)	77, 146, 185, 394, 466, 689, 767, 790, 813
HpyF10VI	GCNNNNNNNGC	2 cut(s)	431, 1020
HpyF3I	CTNAG	3 cut(s)	35, 528, 1189
HpySE526I	ACGT	1 cut(s)	681
HspAI	GCGC	1 cut(s)	454
Kzo9I	GATC	5 cut(s)	219, 489, 660, 670, 934
LmnI	GCTCC	9 cut(s)	106, 114, 334, 352, 391, 798, 889, 975, 1215
LweI	GCATC	4 cut(s)	194, 499, 754, 822
MaeI	CTAG	3 cut(s)	233, 312, 648
MaeII	ACGT	1 cut(s)	681
MaeIII	GTNAC	2 cut(s)	714, 728
MalI	GATC	5 cut(s)	221, 491, 662, 672, 936
MboI	GATC	5 cut(s)	219, 489, 660, 670, 934
MboII	GAAGA	7 cut(s)	241, 293, 463, 838, 1003, 1112, 1115
MfeI	CAATTG	1 cut(s)	1122
MhlI	GDGCHC	4 cut(s)	111, 339, 360, 1151
MluCI	AATT	5 cut(s)	17, 467, 768, 1038, 1122
MlyI	GAGTC	2 cut(s)	295, 323
MmeI	TCCRAC	3 cut(s)	703, 815, 981
Mph1103I	ATGCAT	1 cut(s)	148
MseI	TTAA	2 cut(s)	654, 1197
MslI	CAYNNNNRTG	4 cut(s)	135, 141, 267, 1172
MspI	CCGG	2 cut(s)	698, 848
MunI	CAATTG	1 cut(s)	1122
MvnI	CGCG	1 cut(s)	456
MwoI	GCNNNNNNNGC	2 cut(s)	431, 1020
NcoI	CCATGG	3 cut(s)	84, 513, 706
NdeII	GATC	5 cut(s)	219, 489, 660, 670, 934
NlaIV	GGNNCC	5 cut(s)	387, 424, 616, 891, 1217
NmuCI	GTSAC	2 cut(s)	714, 728
NsiI	ATGCAT	1 cut(s)	148
NspI	RCATGY	5 cut(s)	67, 210, 722, 736, 910
OliI	CACNNNNGTG	1 cut(s)	1172
PagI	TCATGA	1 cut(s)	774
PceI	AGGCCT	1 cut(s)	1067
PciI	ACATGT	2 cut(s)	718, 732
PcsI	WCGNNNNNNNCGW	2 cut(s)	798, 921
PfeI	GAWTC	2 cut(s)	80, 275
PflFI	GACNNNGTC	1 cut(s)	154
PleI	GAGTC	2 cut(s)	295, 323
PpsI	GAGTC	2 cut(s)	295, 323
Ppu21I	YACGTR	1 cut(s)	682
PscI	ACATGT	2 cut(s)	718, 732
PsiI	TTATAA	1 cut(s)	536
Psp124BI	GAGCTC	2 cut(s)	111, 339
PspN4I	GGNNCC	5 cut(s)	387, 424, 616, 891, 1217
PsyI	GACNNNGTC	1 cut(s)	154
RsaI	GTAC	2 cut(s)	62, 523
RsaNI	GTAC	2 cut(s)	61, 522
RseI	CAYNNNNRTG	4 cut(s)	135, 141, 267, 1172
SacI	GAGCTC	2 cut(s)	111, 339
SaqAI	TTAA	2 cut(s)	654, 1197
Sau3AI	GATC	5 cut(s)	219, 489, 660, 670, 934
SchI	GAGTC	2 cut(s)	295, 323
SduI	GDGCHC	4 cut(s)	111, 339, 360, 1151
SfaNI	GCATC	4 cut(s)	194, 499, 754, 822
SmiMI	CAYNNNNRTG	4 cut(s)	135, 141, 267, 1172
SmlI	CTYRAG	1 cut(s)	485
SmoI	CTYRAG	1 cut(s)	485
Sse9I	AATT	5 cut(s)	17, 467, 768, 1038, 1122
SseBI	AGGCCT	1 cut(s)	1067
SsiI	CCGC	6 cut(s)	112, 226, 255, 267, 618, 626
SspI	AATATT	1 cut(s)	751
SspMI	CTAG	3 cut(s)	233, 312, 648
SstI	GAGCTC	2 cut(s)	111, 339
StuI	AGGCCT	1 cut(s)	1067
StyI	CCWWGG	3 cut(s)	84, 513, 706
TaaI	ACNGT	3 cut(s)	833, 1053, 1174
TaiI	ACGT	1 cut(s)	684
TaqI	TCGA	2 cut(s)	912, 1062
TasI	AATT	5 cut(s)	17, 467, 768, 1038, 1122
TatI	WGTACW	1 cut(s)	60
TfiI	GAWTC	2 cut(s)	80, 275
Tru1I	TTAA	2 cut(s)	654, 1197
Tru9I	TTAA	2 cut(s)	654, 1197
TscAI	CASTG	2 cut(s)	1151, 1177
TseFI	GTSAC	2 cut(s)	714, 728
Tsp45I	GTSAC	2 cut(s)	714, 728
TspDTI	ATGAA	5 cut(s)	39, 554, 763, 791, 1113
TspRI	CASTG	2 cut(s)	1151, 1177
Tth111I	GACNNNGTC	1 cut(s)	154
XapI	RAATTY	1 cut(s)	1038
XbaI	TCTAGA	1 cut(s)	311
XceI	RCATGY	5 cut(s)	67, 210, 722, 736, 910
XspI	CTAG	3 cut(s)	233, 312, 648
Zsp2I	ATGCAT	1 cut(s)	148

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.