Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0001688

Physical Location & Seq

Genomic Coordinates Reverse (-)

74337996 .. 74339601

Gene Structure 1606 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000021346

Sequence Viewer

CDS Protein Promoter (2k)

Length: 807 bp

ATGCCAAAACTGAAAGAAGAAAAAGAGGAAGCCATGCTGCTGCAAGGCCAAGCTAATATTTTGCACTACACGTACAACTTTGTCGAAAGCATGGCCTTGAAATGCGCTGTGGAACTTGGCATTGCAGACATGATAAACTCTCAAGGCCAACCCCTGACCGTGCATCAAATCACAGCACGAATTGCCTCGCCGTCCACAGACATCGATCACCTCTTGCCCCTCATGAGATTTCTCGTCCACAAAAATGTCTTCGAGGCAACCACTGATCCCAAAAGCGGAGATACACTCTACGGCATAACCTATTCATCCAAGCGGCTTCTCCGCAGTGAGGACCAAACCGCAATGGCATGCACATCTAGGATTGTCATGGAAGCAATCTTGTCAAATTATAGAGATGTTTTTAATGGAGTGGGATCGATTGTTGATGTTGGAGGGCGTGTAGGCATGGCTATGGCTGAGATTGTGAAGTCACATCCACATATCAGAGGTATCAACATTGATCTGGTGGATGTGGTAGCTAGTGCACCAACTTACCCTGGGGTGACATGTGGAATTGCCGGAAAGCTAGCTACACCGGAGAGAAGTGGAAAGATCATTGTAGTTGATGGGGTTCTGCAACCAGATGGTGACAGAAAGATGGACAGTTTTGTTGTAAGGTACGATCTAACTATGATGGCACAAACTTCAAGTGGGAAGGAAAGGACTAAAGCTGAATGGAAGAAACTGCTGAGGGAAGGAGGATTTGGTCGGCATAAGATCATCAAAATTCCAAGCTTCCTACCACTCATAGAAGCTTACCAAGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dimerisation Methyltransf_2

Protein Analysis

269

Amino Acids

29.52

Weight (kDa)

7.06

Isoelectric Point (pI)

42.68

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dimerisation	PF08100	22 - 109	2.1e-16	O-methyltransferase dimerisation domain
Methyltransf_2	PF00891	93 - 178	1.2e-12	O-methyltransferase domain
Methyltransf_2	PF00891	194 - 248	6.4e-08	O-methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001688)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g17220 FvH4_6g45070
malus_domestica	MD09G1089200.v1.1 MD09G1089800.v1.1 MD09G1090100.v1.1 MD09G1090200.v1.1 MD17G1079200.v1.1
prunus_persica	Prupe.3G235300_v2.0.a1 Prupe.3G235500_v2.0.a1
pyrus_communis	pycom09g01490 pycom17g07830
rosa_chinensis	RchiOBHm_Chr1g0324661 RchiOBHm_Chr2g0139131 RchiOBHm_Chr4g0427641 RchiOBHm_Chr4g0427651
rosa_laevigata	RLG00000007219 RLG00000007220 RLG00000019790 RLG00000021346 RLG00000021347
rosa_multiflora	Rmu_co8132516.1_g000001 Rmu_sc0001803.1_g000030 Rmu_sc0003399.1_g000006 Rmu_sc0009627.1_g000012 Rmu_sc0009627.1_g000013
rosa_roxburghii	Rroxscaffold_2G00105640 Rroxscaffold_5G00369270 Rroxscaffold_5G00369300
rosa_rugosa	Rorug02G0354700 Rorug02G0498000 Rorug04G0219000
rosa_samantha	Rh1CG065100 Rh1DG069400 Rh1DG070200 Rh2AG405100 Rh2BG415000 Rh2CG391300 Rh2DG424900 Rh4AG275500 Rh4BG281400 Rh4BG281500 Rh4CG296800 Rh4CG296900 Rh4DG278800 Rh4DG278900
rosa_wichuraiana	Rw1G005480 Rw2G033080 Rw4G023890 Rw4G023900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	276, 313, 322, 339
AclWI	GGATC	2 cut(s)	260, 421
AcsI	RAATTY	1 cut(s)	765
AfaI	GTAC	2 cut(s)	74, 659
AfiI	CCNNNNNNNGG	2 cut(s)	275, 328
AflIII	ACRYGT	2 cut(s)	69, 545
AgsI	TTSAA	2 cut(s)	100, 687
AjnI	CCWGG	1 cut(s)	535
AjuI	GAANNNNNNNTTGG	2 cut(s)	726, 758
AluBI	AGCT	7 cut(s)	53, 518, 565, 569, 710, 774, 794
AluI	AGCT	7 cut(s)	53, 518, 565, 569, 710, 774, 794
Alw21I	GWGCWC	1 cut(s)	526
Alw44I	GTGCAC	1 cut(s)	522
AlwI	GGATC	2 cut(s)	260, 421
AoxI	GGCC	3 cut(s)	46, 93, 145
ApaLI	GTGCAC	1 cut(s)	522
ApeKI	GCWGC	2 cut(s)	37, 40
ApoI	RAATTY	1 cut(s)	765
AspLEI	GCGC	1 cut(s)	107
AspS9I	GGNCC	1 cut(s)	331
AsuHPI	GGTGA	3 cut(s)	200, 553, 638
AsuNHI	GCTAGC	1 cut(s)	565
AvaII	GGWCC	1 cut(s)	331
BaeGI	GKGCMC	1 cut(s)	526
BbsI	GAAGAC	1 cut(s)	241
Bbv12I	GWGCWC	1 cut(s)	526
BbvCI	CCTCAGC	1 cut(s)	728
BbvI	GCAGC	2 cut(s)	24, 27
BccI	CCATC	4 cut(s)	599, 617, 631, 667
BceAI	ACGGC	2 cut(s)	175, 307
BciT130I	CCWGG	1 cut(s)	537
BfaI	CTAG	3 cut(s)	357, 519, 566
BisI	GCNGC	3 cut(s)	38, 41, 314
BlsI	GCNGC	3 cut(s)	39, 42, 315
Bme1390I	CCNGG	1 cut(s)	537
Bme18I	GGWCC	1 cut(s)	331
BmgT120I	GGNCC	1 cut(s)	331
BmrFI	CCNGG	1 cut(s)	537
BmsI	GCATC	1 cut(s)	172
BmtI	GCTAGC	1 cut(s)	569
BpiI	GAAGAC	1 cut(s)	241
BplI	GAGNNNNNCTC	2 cut(s)	270, 302
Bpu10I	CCTNAGC	1 cut(s)	728
BpuEI	CTTGAG	1 cut(s)	126
Bsa29I	ATCGAT	2 cut(s)	204, 416
BsaAI	YACGTR	1 cut(s)	72
BsaJI	CCNNGG	2 cut(s)	535, 536
BsaWI	WCCGGW	1 cut(s)	574
BsaXI	ACNNNNNCTCC	2 cut(s)	423, 453
Bsc4I	CCNNNNNNNGG	2 cut(s)	275, 328
Bse3DI	GCAATG	2 cut(s)	120, 348
BseBI	CCWGG	1 cut(s)	537
BseCI	ATCGAT	2 cut(s)	204, 416
BseDI	CCNNGG	2 cut(s)	535, 536
BseGI	GGATG	3 cut(s)	305, 472, 514
BseLI	CCNNNNNNNGG	2 cut(s)	275, 328
BseMI	GCAATG	2 cut(s)	120, 348
BseMII	CTCAG	2 cut(s)	447, 719
BseSI	GKGCMC	1 cut(s)	526
BseXI	GCAGC	2 cut(s)	24, 27
BshFI	GGCC	3 cut(s)	48, 95, 147
BshVI	ATCGAT	2 cut(s)	204, 416
BsiHKAI	GWGCWC	1 cut(s)	526
BsiSI	CCGG	2 cut(s)	558, 575
BslI	CCNNNNNNNGG	2 cut(s)	275, 328
BsnI	GGCC	3 cut(s)	48, 95, 147
Bsp1286I	GDGCHC	1 cut(s)	526
Bsp143I	GATC	7 cut(s)	205, 265, 413, 499, 591, 661, 756
BspACI	CCGC	4 cut(s)	276, 313, 322, 339
BspANI	GGCC	3 cut(s)	48, 95, 147
BspCNI	CTCAG	2 cut(s)	448, 720
BspDI	ATCGAT	2 cut(s)	204, 416
BspHI	TCATGA	1 cut(s)	222
BspOI	GCTAGC	1 cut(s)	569
BspPI	GGATC	2 cut(s)	260, 421
BsrDI	GCAATG	2 cut(s)	120, 348
BssECI	CCNNGG	2 cut(s)	535, 536
BssMI	GATC	7 cut(s)	205, 265, 413, 499, 591, 661, 756
Bst2UI	CCWGG	1 cut(s)	537
Bst4CI	ACNGT	2 cut(s)	160, 644
BstAPI	GCANNNNNTGC	1 cut(s)	182
BstBAI	YACGTR	1 cut(s)	72
BstC8I	GCNNGC	2 cut(s)	349, 567
BstDEI	CTNAG	2 cut(s)	456, 728
BstF5I	GGATG	3 cut(s)	305, 472, 514
BstHHI	GCGC	1 cut(s)	107
BstKTI	GATC	7 cut(s)	208, 268, 416, 502, 594, 664, 759
BstMBI	GATC	7 cut(s)	205, 265, 413, 499, 591, 661, 756
BstMWI	GCNNNNNNNGC	1 cut(s)	182
BstNI	CCWGG	1 cut(s)	537
BstNSI	RCATGY	2 cut(s)	351, 549
BstSCI	CCNGG	1 cut(s)	535
BstSLI	GKGCMC	1 cut(s)	526
BstV1I	GCAGC	2 cut(s)	24, 27
BstV2I	GAAGAC	1 cut(s)	241
Bsu15I	ATCGAT	2 cut(s)	204, 416
BsuRI	GGCC	3 cut(s)	48, 95, 147
BsuTUI	ATCGAT	2 cut(s)	204, 416
BtsCI	GGATG	3 cut(s)	305, 472, 514
BtsI	GCAGTG	1 cut(s)	331
BtsIMutI	CAGTG	2 cut(s)	261, 331
Cac8I	GCNNGC	2 cut(s)	349, 567
CciI	TCATGA	1 cut(s)	222
CfoI	GCGC	1 cut(s)	107
Cfr13I	GGNCC	1 cut(s)	331
ClaI	ATCGAT	2 cut(s)	204, 416
Csp6I	GTAC	2 cut(s)	73, 658
CviAII	CATG	8 cut(s)	34, 91, 130, 223, 348, 367, 445, 546
CviQI	GTAC	2 cut(s)	73, 658
DdeI	CTNAG	2 cut(s)	456, 728
DpnI	GATC	7 cut(s)	207, 267, 415, 501, 593, 663, 758
DpnII	GATC	7 cut(s)	205, 265, 413, 499, 591, 661, 756
Eco47I	GGWCC	1 cut(s)	331
EcoRII	CCWGG	1 cut(s)	535
FaeI	CATG	8 cut(s)	37, 94, 133, 226, 351, 370, 448, 549
FatI	CATG	8 cut(s)	33, 90, 129, 222, 347, 366, 444, 545
Fnu4HI	GCNGC	3 cut(s)	38, 41, 314
FokI	GGATG	3 cut(s)	292, 459, 521
Fsp4HI	GCNGC	3 cut(s)	38, 41, 314
FspBI	CTAG	3 cut(s)	357, 519, 566
GlaI	GCGC	1 cut(s)	106
GluI	GCNGC	3 cut(s)	38, 41, 314
HaeIII	GGCC	3 cut(s)	48, 95, 147
HapII	CCGG	2 cut(s)	558, 575
HhaI	GCGC	1 cut(s)	107
Hin1II	CATG	8 cut(s)	37, 94, 133, 226, 351, 370, 448, 549
Hin6I	GCGC	1 cut(s)	105
HinP1I	GCGC	1 cut(s)	105
HindIII	AAGCTT	2 cut(s)	772, 792
HpaII	CCGG	2 cut(s)	558, 575
HphI	GGTGA	3 cut(s)	200, 553, 638
Hpy166II	GTNNAC	3 cut(s)	195, 238, 524
Hpy188I	TCNGA	1 cut(s)	485
Hpy188III	TCNNGA	1 cut(s)	223
Hpy8I	GTNNAC	3 cut(s)	195, 238, 524
HpyAV	CCTTC	2 cut(s)	688, 728
HpyCH4III	ACNGT	2 cut(s)	160, 644
HpyCH4IV	ACGT	1 cut(s)	71
HpyCH4V	TGCA	7 cut(s)	43, 64, 125, 163, 351, 524, 616
HpyF10VI	GCNNNNNNNGC	1 cut(s)	182
HpyF3I	CTNAG	2 cut(s)	456, 728
HpySE526I	ACGT	1 cut(s)	71
Hsp92II	CATG	8 cut(s)	37, 94, 133, 226, 351, 370, 448, 549
HspAI	GCGC	1 cut(s)	105
Kzo9I	GATC	7 cut(s)	205, 265, 413, 499, 591, 661, 756
LpnPI	CCDG	7 cut(s)	167, 488, 522, 549, 571, 588, 633
Lsp1109I	GCAGC	2 cut(s)	24, 27
LweI	GCATC	1 cut(s)	172
MaeI	CTAG	3 cut(s)	357, 519, 566
MaeII	ACGT	1 cut(s)	71
MaeIII	GTNAC	3 cut(s)	468, 541, 626
MalI	GATC	7 cut(s)	207, 267, 415, 501, 593, 663, 758
MboI	GATC	7 cut(s)	205, 265, 413, 499, 591, 661, 756
MboII	GAAGA	3 cut(s)	29, 241, 730
MhlI	GDGCHC	1 cut(s)	526
MluCI	AATT	4 cut(s)	180, 385, 552, 765
MmeI	TCCRAC	1 cut(s)	409
MseI	TTAA	1 cut(s)	402
MslI	CAYNNNNRTG	2 cut(s)	243, 449
MspI	CCGG	2 cut(s)	558, 575
MspR9I	CCNGG	1 cut(s)	537
MvaI	CCWGG	1 cut(s)	537
MwoI	GCNNNNNNNGC	1 cut(s)	182
NdeII	GATC	7 cut(s)	205, 265, 413, 499, 591, 661, 756
NheI	GCTAGC	1 cut(s)	565
NlaIII	CATG	8 cut(s)	37, 94, 133, 226, 351, 370, 448, 549
NmuCI	GTSAC	3 cut(s)	468, 541, 626
NspI	RCATGY	2 cut(s)	351, 549
PaeI	GCATGC	1 cut(s)	351
PagI	TCATGA	1 cut(s)	222
PasI	CCCWGGG	1 cut(s)	536
PciI	ACATGT	1 cut(s)	545
PkrI	GCNGC	3 cut(s)	39, 42, 315
Ppu21I	YACGTR	1 cut(s)	72
PscI	ACATGT	1 cut(s)	545
Psp6I	CCWGG	1 cut(s)	535
PspGI	CCWGG	1 cut(s)	535
PspPI	GGNCC	1 cut(s)	331
RsaI	GTAC	2 cut(s)	74, 659
RsaNI	GTAC	2 cut(s)	73, 658
RseI	CAYNNNNRTG	2 cut(s)	243, 449
SaqAI	TTAA	1 cut(s)	402
SatI	GCNGC	3 cut(s)	38, 41, 314
Sau3AI	GATC	7 cut(s)	205, 265, 413, 499, 591, 661, 756
Sau96I	GGNCC	1 cut(s)	331
ScrFI	CCNGG	1 cut(s)	537
SduI	GDGCHC	1 cut(s)	526
SfaNI	GCATC	1 cut(s)	172
SinI	GGWCC	1 cut(s)	331
SmiMI	CAYNNNNRTG	2 cut(s)	243, 449
SmlI	CTYRAG	1 cut(s)	141
SmoI	CTYRAG	1 cut(s)	141
SphI	GCATGC	1 cut(s)	351
Sse9I	AATT	4 cut(s)	180, 385, 552, 765
SsiI	CCGC	4 cut(s)	276, 313, 322, 339
SspI	AATATT	1 cut(s)	58
SspMI	CTAG	3 cut(s)	357, 519, 566
StyD4I	CCNGG	1 cut(s)	535
TaaI	ACNGT	2 cut(s)	160, 644
TaiI	ACGT	1 cut(s)	74
TaqI	TCGA	4 cut(s)	84, 204, 252, 416
TasI	AATT	4 cut(s)	180, 385, 552, 765
TauI	GCSGC	1 cut(s)	316
Tru1I	TTAA	1 cut(s)	402
Tru9I	TTAA	1 cut(s)	402
TscAI	CASTG	2 cut(s)	268, 331
TseFI	GTSAC	3 cut(s)	468, 541, 626
TseI	GCWGC	2 cut(s)	37, 40
Tsp45I	GTSAC	3 cut(s)	468, 541, 626
TspDTI	ATGAA	1 cut(s)	294
TspRI	CASTG	2 cut(s)	268, 331
VneI	GTGCAC	1 cut(s)	522
VpaK11BI	GGWCC	1 cut(s)	331
XapI	RAATTY	1 cut(s)	765
XceI	RCATGY	2 cut(s)	351, 549
XspI	CTAG	3 cut(s)	357, 519, 566

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.