Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0001688

Physical Location & Seq

Genomic Coordinates Reverse (-)

12523464 .. 12525195

Gene Structure 1732 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG070200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 843 bp

ATGGAAGCAGTTACAGAATTGGATGAAGCATCTCTAAGAGGCCAAGCAAATGTATGGAAGTACATGCTCGGCTTTGCAGATTCCATGGCTTTAAAATCTGCTGTGGAGCTCCGGATACCAGATATCATACACTCTAATGGTCATGCAATGACTTTGTCTGAAATAGCCCGCTCCTTCGACTCTGCATCACCCTGTCCAGACATCACATGCCTCTCTCGCATCATGCGGTTGCTAGTTCGCAGGAACATCTTCACTGCACAACATGACGGTGGAGATTCCGGAGAAACCCTCTACGGGTTAACTCACTCATCTAGATGGCTTTTACATGACTCAGAGTTCACTCTAGCTCTGATGGTTCTCATGGAGACAAATCCTACTCTAATGGAGCCATGGCACTATTTCAACCAATGCGTCAAGCAAGGCGCTCCATGCGCCTTTGAGAAAGCGCATGACAGCGACATTTGGCAATTCTTCACCGAAAAACCCGAGTTCAACCGATTGTTCAACGATAGCATGACATGCACCGCTAAGATTACAATGAAAGCAATACTCACGGGATATAAGGGTGGGTTTGATAACGTGGCAACACTGGTGGATGTTGGTGGTGGGACTGGAAGCGTAGTGGCGGAGATTGTGAAGTTGTATCCCAGCATTAGGGGCATCAACTTTGATCTACCACATGTAGTTGCAACAGCGCCGGTGTACCATGGGGTGTCACATGTTGGAGGTGACATGTTTGATGACGGCAGTATTCCAAACACTGATGCAATTTTCATGATGGTAATTCAAAAGCCAAAAGGATTATGCACGGCTGGAGCGACATTGATTGCGTCAAGATATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dimerisation Methyltransf_2

Protein Analysis

280

Amino Acids

30.76

Weight (kDa)

5.52

Isoelectric Point (pI)

37.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dimerisation	PF08100	19 - 109	1e-20	O-methyltransferase dimerisation domain
Methyltransf_2	PF00891	131 - 262	2.3e-32	O-methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001688)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g17220 FvH4_6g45070
malus_domestica	MD09G1089200.v1.1 MD09G1089800.v1.1 MD09G1090100.v1.1 MD09G1090200.v1.1 MD17G1079200.v1.1
prunus_persica	Prupe.3G235300_v2.0.a1 Prupe.3G235500_v2.0.a1
pyrus_communis	pycom09g01490 pycom17g07830
rosa_chinensis	RchiOBHm_Chr1g0324661 RchiOBHm_Chr2g0139131 RchiOBHm_Chr4g0427641 RchiOBHm_Chr4g0427651
rosa_laevigata	RLG00000007219 RLG00000007220 RLG00000019790 RLG00000021346 RLG00000021347
rosa_multiflora	Rmu_co8132516.1_g000001 Rmu_sc0001803.1_g000030 Rmu_sc0003399.1_g000006 Rmu_sc0009627.1_g000012 Rmu_sc0009627.1_g000013
rosa_roxburghii	Rroxscaffold_2G00105640 Rroxscaffold_5G00369270 Rroxscaffold_5G00369300
rosa_rugosa	Rorug02G0354700 Rorug02G0498000 Rorug04G0219000
rosa_samantha	Rh1CG065100 Rh1DG069400 Rh1DG070200 Rh2AG405100 Rh2BG415000 Rh2CG391300 Rh2DG424900 Rh4AG275500 Rh4BG281400 Rh4BG281500 Rh4CG296800 Rh4CG296900 Rh4DG278800 Rh4DG278900
rosa_wichuraiana	Rw1G005480 Rw2G033080 Rw4G023890 Rw4G023900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	171
AccIII	TCCGGA	2 cut(s)	111, 278
AciI	CCGC	4 cut(s)	169, 226, 525, 626
AfaI	GTAC	2 cut(s)	62, 704
AfiI	CCNNNNNNNGG	2 cut(s)	294, 654
AflIII	ACRYGT	3 cut(s)	679, 718, 732
AgsI	TTSAA	4 cut(s)	403, 493, 505, 788
AluBI	AGCT	2 cut(s)	109, 347
AluI	AGCT	2 cut(s)	109, 347
Alw21I	GWGCWC	1 cut(s)	111
Alw26I	GTCTC	1 cut(s)	359
Ama87I	CYCGRG	1 cut(s)	485
Aor13HI	TCCGGA	2 cut(s)	111, 278
AoxI	GGCC	1 cut(s)	40
Asp700I	GAANNNNTTC	1 cut(s)	248
AspLEI	GCGC	4 cut(s)	425, 434, 448, 697
AsuHPI	GGTGA	3 cut(s)	180, 466, 740
AvaI	CYCGRG	1 cut(s)	485
BanII	GRGCYC	1 cut(s)	111
Bbv12I	GWGCWC	1 cut(s)	111
BccI	CCATC	3 cut(s)	309, 346, 772
BceAI	ACGGC	2 cut(s)	760, 825
BciVI	GTATCC	2 cut(s)	108, 654
BcoDI	GTCTC	1 cut(s)	359
BfaI	CTAG	3 cut(s)	233, 312, 344
BfoI	RGCGCY	2 cut(s)	426, 698
BfuI	GTATCC	2 cut(s)	108, 654
BmeT110I	CYCGRG	1 cut(s)	485
BmiI	GGNNCC	1 cut(s)	387
BmsI	GCATC	5 cut(s)	38, 194, 228, 669, 754
BplI	GAGNNNNNCTC	2 cut(s)	273, 305
BpmI	CTGGAG	1 cut(s)	834
BsaJI	CCNNGG	3 cut(s)	84, 389, 706
BsaWI	WCCGGW	2 cut(s)	111, 278
Bsc4I	CCNNNNNNNGG	2 cut(s)	294, 654
Bse118I	RCCGGY	1 cut(s)	697
Bse1I	ACTGG	2 cut(s)	594, 616
Bse3DI	GCAATG	1 cut(s)	153
BseAI	TCCGGA	2 cut(s)	111, 278
BseDI	CCNNGG	3 cut(s)	84, 389, 706
BseGI	GGATG	2 cut(s)	28, 601
BseLI	CCNNNNNNNGG	2 cut(s)	294, 654
BseMI	GCAATG	1 cut(s)	153
BseMII	CTCAG	1 cut(s)	345
BseNI	ACTGG	2 cut(s)	594, 616
BseYI	CCCAGC	1 cut(s)	647
BsgI	GTGCAG	1 cut(s)	240
BshFI	GGCC	1 cut(s)	42
BsiHKAI	GWGCWC	1 cut(s)	111
BsiHKCI	CYCGRG	1 cut(s)	485
BsiSI	CCGG	3 cut(s)	112, 279, 698
BslFI	GGGAC	1 cut(s)	622
BslI	CCNNNNNNNGG	2 cut(s)	294, 654
BsmAI	GTCTC	1 cut(s)	359
BsmFI	GGGAC	1 cut(s)	622
BsnI	GGCC	1 cut(s)	42
BsoBI	CYCGRG	1 cut(s)	485
Bsp1286I	GDGCHC	1 cut(s)	111
Bsp13I	TCCGGA	2 cut(s)	111, 278
Bsp143I	GATC	1 cut(s)	670
Bsp19I	CCATGG	3 cut(s)	84, 389, 706
BspACI	CCGC	4 cut(s)	169, 226, 525, 626
BspANI	GGCC	1 cut(s)	42
BspCNI	CTCAG	1 cut(s)	344
BspEI	TCCGGA	2 cut(s)	111, 278
BspHI	TCATGA	1 cut(s)	774
BspLI	GGNNCC	1 cut(s)	387
BsrBI	CCGCTC	1 cut(s)	171
BsrDI	GCAATG	1 cut(s)	153
BsrFI	RCCGGY	1 cut(s)	697
BsrI	ACTGG	2 cut(s)	594, 616
BssAI	RCCGGY	1 cut(s)	697
BssECI	CCNNGG	3 cut(s)	84, 389, 706
BssMI	GATC	1 cut(s)	670
BssT1I	CCWWGG	3 cut(s)	84, 389, 706
Bst4CI	ACNGT	1 cut(s)	269
BstAPI	GCANNNNNTGC	1 cut(s)	519
BstC8I	GCNNGC	1 cut(s)	169
BstDEI	CTNAG	3 cut(s)	35, 331, 528
BstDSI	CCRYGG	3 cut(s)	84, 389, 706
BstF5I	GGATG	2 cut(s)	28, 601
BstH2I	RGCGCY	2 cut(s)	426, 698
BstHHI	GCGC	4 cut(s)	425, 434, 448, 697
BstKTI	GATC	1 cut(s)	673
BstMAI	GTCTC	1 cut(s)	359
BstMBI	GATC	1 cut(s)	670
BstMWI	GCNNNNNNNGC	5 cut(s)	216, 429, 431, 519, 657
BstNSI	RCATGY	6 cut(s)	67, 210, 522, 683, 722, 736
BsuI	GTATCC	2 cut(s)	108, 654
BsuRI	GGCC	1 cut(s)	42
BtgI	CCRYGG	3 cut(s)	84, 389, 706
BtsCI	GGATG	2 cut(s)	28, 601
BtsI	GCAGTG	1 cut(s)	252
BtsIMutI	CAGTG	3 cut(s)	252, 587, 759
Cac8I	GCNNGC	1 cut(s)	169
CciI	TCATGA	1 cut(s)	774
CfoI	GCGC	4 cut(s)	425, 434, 448, 697
Cfr10I	RCCGGY	1 cut(s)	697
CseI	GACGC	2 cut(s)	400, 819
Csp6I	GTAC	2 cut(s)	61, 703
CspCI	CAANNNNNGTGG	2 cut(s)	573, 608
CviQI	GTAC	2 cut(s)	61, 703
DdeI	CTNAG	3 cut(s)	35, 331, 528
DpnI	GATC	1 cut(s)	672
DpnII	GATC	1 cut(s)	670
DraI	TTTAAA	1 cut(s)	93
EciI	GGCGGA	1 cut(s)	641
Ecl136II	GAGCTC	1 cut(s)	109
Eco130I	CCWWGG	3 cut(s)	84, 389, 706
Eco24I	GRGCYC	1 cut(s)	111
Eco32I	GATATC	1 cut(s)	124
Eco53kI	GAGCTC	1 cut(s)	109
Eco88I	CYCGRG	1 cut(s)	485
EcoICRI	GAGCTC	1 cut(s)	109
EcoRV	GATATC	1 cut(s)	124
EcoT14I	CCWWGG	3 cut(s)	84, 389, 706
EcoT38I	GRGCYC	1 cut(s)	111
ErhI	CCWWGG	3 cut(s)	84, 389, 706
FaqI	GGGAC	1 cut(s)	622
FauI	CCCGC	1 cut(s)	176
FokI	GGATG	2 cut(s)	35, 608
FriOI	GRGCYC	1 cut(s)	111
FspBI	CTAG	3 cut(s)	233, 312, 344
GlaI	GCGC	4 cut(s)	424, 433, 447, 696
GsaI	CCCAGC	1 cut(s)	651
GsuI	CTGGAG	1 cut(s)	834
HaeII	RGCGCY	2 cut(s)	426, 698
HaeIII	GGCC	1 cut(s)	42
HapII	CCGG	3 cut(s)	112, 279, 698
HgaI	GACGC	2 cut(s)	400, 819
HhaI	GCGC	4 cut(s)	425, 434, 448, 697
Hin6I	GCGC	4 cut(s)	423, 432, 446, 695
HinP1I	GCGC	4 cut(s)	423, 432, 446, 695
HincII	GTYRAC	1 cut(s)	300
HindII	GTYRAC	1 cut(s)	300
HinfI	GANTC	4 cut(s)	80, 179, 275, 329
HpaI	GTTAAC	1 cut(s)	300
HpaII	CCGG	3 cut(s)	112, 279, 698
HphI	GGTGA	3 cut(s)	180, 466, 740
Hpy166II	GTNNAC	3 cut(s)	300, 339, 703
Hpy188I	TCNGA	3 cut(s)	160, 334, 351
Hpy188III	TCNNGA	6 cut(s)	112, 197, 279, 312, 775, 834
Hpy8I	GTNNAC	3 cut(s)	300, 339, 703
HpyAV	CCTTC	1 cut(s)	184
HpyCH4III	ACNGT	1 cut(s)	269
HpyCH4IV	ACGT	1 cut(s)	579
HpyCH4V	TGCA	8 cut(s)	77, 146, 185, 257, 522, 689, 767, 807
HpyF10VI	GCNNNNNNNGC	5 cut(s)	216, 429, 431, 519, 657
HpyF3I	CTNAG	3 cut(s)	35, 331, 528
HpySE526I	ACGT	1 cut(s)	579
HspAI	GCGC	4 cut(s)	423, 432, 446, 695
Kpn2I	TCCGGA	2 cut(s)	111, 278
KspAI	GTTAAC	1 cut(s)	300
Kzo9I	GATC	1 cut(s)	670
LmnI	GCTCC	6 cut(s)	106, 114, 176, 385, 430, 815
LweI	GCATC	5 cut(s)	38, 194, 228, 669, 754
MaeI	CTAG	3 cut(s)	233, 312, 344
MaeII	ACGT	1 cut(s)	579
MaeIII	GTNAC	3 cut(s)	10, 714, 728
MalI	GATC	1 cut(s)	672
MbiI	CCGCTC	1 cut(s)	171
MboI	GATC	1 cut(s)	670
MboII	GAAGA	2 cut(s)	241, 463
MhlI	GDGCHC	1 cut(s)	111
MluCI	AATT	4 cut(s)	17, 467, 768, 783
MlyI	GAGTC	2 cut(s)	173, 323
MmeI	TCCRAC	1 cut(s)	703
MnlI	CCTC	4 cut(s)	32, 221, 299, 719
MroI	TCCGGA	2 cut(s)	111, 278
MroXI	GAANNNNTTC	1 cut(s)	248
MseI	TTAA	2 cut(s)	92, 299
MslI	CAYNNNNRTG	3 cut(s)	135, 267, 313
MspI	CCGG	3 cut(s)	112, 279, 698
MwoI	GCNNNNNNNGC	5 cut(s)	216, 429, 431, 519, 657
NcoI	CCATGG	3 cut(s)	84, 389, 706
NdeII	GATC	1 cut(s)	670
NlaIV	GGNNCC	1 cut(s)	387
NmeAIII	GCCGAG	1 cut(s)	48
NmuCI	GTSAC	2 cut(s)	714, 728
NspI	RCATGY	6 cut(s)	67, 210, 522, 683, 722, 736
PagI	TCATGA	1 cut(s)	774
PciI	ACATGT	3 cut(s)	679, 718, 732
PcsI	WCGNNNNNNNCGW	1 cut(s)	815
PdmI	GAANNNNTTC	1 cut(s)	248
PfeI	GAWTC	2 cut(s)	80, 275
PflFI	GACNNNGTC	1 cut(s)	154
PleI	GAGTC	2 cut(s)	173, 323
PpsI	GAGTC	2 cut(s)	173, 323
PscI	ACATGT	3 cut(s)	679, 718, 732
Psp124BI	GAGCTC	1 cut(s)	111
PspFI	CCCAGC	1 cut(s)	647
PspN4I	GGNNCC	1 cut(s)	387
PsyI	GACNNNGTC	1 cut(s)	154
RsaI	GTAC	2 cut(s)	62, 704
RsaNI	GTAC	2 cut(s)	61, 703
RseI	CAYNNNNRTG	3 cut(s)	135, 267, 313
SacI	GAGCTC	1 cut(s)	111
SaqAI	TTAA	2 cut(s)	92, 299
Sau3AI	GATC	1 cut(s)	670
SchI	GAGTC	2 cut(s)	173, 323
SduI	GDGCHC	1 cut(s)	111
SetI	ASST	4 cut(s)	111, 349, 582, 730
SfaNI	GCATC	5 cut(s)	38, 194, 228, 669, 754
SgrAI	CRCCGGYG	1 cut(s)	697
SmiMI	CAYNNNNRTG	3 cut(s)	135, 267, 313
Sse9I	AATT	4 cut(s)	17, 467, 768, 783
SsiI	CCGC	4 cut(s)	169, 226, 525, 626
SspMI	CTAG	3 cut(s)	233, 312, 344
SstI	GAGCTC	1 cut(s)	111
StyI	CCWWGG	3 cut(s)	84, 389, 706
TaaI	ACNGT	1 cut(s)	269
TaiI	ACGT	1 cut(s)	582
TaqI	TCGA	1 cut(s)	177
TasI	AATT	4 cut(s)	17, 467, 768, 783
TatI	WGTACW	1 cut(s)	60
TfiI	GAWTC	2 cut(s)	80, 275
Tru1I	TTAA	2 cut(s)	92, 299
Tru9I	TTAA	2 cut(s)	92, 299
TscAI	CASTG	3 cut(s)	259, 594, 766
TseFI	GTSAC	2 cut(s)	714, 728
Tsp45I	GTSAC	2 cut(s)	714, 728
TspDTI	ATGAA	3 cut(s)	39, 554, 763
TspRI	CASTG	3 cut(s)	259, 594, 766
Tth111I	GACNNNGTC	1 cut(s)	154
XbaI	TCTAGA	1 cut(s)	311
XceI	RCATGY	6 cut(s)	67, 210, 522, 683, 722, 736
XmnI	GAANNNNTTC	1 cut(s)	248
XspI	CTAG	3 cut(s)	233, 312, 344

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.