Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb6

Orthogroup ID

OG0001688

Physical Location & Seq

Genomic Coordinates Reverse (-)

34615857 .. 34617295

Gene Structure 1439 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_6g45070.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1062 bp

ATGGAAACAGCTGCAGAATTGGATGAAGCAAGTCTGAGAGGCCAAGCAGATGTATGGAAGTACATGCTCGGCTTTGCTGATTCCATGGCTTTGAGATCTGCTGTGGAGCTCCGCATACCAGATATCATACACTCTCATGGTCGTGCATTGACGTTGTCTGAAATAGCCTCGTCCTTCGACTCTGCATCACCCTCTCCCGATATCTCATGCCTCGCTCGCATCATGCGGTTGCTGGTCCGCCGGAACATCTTCACCGCACACCATGACGGTGAAGATTCTGAGAAAACCGGCCTCTACGGGTTGACTCACTCGTCTAGATGGCTCTTGCACGACTCAGAGCTCACTCTAGCTCCGATGGTTCTCATGGAGACCAATCCTACTCTAATGGCTCCATGGCACTGTTTCAGCCAGTGTGTCAAGCAACGCGGCCCATGCGCCTTTAAGAGGGCGCATGGGCGCGACATTTGGCAATTCTTTTCTGAAAATCTCAAGTTCAACCGATTGTTCAACGATGGCATGGCGTGTACAGCTAAGATTACAATGAAAGCGATACTTGCCGGATATAAGGGTGGGTTTGAGGACGTGGCAACACTGGTGGATGTTGGTGGTGGGACTGGAAGCGCAGTGGCGGAGATTGTGAAGGCGTATCCCAGCATTAAGGGCATCAACTTTGATCTACCACATGTAGTTGCAACAGCGCCGGTGTACCATGGGGTGTCACATGTTGGAGGTGACATGTTTGATGAGGGCAGTATTCCAAACGCAGATGCAATTTTCATGAAGCGGGTTATGCACGACTGGAGCGACAGCGATTGCGTCAAGATATTGAAGAACTGCCGGAATGTGATACCGGAGAGAACTGGCAAGGTGATAATTGTGGACGTTATCCTTGAGCCAAATGGTGTTGGCATGTTTGATCTGCTAATGATTGCACACACCTCAGGTGGAAAGGAGAGGACTGAGAGTGAATGGACGAAGATGTTGGAACAAGCAGGCTTCCCTCGCCTCAAAATCATAAAAATTCCAGCTTTGATGCTCATTATTGAGGCATACCCTGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dimerisation Methyltransf_2

Protein Analysis

354

Amino Acids

38.93

Weight (kDa)

6.11

Isoelectric Point (pI)

41.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dimerisation	PF08100	19 - 110	8.8e-20	O-methyltransferase dimerisation domain
Methyltransf_2	PF00891	136 - 333	1.6e-58	O-methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001688)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g17220 FvH4_6g45070
malus_domestica	MD09G1089200.v1.1 MD09G1089800.v1.1 MD09G1090100.v1.1 MD09G1090200.v1.1 MD17G1079200.v1.1
prunus_persica	Prupe.3G235300_v2.0.a1 Prupe.3G235500_v2.0.a1
pyrus_communis	pycom09g01490 pycom17g07830
rosa_chinensis	RchiOBHm_Chr1g0324661 RchiOBHm_Chr2g0139131 RchiOBHm_Chr4g0427641 RchiOBHm_Chr4g0427651
rosa_laevigata	RLG00000007219 RLG00000007220 RLG00000019790 RLG00000021346 RLG00000021347
rosa_multiflora	Rmu_co8132516.1_g000001 Rmu_sc0001803.1_g000030 Rmu_sc0003399.1_g000006 Rmu_sc0009627.1_g000012 Rmu_sc0009627.1_g000013
rosa_roxburghii	Rroxscaffold_2G00105640 Rroxscaffold_5G00369270 Rroxscaffold_5G00369300
rosa_rugosa	Rorug02G0354700 Rorug02G0498000 Rorug04G0219000
rosa_samantha	Rh1CG065100 Rh1DG069400 Rh1DG070200 Rh2AG405100 Rh2BG415000 Rh2CG391300 Rh2DG424900 Rh4AG275500 Rh4BG281400 Rh4BG281500 Rh4CG296800 Rh4CG296900 Rh4DG278800 Rh4DG278900
rosa_wichuraiana	Rw1G005480 Rw2G033080 Rw4G023890 Rw4G023900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	310
AccII	CGCG	2 cut(s)	426, 459
AciI	CCGC	7 cut(s)	112, 226, 238, 255, 426, 629, 784
AcsI	RAATTY	1 cut(s)	1020
AfaI	GTAC	3 cut(s)	62, 526, 707
AfiI	CCNNNNNNNGG	1 cut(s)	444
AflIII	ACRYGT	3 cut(s)	682, 721, 735
AgsI	TTSAA	3 cut(s)	496, 508, 829
AjiI	CACGTC	1 cut(s)	583
AluBI	AGCT	6 cut(s)	11, 109, 340, 350, 530, 1028
AluI	AGCT	6 cut(s)	11, 109, 340, 350, 530, 1028
Alw21I	GWGCWC	2 cut(s)	111, 342
Alw26I	GTCTC	1 cut(s)	362
AoxI	GGCC	3 cut(s)	40, 289, 427
ApeKI	GCWGC	1 cut(s)	11
ApoI	RAATTY	1 cut(s)	1020
Asp700I	GAANNNNTTC	1 cut(s)	248
AspLEI	GCGC	5 cut(s)	437, 451, 459, 623, 700
AspS9I	GGNCC	2 cut(s)	235, 428
AsuHPI	GGTGA	5 cut(s)	180, 244, 281, 743, 880
AvaII	GGWCC	1 cut(s)	235
AxyI	CCTNAGG	1 cut(s)	940
BanII	GRGCYC	2 cut(s)	111, 342
Bbv12I	GWGCWC	2 cut(s)	111, 342
BccI	CCATC	3 cut(s)	312, 349, 506
BciVI	GTATCC	1 cut(s)	657
BcoDI	GTCTC	1 cut(s)	362
BfaI	CTAG	2 cut(s)	315, 347
BfmI	CTRYAG	1 cut(s)	12
BfoI	RGCGCY	1 cut(s)	701
BfuI	GTATCC	1 cut(s)	657
BglII	AGATCT	1 cut(s)	95
BisI	GCNGC	2 cut(s)	12, 427
BlsI	GCNGC	2 cut(s)	13, 428
Bme18I	GGWCC	1 cut(s)	235
BmgBI	CACGTC	1 cut(s)	583
BmgT120I	GGNCC	2 cut(s)	235, 428
BmiI	GGNNCC	1 cut(s)	390
BmsI	GCATC	5 cut(s)	194, 228, 672, 757, 1023
BpmI	CTGGAG	1 cut(s)	820
BpuEI	CTTGAG	2 cut(s)	473, 911
BsaI	GGTCTC	1 cut(s)	362
BsaJI	CCNNGG	3 cut(s)	84, 392, 709
BsaWI	WCCGGW	1 cut(s)	850
BsaXI	ACNNNNNCTCC	2 cut(s)	334, 364
Bsc4I	CCNNNNNNNGG	1 cut(s)	444
Bse118I	RCCGGY	2 cut(s)	287, 700
Bse1I	ACTGG	5 cut(s)	409, 597, 619, 803, 865
Bse21I	CCTNAGG	1 cut(s)	940
BseDI	CCNNGG	3 cut(s)	84, 392, 709
BseGI	GGATG	2 cut(s)	28, 604
BseLI	CCNNNNNNNGG	1 cut(s)	444
BseMII	CTCAG	5 cut(s)	26, 270, 348, 951, 954
BseNI	ACTGG	5 cut(s)	409, 597, 619, 803, 865
BseYI	CCCAGC	1 cut(s)	650
Bsh1236I	CGCG	2 cut(s)	426, 459
BshFI	GGCC	3 cut(s)	42, 291, 429
BsiHKAI	GWGCWC	2 cut(s)	111, 342
BsiSI	CCGG	6 cut(s)	241, 288, 558, 701, 838, 851
BslFI	GGGAC	1 cut(s)	625
BslI	CCNNNNNNNGG	1 cut(s)	444
BsmAI	GTCTC	1 cut(s)	362
BsmFI	GGGAC	1 cut(s)	625
BsnI	GGCC	3 cut(s)	42, 291, 429
Bso31I	GGTCTC	1 cut(s)	362
Bsp1286I	GDGCHC	2 cut(s)	111, 342
Bsp1407I	TGTACA	1 cut(s)	524
Bsp143I	GATC	3 cut(s)	95, 673, 916
Bsp19I	CCATGG	3 cut(s)	84, 392, 709
BspACI	CCGC	7 cut(s)	112, 226, 238, 255, 426, 629, 784
BspANI	GGCC	3 cut(s)	42, 291, 429
BspCNI	CTCAG	5 cut(s)	27, 271, 347, 952, 953
BspFNI	CGCG	2 cut(s)	426, 459
BspHI	TCATGA	1 cut(s)	777
BspLI	GGNNCC	1 cut(s)	390
BspMAI	CTGCAG	1 cut(s)	16
BspTNI	GGTCTC	1 cut(s)	362
BsrFI	RCCGGY	2 cut(s)	287, 700
BsrGI	TGTACA	1 cut(s)	524
BsrI	ACTGG	5 cut(s)	409, 597, 619, 803, 865
BssAI	RCCGGY	2 cut(s)	287, 700
BssECI	CCNNGG	3 cut(s)	84, 392, 709
BssMI	GATC	3 cut(s)	95, 673, 916
BssT1I	CCWWGG	3 cut(s)	84, 392, 709
Bst4CI	ACNGT	2 cut(s)	269, 401
BstAUI	TGTACA	1 cut(s)	524
BstC8I	GCNNGC	2 cut(s)	217, 994
BstDEI	CTNAG	6 cut(s)	35, 279, 334, 531, 940, 960
BstDSI	CCRYGG	3 cut(s)	84, 392, 709
BstENI	CCTNNNNNAGG	1 cut(s)	442
BstF5I	GGATG	2 cut(s)	28, 604
BstFNI	CGCG	2 cut(s)	426, 459
BstH2I	RGCGCY	1 cut(s)	701
BstHHI	GCGC	5 cut(s)	437, 451, 459, 623, 700
BstKTI	GATC	3 cut(s)	98, 676, 919
BstMAI	GTCTC	1 cut(s)	362
BstMBI	GATC	3 cut(s)	95, 673, 916
BstMWI	GCNNNNNNNGC	7 cut(s)	216, 432, 527, 554, 660, 790, 1002
BstNSI	RCATGY	5 cut(s)	67, 686, 725, 739, 913
BstSFI	CTRYAG	1 cut(s)	12
BstUI	CGCG	2 cut(s)	426, 459
BstX2I	RGATCY	1 cut(s)	95
BstYI	RGATCY	1 cut(s)	95
Bsu36I	CCTNAGG	1 cut(s)	940
BsuI	GTATCC	1 cut(s)	657
BsuRI	GGCC	3 cut(s)	42, 291, 429
BtgI	CCRYGG	3 cut(s)	84, 392, 709
BtrI	CACGTC	1 cut(s)	583
BtsCI	GGATG	2 cut(s)	28, 604
BtsI	GCAGTG	1 cut(s)	630
BtsIMutI	CAGTG	4 cut(s)	397, 416, 590, 630
Cac8I	GCNNGC	2 cut(s)	217, 994
CciI	TCATGA	1 cut(s)	777
CfoI	GCGC	5 cut(s)	437, 451, 459, 623, 700
Cfr10I	RCCGGY	2 cut(s)	287, 700
Cfr13I	GGNCC	2 cut(s)	235, 428
CseI	GACGC	1 cut(s)	805
Csp6I	GTAC	3 cut(s)	61, 525, 706
CspCI	CAANNNNNGTGG	2 cut(s)	576, 611
CviQI	GTAC	3 cut(s)	61, 525, 706
DdeI	CTNAG	6 cut(s)	35, 279, 334, 531, 940, 960
DpnI	GATC	3 cut(s)	97, 675, 918
DpnII	GATC	3 cut(s)	95, 673, 916
DrdI	GACNNNNNNGTC	1 cut(s)	310
DseDI	GACNNNNNNGTC	1 cut(s)	310
EciI	GGCGGA	2 cut(s)	227, 644
Ecl136II	GAGCTC	2 cut(s)	109, 340
Eco130I	CCWWGG	3 cut(s)	84, 392, 709
Eco24I	GRGCYC	2 cut(s)	111, 342
Eco31I	GGTCTC	1 cut(s)	362
Eco32I	GATATC	2 cut(s)	124, 202
Eco47I	GGWCC	1 cut(s)	235
Eco53kI	GAGCTC	2 cut(s)	109, 340
Eco81I	CCTNAGG	1 cut(s)	940
EcoICRI	GAGCTC	2 cut(s)	109, 340
EcoNI	CCTNNNNNAGG	1 cut(s)	442
EcoRV	GATATC	2 cut(s)	124, 202
EcoT14I	CCWWGG	3 cut(s)	84, 392, 709
EcoT38I	GRGCYC	2 cut(s)	111, 342
ErhI	CCWWGG	3 cut(s)	84, 392, 709
FalI	AAGNNNNNCTT	2 cut(s)	537, 569
FaqI	GGGAC	1 cut(s)	625
FauI	CCCGC	1 cut(s)	777
Fnu4HI	GCNGC	2 cut(s)	12, 427
FokI	GGATG	2 cut(s)	35, 611
FriOI	GRGCYC	2 cut(s)	111, 342
Fsp4HI	GCNGC	2 cut(s)	12, 427
FspBI	CTAG	2 cut(s)	315, 347
GlaI	GCGC	5 cut(s)	436, 450, 458, 622, 699
GluI	GCNGC	2 cut(s)	12, 427
GsaI	CCCAGC	1 cut(s)	654
GsuI	CTGGAG	1 cut(s)	820
HaeII	RGCGCY	1 cut(s)	701
HaeIII	GGCC	3 cut(s)	42, 291, 429
HapII	CCGG	6 cut(s)	241, 288, 558, 701, 838, 851
HgaI	GACGC	1 cut(s)	805
HhaI	GCGC	5 cut(s)	437, 451, 459, 623, 700
Hin6I	GCGC	5 cut(s)	435, 449, 457, 621, 698
HinP1I	GCGC	5 cut(s)	435, 449, 457, 621, 698
HincII	GTYRAC	1 cut(s)	303
HindII	GTYRAC	1 cut(s)	303
HinfI	GANTC	5 cut(s)	80, 179, 275, 304, 332
HpaII	CCGG	6 cut(s)	241, 288, 558, 701, 838, 851
HphI	GGTGA	5 cut(s)	180, 244, 281, 743, 880
Hpy166II	GTNNAC	4 cut(s)	303, 525, 706, 880
Hpy188I	TCNGA	6 cut(s)	36, 160, 280, 337, 354, 481
Hpy188III	TCNNGA	4 cut(s)	197, 315, 778, 820
Hpy8I	GTNNAC	4 cut(s)	303, 525, 706, 880
HpyAV	CCTTC	2 cut(s)	184, 634
HpyCH4III	ACNGT	2 cut(s)	269, 401
HpyCH4IV	ACGT	3 cut(s)	152, 582, 882
HpyCH4V	TGCA	8 cut(s)	14, 146, 185, 328, 692, 770, 793, 932
HpyF10VI	GCNNNNNNNGC	7 cut(s)	216, 432, 527, 554, 660, 790, 1002
HpyF3I	CTNAG	6 cut(s)	35, 279, 334, 531, 940, 960
HpySE526I	ACGT	3 cut(s)	152, 582, 882
HspAI	GCGC	5 cut(s)	435, 449, 457, 621, 698
Kzo9I	GATC	3 cut(s)	95, 673, 916
LmnI	GCTCC	5 cut(s)	106, 114, 355, 394, 801
LweI	GCATC	5 cut(s)	194, 228, 672, 757, 1023
MaeI	CTAG	2 cut(s)	315, 347
MaeII	ACGT	3 cut(s)	152, 582, 882
MaeIII	GTNAC	2 cut(s)	717, 731
MalI	GATC	3 cut(s)	97, 675, 918
MboI	GATC	3 cut(s)	95, 673, 916
MboII	GAAGA	4 cut(s)	241, 284, 841, 988
MflI	RGATCY	1 cut(s)	95
MhlI	GDGCHC	2 cut(s)	111, 342
MluCI	AATT	5 cut(s)	17, 470, 771, 873, 1020
MlyI	GAGTC	3 cut(s)	173, 298, 326
MmeI	TCCRAC	2 cut(s)	706, 963
MroXI	GAANNNNTTC	1 cut(s)	248
MseI	TTAA	2 cut(s)	441, 657
MslI	CAYNNNNRTG	3 cut(s)	135, 141, 267
MspA1I	CMGCKG	1 cut(s)	11
MspI	CCGG	6 cut(s)	241, 288, 558, 701, 838, 851
MvnI	CGCG	2 cut(s)	426, 459
MwoI	GCNNNNNNNGC	7 cut(s)	216, 432, 527, 554, 660, 790, 1002
NcoI	CCATGG	3 cut(s)	84, 392, 709
NdeII	GATC	3 cut(s)	95, 673, 916
NlaIV	GGNNCC	1 cut(s)	390
NmeAIII	GCCGAG	1 cut(s)	48
NmuCI	GTSAC	2 cut(s)	717, 731
NspI	RCATGY	5 cut(s)	67, 686, 725, 739, 913
PagI	TCATGA	1 cut(s)	777
PciI	ACATGT	3 cut(s)	682, 721, 735
PcsI	WCGNNNNNNNCGW	1 cut(s)	801
PdmI	GAANNNNTTC	1 cut(s)	248
PfeI	GAWTC	2 cut(s)	80, 275
PflFI	GACNNNGTC	1 cut(s)	154
PkrI	GCNGC	2 cut(s)	13, 428
PleI	GAGTC	3 cut(s)	173, 298, 326
PpsI	GAGTC	3 cut(s)	173, 298, 326
PscI	ACATGT	3 cut(s)	682, 721, 735
Psp124BI	GAGCTC	2 cut(s)	111, 342
PspFI	CCCAGC	1 cut(s)	650
PspN4I	GGNNCC	1 cut(s)	390
PspPI	GGNCC	2 cut(s)	235, 428
PstI	CTGCAG	1 cut(s)	16
PsuI	RGATCY	1 cut(s)	95
PsyI	GACNNNGTC	1 cut(s)	154
PvuII	CAGCTG	1 cut(s)	11
RsaI	GTAC	3 cut(s)	62, 526, 707
RsaNI	GTAC	3 cut(s)	61, 525, 706
RseI	CAYNNNNRTG	3 cut(s)	135, 141, 267
SacI	GAGCTC	2 cut(s)	111, 342
SaqAI	TTAA	2 cut(s)	441, 657
SatI	GCNGC	2 cut(s)	12, 427
Sau3AI	GATC	3 cut(s)	95, 673, 916
Sau96I	GGNCC	2 cut(s)	235, 428
SchI	GAGTC	3 cut(s)	173, 298, 326
SduI	GDGCHC	2 cut(s)	111, 342
SfaNI	GCATC	5 cut(s)	194, 228, 672, 757, 1023
SfcI	CTRYAG	1 cut(s)	12
SgrAI	CRCCGGYG	1 cut(s)	700
SinI	GGWCC	1 cut(s)	235
SmiMI	CAYNNNNRTG	3 cut(s)	135, 141, 267
SmlI	CTYRAG	2 cut(s)	488, 890
SmoI	CTYRAG	2 cut(s)	488, 890
Sse9I	AATT	5 cut(s)	17, 470, 771, 873, 1020
SsiI	CCGC	7 cut(s)	112, 226, 238, 255, 426, 629, 784
SspMI	CTAG	2 cut(s)	315, 347
SstI	GAGCTC	2 cut(s)	111, 342
StyI	CCWWGG	3 cut(s)	84, 392, 709
TaaI	ACNGT	2 cut(s)	269, 401
TaiI	ACGT	3 cut(s)	155, 585, 885
TaqI	TCGA	1 cut(s)	177
TasI	AATT	5 cut(s)	17, 470, 771, 873, 1020
TatI	WGTACW	2 cut(s)	60, 524
TauI	GCSGC	1 cut(s)	429
TfiI	GAWTC	2 cut(s)	80, 275
Tru1I	TTAA	2 cut(s)	441, 657
Tru9I	TTAA	2 cut(s)	441, 657
TscAI	CASTG	4 cut(s)	404, 416, 597, 630
TseFI	GTSAC	2 cut(s)	717, 731
TseI	GCWGC	1 cut(s)	11
Tsp45I	GTSAC	2 cut(s)	717, 731
TspDTI	ATGAA	4 cut(s)	39, 557, 766, 794
TspRI	CASTG	4 cut(s)	404, 416, 597, 630
Tth111I	GACNNNGTC	1 cut(s)	154
VpaK11BI	GGWCC	1 cut(s)	235
XagI	CCTNNNNNAGG	1 cut(s)	442
XapI	RAATTY	1 cut(s)	1020
XbaI	TCTAGA	1 cut(s)	314
XceI	RCATGY	5 cut(s)	67, 686, 725, 739, 913
XmnI	GAANNNNTTC	1 cut(s)	248
XspI	CTAG	2 cut(s)	315, 347

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.