Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr2

Orthogroup ID

OG0001688

Physical Location & Seq

Genomic Coordinates Forward (+)

14691035 .. 14692236

Gene Structure 1202 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000007220

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1080 bp

ATGGAAGCAGTTACAGAATTGGATGAAGCAACTCTAAGAGGCCAAGCAGATGTATGGAAGTACATGTTCGGCTTTGCAGATTCCATGGCTTTGAAATGTGCTGTGGAGCTCCGGATACCAGATATCATACATTCTCATGGTCATGCATTGACCTTGTCTGAAATAGCCTCGTCCTTCGACTCTGCATCACCCTCTCCAGACATCACATGCCTCTCTCGCATCATGCAGTTGCTGGTCCGCAGGAACATCTTCACCGCACATCGTGACGGTGGAGATTCTGGAGAAACCCTCTACGGCTTGACTCACTCATCTAGATGGCTCGTACAGGACTCAGAGCTCACCCTAGCTCCGATGGTTCTCATGGAGACAAATCCTACTCTAATGGCACCATGGCACTGTTTCAGCCAGTGCGTCAAGCAAGGTGGCCCATGCGCCTTTGAAAAAGCGCATGGCTGCGACATTTGGCAATTCTTCTCCGAAAAACCCGAGTTCAACCGATTGTTCAACGATGGCATGTCGTGCGCTACTAAGATTACAATGAAAGCAATACTCAAGGGATATAAGGGTGGGTTTGATGACATGGCAACACTGGTGGATGTTGGCGGTGGGACTGGAAGCTCAGTGGCGGAGATTGTGAAGTTGTATCCCAGCATTAAGGGCATCAACTTTGATCTACCACATGTAGTTGCAACAGCCCCGGTGTACCATGGGGTGTCACATGTTGGAGGTGACATGTTTGATGAAGGCAATATTCCAAACACTGATGCAATTTTTATGAAGTTGATTATGCACGACTGGAATGACAGCGATTGCATCAAGATATTGAAAAACTGTCGAAAGGCGATATCGGAGAGAATTGGCAAGGTGATTATTGTGGACGTTGTTCTACAGCCAAATGGTGATGGCATGTTCGACGACACAGGCTTGGTGTTTGATTTGGTAATGATTGCACACGCCTCAGGTGGAAAGGAGAGGACTGAGAGTGAATGGAAGAAGATGTTGGAACAAGCAGGCTTCCCTCGTTACAAAATCATCAAAATCCCAGATTTATTGTCCATTATTGAGGCCTTCCCTGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dimerisation Methyltransf_2

Protein Analysis

360

Amino Acids

39.57

Weight (kDa)

5.36

Isoelectric Point (pI)

40.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dimerisation	PF08100	19 - 110	6.9e-21	O-methyltransferase dimerisation domain
Methyltransf_2	PF00891	131 - 339	1.3e-59	O-methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001688)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g17220 FvH4_6g45070
malus_domestica	MD09G1089200.v1.1 MD09G1089800.v1.1 MD09G1090100.v1.1 MD09G1090200.v1.1 MD17G1079200.v1.1
prunus_persica	Prupe.3G235300_v2.0.a1 Prupe.3G235500_v2.0.a1
pyrus_communis	pycom09g01490 pycom17g07830
rosa_chinensis	RchiOBHm_Chr1g0324661 RchiOBHm_Chr2g0139131 RchiOBHm_Chr4g0427641 RchiOBHm_Chr4g0427651
rosa_laevigata	RLG00000007219 RLG00000007220 RLG00000019790 RLG00000021346 RLG00000021347
rosa_multiflora	Rmu_co8132516.1_g000001 Rmu_sc0001803.1_g000030 Rmu_sc0003399.1_g000006 Rmu_sc0009627.1_g000012 Rmu_sc0009627.1_g000013
rosa_roxburghii	Rroxscaffold_2G00105640 Rroxscaffold_5G00369270 Rroxscaffold_5G00369300
rosa_rugosa	Rorug02G0354700 Rorug02G0498000 Rorug04G0219000
rosa_samantha	Rh1CG065100 Rh1DG069400 Rh1DG070200 Rh2AG405100 Rh2BG415000 Rh2CG391300 Rh2DG424900 Rh4AG275500 Rh4BG281400 Rh4BG281500 Rh4CG296800 Rh4CG296900 Rh4DG278800 Rh4DG278900
rosa_wichuraiana	Rw1G005480 Rw2G033080 Rw4G023890 Rw4G023900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	385
AccIII	TCCGGA	1 cut(s)	111
AciI	CCGC	4 cut(s)	238, 255, 603, 626
AdeI	CACNNNGTG	1 cut(s)	263
AfaI	GTAC	3 cut(s)	62, 324, 704
AflIII	ACRYGT	4 cut(s)	63, 679, 718, 732
AgsI	TTSAA	5 cut(s)	94, 440, 493, 505, 826
AjuI	GAANNNNNNNTTGG	2 cut(s)	983, 1015
AluBI	AGCT	4 cut(s)	109, 337, 347, 618
AluI	AGCT	4 cut(s)	109, 337, 347, 618
Alw21I	GWGCWC	2 cut(s)	111, 339
Alw26I	GTCTC	1 cut(s)	359
AlwNI	CAGNNNCTG	1 cut(s)	232
Ama87I	CYCGRG	1 cut(s)	485
Aor13HI	TCCGGA	1 cut(s)	111
AoxI	GGCC	3 cut(s)	40, 424, 1065
ApeKI	GCWGC	1 cut(s)	453
Asp700I	GAANNNNTTC	1 cut(s)	248
AspLEI	GCGC	3 cut(s)	434, 448, 524
AspS9I	GGNCC	2 cut(s)	235, 425
AsuC2I	CCSGG	1 cut(s)	698
AsuHPI	GGTGA	6 cut(s)	180, 244, 331, 740, 877, 911
AvaI	CYCGRG	1 cut(s)	485
AvaII	GGWCC	1 cut(s)	235
AxyI	CCTNAGG	1 cut(s)	958
BanI	GGYRCC	1 cut(s)	385
BanII	GRGCYC	2 cut(s)	111, 339
Bbv12I	GWGCWC	2 cut(s)	111, 339
BbvI	GCAGC	1 cut(s)	440
BccI	CCATC	4 cut(s)	309, 346, 503, 896
BceAI	ACGGC	1 cut(s)	310
BciVI	GTATCC	2 cut(s)	108, 654
BcnI	CCSGG	1 cut(s)	698
BcoDI	GTCTC	1 cut(s)	359
BfaI	CTAG	2 cut(s)	312, 344
BfmI	CTRYAG	1 cut(s)	887
BfuI	GTATCC	2 cut(s)	108, 654
BisI	GCNGC	1 cut(s)	454
BlsI	GCNGC	1 cut(s)	455
Bme1390I	CCNGG	1 cut(s)	698
Bme18I	GGWCC	1 cut(s)	235
BmeT110I	CYCGRG	1 cut(s)	485
BmgT120I	GGNCC	2 cut(s)	235, 425
BmiI	GGNNCC	1 cut(s)	387
BmrFI	CCNGG	1 cut(s)	698
BmsI	GCATC	5 cut(s)	194, 228, 669, 754, 822
BplI	GAGNNNNNCTC	2 cut(s)	273, 305
BpmI	CTGGAG	2 cut(s)	180, 300
BpuEI	CTTGAG	1 cut(s)	536
BpuMI	CCSGG	1 cut(s)	698
BsaJI	CCNNGG	4 cut(s)	84, 389, 696, 706
BsaWI	WCCGGW	1 cut(s)	111
BsaXI	ACNNNNNCTCC	2 cut(s)	331, 361
Bse1I	ACTGG	4 cut(s)	406, 594, 616, 800
Bse21I	CCTNAGG	1 cut(s)	958
BseAI	TCCGGA	1 cut(s)	111
BseDI	CCNNGG	4 cut(s)	84, 389, 696, 706
BseGI	GGATG	2 cut(s)	28, 601
BseMII	CTCAG	4 cut(s)	345, 633, 969, 972
BseNI	ACTGG	4 cut(s)	406, 594, 616, 800
BseXI	GCAGC	1 cut(s)	440
BseYI	CCCAGC	1 cut(s)	647
BshFI	GGCC	3 cut(s)	42, 426, 1067
BshNI	GGYRCC	1 cut(s)	385
BsiHKAI	GWGCWC	2 cut(s)	111, 339
BsiHKCI	CYCGRG	1 cut(s)	485
BsiSI	CCGG	2 cut(s)	112, 698
BslFI	GGGAC	1 cut(s)	622
BsmAI	GTCTC	1 cut(s)	359
BsmFI	GGGAC	1 cut(s)	622
BsnI	GGCC	3 cut(s)	42, 426, 1067
BsoBI	CYCGRG	1 cut(s)	485
Bsp1286I	GDGCHC	2 cut(s)	111, 339
Bsp13I	TCCGGA	1 cut(s)	111
Bsp143I	GATC	1 cut(s)	670
Bsp19I	CCATGG	3 cut(s)	84, 389, 706
BspACI	CCGC	4 cut(s)	238, 255, 603, 626
BspANI	GGCC	3 cut(s)	42, 426, 1067
BspCNI	CTCAG	4 cut(s)	344, 632, 970, 971
BspEI	TCCGGA	1 cut(s)	111
BspLI	GGNNCC	1 cut(s)	387
BspT107I	GGYRCC	1 cut(s)	385
BsrI	ACTGG	4 cut(s)	406, 594, 616, 800
BssECI	CCNNGG	4 cut(s)	84, 389, 696, 706
BssMI	GATC	1 cut(s)	670
BssT1I	CCWWGG	3 cut(s)	84, 389, 706
Bst4CI	ACNGT	3 cut(s)	269, 398, 833
BstAPI	GCANNNNNTGC	1 cut(s)	519
BstC8I	GCNNGC	1 cut(s)	1012
BstDEI	CTNAG	6 cut(s)	35, 331, 528, 619, 958, 978
BstDSI	CCRYGG	3 cut(s)	84, 389, 706
BstF5I	GGATG	2 cut(s)	28, 601
BstHHI	GCGC	3 cut(s)	434, 448, 524
BstKTI	GATC	1 cut(s)	673
BstMAI	GTCTC	1 cut(s)	359
BstMBI	GATC	1 cut(s)	670
BstMWI	GCNNNNNNNGC	3 cut(s)	216, 519, 657
BstNSI	RCATGY	7 cut(s)	67, 210, 517, 683, 722, 736, 910
BstSCI	CCNGG	1 cut(s)	696
BstSFI	CTRYAG	1 cut(s)	887
BstV1I	GCAGC	1 cut(s)	440
Bsu36I	CCTNAGG	1 cut(s)	958
BsuI	GTATCC	2 cut(s)	108, 654
BsuRI	GGCC	3 cut(s)	42, 426, 1067
BtgI	CCRYGG	3 cut(s)	84, 389, 706
BtsCI	GGATG	2 cut(s)	28, 601
BtsIMutI	CAGTG	5 cut(s)	394, 413, 587, 627, 759
Cac8I	GCNNGC	1 cut(s)	1012
CaiI	CAGNNNCTG	1 cut(s)	232
CfoI	GCGC	3 cut(s)	434, 448, 524
Cfr13I	GGNCC	2 cut(s)	235, 425
CseI	GACGC	1 cut(s)	400
Csp6I	GTAC	3 cut(s)	61, 323, 703
CspCI	CAANNNNNGTGG	4 cut(s)	403, 438, 573, 608
CviQI	GTAC	3 cut(s)	61, 323, 703
DdeI	CTNAG	6 cut(s)	35, 331, 528, 619, 958, 978
DpnI	GATC	1 cut(s)	672
DpnII	GATC	1 cut(s)	670
DraIII	CACNNNGTG	1 cut(s)	263
EciI	GGCGGA	1 cut(s)	641
Ecl136II	GAGCTC	2 cut(s)	109, 337
Eco130I	CCWWGG	3 cut(s)	84, 389, 706
Eco147I	AGGCCT	1 cut(s)	1067
Eco24I	GRGCYC	2 cut(s)	111, 339
Eco32I	GATATC	2 cut(s)	124, 846
Eco47I	GGWCC	1 cut(s)	235
Eco53kI	GAGCTC	2 cut(s)	109, 337
Eco81I	CCTNAGG	1 cut(s)	958
Eco88I	CYCGRG	1 cut(s)	485
EcoICRI	GAGCTC	2 cut(s)	109, 337
EcoRV	GATATC	2 cut(s)	124, 846
EcoT14I	CCWWGG	3 cut(s)	84, 389, 706
EcoT22I	ATGCAT	1 cut(s)	148
EcoT38I	GRGCYC	2 cut(s)	111, 339
ErhI	CCWWGG	3 cut(s)	84, 389, 706
FaqI	GGGAC	1 cut(s)	622
Fnu4HI	GCNGC	1 cut(s)	454
FokI	GGATG	2 cut(s)	35, 608
FriOI	GRGCYC	2 cut(s)	111, 339
Fsp4HI	GCNGC	1 cut(s)	454
FspBI	CTAG	2 cut(s)	312, 344
GlaI	GCGC	3 cut(s)	433, 447, 523
GluI	GCNGC	1 cut(s)	454
GsaI	CCCAGC	1 cut(s)	651
GsuI	CTGGAG	2 cut(s)	180, 300
HaeIII	GGCC	3 cut(s)	42, 426, 1067
HapII	CCGG	2 cut(s)	112, 698
HgaI	GACGC	1 cut(s)	400
HhaI	GCGC	3 cut(s)	434, 448, 524
Hin6I	GCGC	3 cut(s)	432, 446, 522
HinP1I	GCGC	3 cut(s)	432, 446, 522
HinfI	GANTC	5 cut(s)	80, 179, 275, 301, 329
HpaII	CCGG	2 cut(s)	112, 698
HphI	GGTGA	6 cut(s)	180, 244, 331, 740, 877, 911
Hpy166II	GTNNAC	2 cut(s)	703, 877
Hpy188I	TCNGA	5 cut(s)	160, 334, 351, 478, 850
Hpy188III	TCNNGA	6 cut(s)	112, 197, 263, 279, 312, 817
Hpy8I	GTNNAC	2 cut(s)	703, 877
Hpy99I	CGWCG	1 cut(s)	917
HpyAV	CCTTC	3 cut(s)	184, 737, 1078
HpyCH4III	ACNGT	3 cut(s)	269, 398, 833
HpyCH4IV	ACGT	1 cut(s)	879
HpyCH4V	TGCA	9 cut(s)	77, 146, 185, 226, 689, 767, 790, 813, 950
HpyF10VI	GCNNNNNNNGC	3 cut(s)	216, 519, 657
HpyF3I	CTNAG	6 cut(s)	35, 331, 528, 619, 958, 978
HpySE526I	ACGT	1 cut(s)	879
HspAI	GCGC	3 cut(s)	432, 446, 522
Kpn2I	TCCGGA	1 cut(s)	111
Kzo9I	GATC	1 cut(s)	670
LmnI	GCTCC	3 cut(s)	106, 114, 352
Lsp1109I	GCAGC	1 cut(s)	440
LweI	GCATC	5 cut(s)	194, 228, 669, 754, 822
MaeI	CTAG	2 cut(s)	312, 344
MaeII	ACGT	1 cut(s)	879
MaeIII	GTNAC	5 cut(s)	10, 263, 714, 728, 1022
MalI	GATC	1 cut(s)	672
MboI	GATC	1 cut(s)	670
MboII	GAAGA	4 cut(s)	241, 463, 1003, 1006
MhlI	GDGCHC	2 cut(s)	111, 339
MluCI	AATT	4 cut(s)	17, 467, 768, 855
MlyI	GAGTC	3 cut(s)	173, 295, 323
MmeI	TCCRAC	2 cut(s)	703, 981
Mph1103I	ATGCAT	1 cut(s)	148
MroI	TCCGGA	1 cut(s)	111
MroXI	GAANNNNTTC	1 cut(s)	248
MseI	TTAA	1 cut(s)	654
MslI	CAYNNNNRTG	3 cut(s)	135, 141, 313
MspI	CCGG	2 cut(s)	112, 698
MspR9I	CCNGG	1 cut(s)	698
MwoI	GCNNNNNNNGC	3 cut(s)	216, 519, 657
NciI	CCSGG	1 cut(s)	698
NcoI	CCATGG	3 cut(s)	84, 389, 706
NdeII	GATC	1 cut(s)	670
NlaIV	GGNNCC	1 cut(s)	387
NmuCI	GTSAC	3 cut(s)	263, 714, 728
NsiI	ATGCAT	1 cut(s)	148
NspI	RCATGY	7 cut(s)	67, 210, 517, 683, 722, 736, 910
PceI	AGGCCT	1 cut(s)	1067
PciI	ACATGT	4 cut(s)	63, 679, 718, 732
PdmI	GAANNNNTTC	1 cut(s)	248
PfeI	GAWTC	2 cut(s)	80, 275
PflFI	GACNNNGTC	1 cut(s)	154
PkrI	GCNGC	1 cut(s)	455
PleI	GAGTC	3 cut(s)	173, 295, 323
PpsI	GAGTC	3 cut(s)	173, 295, 323
PscI	ACATGT	4 cut(s)	63, 679, 718, 732
Psp124BI	GAGCTC	2 cut(s)	111, 339
PspFI	CCCAGC	1 cut(s)	647
PspN4I	GGNNCC	1 cut(s)	387
PspPI	GGNCC	2 cut(s)	235, 425
PstNI	CAGNNNCTG	1 cut(s)	232
PsyI	GACNNNGTC	1 cut(s)	154
RsaI	GTAC	3 cut(s)	62, 324, 704
RsaNI	GTAC	3 cut(s)	61, 323, 703
RseI	CAYNNNNRTG	3 cut(s)	135, 141, 313
SacI	GAGCTC	2 cut(s)	111, 339
SaqAI	TTAA	1 cut(s)	654
SatI	GCNGC	1 cut(s)	454
Sau3AI	GATC	1 cut(s)	670
Sau96I	GGNCC	2 cut(s)	235, 425
SchI	GAGTC	3 cut(s)	173, 295, 323
ScrFI	CCNGG	1 cut(s)	698
SduI	GDGCHC	2 cut(s)	111, 339
SfaNI	GCATC	5 cut(s)	194, 228, 669, 754, 822
SfcI	CTRYAG	1 cut(s)	887
SinI	GGWCC	1 cut(s)	235
SmiMI	CAYNNNNRTG	3 cut(s)	135, 141, 313
SmlI	CTYRAG	1 cut(s)	551
SmoI	CTYRAG	1 cut(s)	551
Sse9I	AATT	4 cut(s)	17, 467, 768, 855
SseBI	AGGCCT	1 cut(s)	1067
SsiI	CCGC	4 cut(s)	238, 255, 603, 626
SspI	AATATT	1 cut(s)	751
SspMI	CTAG	2 cut(s)	312, 344
SstI	GAGCTC	2 cut(s)	111, 339
StuI	AGGCCT	1 cut(s)	1067
StyD4I	CCNGG	1 cut(s)	696
StyI	CCWWGG	3 cut(s)	84, 389, 706
TaaI	ACNGT	3 cut(s)	269, 398, 833
TaiI	ACGT	1 cut(s)	882
TaqI	TCGA	3 cut(s)	177, 835, 912
TasI	AATT	4 cut(s)	17, 467, 768, 855
TatI	WGTACW	1 cut(s)	60
TfiI	GAWTC	2 cut(s)	80, 275
Tru1I	TTAA	1 cut(s)	654
Tru9I	TTAA	1 cut(s)	654
TscAI	CASTG	5 cut(s)	401, 413, 594, 627, 766
TseFI	GTSAC	3 cut(s)	263, 714, 728
TseI	GCWGC	1 cut(s)	453
Tsp45I	GTSAC	3 cut(s)	263, 714, 728
TspDTI	ATGAA	4 cut(s)	39, 554, 756, 791
TspRI	CASTG	5 cut(s)	401, 413, 594, 627, 766
Tth111I	GACNNNGTC	1 cut(s)	154
VpaK11BI	GGWCC	1 cut(s)	235
XbaI	TCTAGA	1 cut(s)	311
XceI	RCATGY	7 cut(s)	67, 210, 517, 683, 722, 736, 910
XmnI	GAANNNNTTC	1 cut(s)	248
XspI	CTAG	2 cut(s)	312, 344
Zsp2I	ATGCAT	1 cut(s)	148

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.