Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4A

Orthogroup ID

OG0001688

Physical Location & Seq

Genomic Coordinates Reverse (-)

59148480 .. 59154209

Gene Structure 5730 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4AG275500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1119 bp

ATGTTAGAACACTGTTCTAACAGAGATCGAAAACTTAAAATGGAAGCAGTTACAGAATTGGATGAAGCATCTCTAAGAGGCCAAGCAGATGTATGGAAGTACATGCTCGGCTTTGCAGATTCCATGGCTTTAAAATCTGCTGTGGAGCTCCGGATACCAGATATCATACACTCTCATGGTCATGCATTGACTTTGTCTGAAATAGCCTGCTCCTTCAACTCTGCATCACCCTCTCCAGACATCACATGCCTCTCTCGCATCATGCGGTTGCTGGTTCGCAGGAACATCTTCACCGCACATCCTGACGGTGGAGATTCCGGAGAAACCCTCTACGGGTTGACTCACTCGTCTAGATGGCTTGTACATGACTCGGAGTTCACTCTAGCTCCGATGGTTCTTCTGGAGACAAATCCTACTCTAATAGAGCCATGGCAATATTTCAGCCAATGTGTCAAGCAAGGCGCCCCATGCGCCTTTGAGAAAGCACATGGCCGCAACATTTGGCAATACTCCTCTGAAAAACCCGAGTTCAACCGATTGTTCAACGATGGCATGTCGTGCAGTACTAAGATTACAATGAAAGCAATAGTCACAGGATATAAGGGTGGGTTTGATGACTTGGCAACACTGGTGGATGTTGGTGGTGGGACTGGAAGCGCAGTGGCGGAGATTGTGAAGTTGTATCCCAGCATTAAGGGCATCAACTTTGATCTGCCACATGTAGTTGCAACAGCACCGGTGTACCATGGGGTGTCACATGTTGGAGGTGACATGTTTGATGAGGGCAATATTCCAAACACCGATGCTATTTTCATGAAGTGGATTATGCACGACTGGAGCGACAGCGATTGTGTCAAGATATTGAAAAACTGTCGAAAGGCGATACCGGAAAGAAGTGGCAAGGTGATTATTGTGGACGTTGTTCTAGAGCCAAATGGTGATGGCATGTTCGACGACACAGGCTTGGTGTTTGATTTGCTAATGATTGCACACACCTCAGGTGGAAAGGAGAGGACTGAGAGTGAATGGAAGAAGATTTTGGAACAAGCAGGCTTCCCTCGTTACAAAATCATCAAAATTCCAGCTTTATTGTCCATTATTGAGGCCTTCCCTGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dimerisation Methyltransf_2

Protein Analysis

372

Amino Acids

41.18

Weight (kDa)

5.72

Isoelectric Point (pI)

38.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dimerisation	PF08100	32 - 122	1.4e-19	O-methyltransferase dimerisation domain
Methyltransf_2	PF00891	144 - 352	1.6e-63	O-methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001688)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g17220 FvH4_6g45070
malus_domestica	MD09G1089200.v1.1 MD09G1089800.v1.1 MD09G1090100.v1.1 MD09G1090200.v1.1 MD17G1079200.v1.1
prunus_persica	Prupe.3G235300_v2.0.a1 Prupe.3G235500_v2.0.a1
pyrus_communis	pycom09g01490 pycom17g07830
rosa_chinensis	RchiOBHm_Chr1g0324661 RchiOBHm_Chr2g0139131 RchiOBHm_Chr4g0427641 RchiOBHm_Chr4g0427651
rosa_laevigata	RLG00000007219 RLG00000007220 RLG00000019790 RLG00000021346 RLG00000021347
rosa_multiflora	Rmu_co8132516.1_g000001 Rmu_sc0001803.1_g000030 Rmu_sc0003399.1_g000006 Rmu_sc0009627.1_g000012 Rmu_sc0009627.1_g000013
rosa_roxburghii	Rroxscaffold_2G00105640 Rroxscaffold_5G00369270 Rroxscaffold_5G00369300
rosa_rugosa	Rorug02G0354700 Rorug02G0498000 Rorug04G0219000
rosa_samantha	Rh1CG065100 Rh1DG069400 Rh1DG070200 Rh2AG405100 Rh2BG415000 Rh2CG391300 Rh2DG424900 Rh4AG275500 Rh4BG281400 Rh4BG281500 Rh4CG296800 Rh4CG296900 Rh4DG278800 Rh4DG278900
rosa_wichuraiana	Rw1G005480 Rw2G033080 Rw4G023890 Rw4G023900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	346
AccB1I	GGYRCC	1 cut(s)	461
AccIII	TCCGGA	2 cut(s)	150, 317
AciI	CCGC	4 cut(s)	265, 294, 493, 665
AcoI	YGGCCR	1 cut(s)	490
AcsI	RAATTY	1 cut(s)	1077
AcyI	GRCGYC	1 cut(s)	462
AfaI	GTAC	4 cut(s)	101, 363, 565, 743
AfiI	CCNNNNNNNGG	2 cut(s)	308, 333
AflIII	ACRYGT	3 cut(s)	718, 757, 771
AgeI	ACCGGT	1 cut(s)	736
AgsI	TTSAA	4 cut(s)	217, 532, 544, 865
AjuI	GAANNNNNNNTTGG	2 cut(s)	1022, 1054
AluBI	AGCT	3 cut(s)	148, 386, 1085
AluI	AGCT	3 cut(s)	148, 386, 1085
Alw21I	GWGCWC	1 cut(s)	150
Alw26I	GTCTC	1 cut(s)	398
Ama87I	CYCGRG	1 cut(s)	524
Aor13HI	TCCGGA	2 cut(s)	150, 317
AoxI	GGCC	3 cut(s)	79, 490, 1104
ApoI	RAATTY	1 cut(s)	1077
AsiGI	ACCGGT	1 cut(s)	736
Asp700I	GAANNNNTTC	1 cut(s)	287
AspLEI	GCGC	3 cut(s)	464, 473, 659
AsuHPI	GGTGA	5 cut(s)	219, 283, 779, 916, 950
AvaI	CYCGRG	1 cut(s)	524
AxyI	CCTNAGG	1 cut(s)	997
BaeI	ACNNNNGTAYC	2 cut(s)	725, 758
BanI	GGYRCC	1 cut(s)	461
BanII	GRGCYC	1 cut(s)	150
Bbv12I	GWGCWC	1 cut(s)	150
BccI	CCATC	4 cut(s)	348, 385, 542, 935
BciVI	GTATCC	2 cut(s)	147, 693
BcoDI	GTCTC	1 cut(s)	398
BfaI	CTAG	3 cut(s)	351, 383, 926
BfoI	RGCGCY	1 cut(s)	465
BfuI	GTATCC	2 cut(s)	147, 693
BisI	GCNGC	1 cut(s)	493
BlsI	GCNGC	1 cut(s)	494
BmcAI	AGTACT	1 cut(s)	565
BmeT110I	CYCGRG	1 cut(s)	524
BmiI	GGNNCC	1 cut(s)	463
BmsI	GCATC	5 cut(s)	77, 233, 267, 708, 793
BplI	GAGNNNNNCTC	2 cut(s)	312, 344
BpmI	CTGGAG	3 cut(s)	219, 422, 856
BsaHI	GRCGYC	1 cut(s)	462
BsaJI	CCNNGG	3 cut(s)	123, 428, 745
BsaWI	WCCGGW	4 cut(s)	150, 317, 736, 886
BsaXI	ACNNNNNCTCC	2 cut(s)	370, 400
Bsc4I	CCNNNNNNNGG	2 cut(s)	308, 333
Bse118I	RCCGGY	1 cut(s)	736
Bse1I	ACTGG	3 cut(s)	633, 655, 839
Bse21I	CCTNAGG	1 cut(s)	997
BseAI	TCCGGA	2 cut(s)	150, 317
BseDI	CCNNGG	3 cut(s)	123, 428, 745
BseGI	GGATG	3 cut(s)	67, 298, 640
BseLI	CCNNNNNNNGG	2 cut(s)	308, 333
BseMII	CTCAG	2 cut(s)	1008, 1011
BseNI	ACTGG	3 cut(s)	633, 655, 839
BseRI	GAGGAG	1 cut(s)	502
BseYI	CCCAGC	1 cut(s)	686
BsgI	GTGCAG	1 cut(s)	580
BshFI	GGCC	3 cut(s)	81, 492, 1106
BshNI	GGYRCC	1 cut(s)	461
BshTI	ACCGGT	1 cut(s)	736
BsiHKAI	GWGCWC	1 cut(s)	150
BsiHKCI	CYCGRG	1 cut(s)	524
BsiSI	CCGG	4 cut(s)	151, 318, 737, 887
BslFI	GGGAC	1 cut(s)	661
BslI	CCNNNNNNNGG	2 cut(s)	308, 333
BsmAI	GTCTC	1 cut(s)	398
BsmFI	GGGAC	1 cut(s)	661
BsnI	GGCC	3 cut(s)	81, 492, 1106
BsoBI	CYCGRG	1 cut(s)	524
Bsp1286I	GDGCHC	1 cut(s)	150
Bsp13I	TCCGGA	2 cut(s)	150, 317
Bsp1407I	TGTACA	1 cut(s)	361
Bsp143I	GATC	2 cut(s)	25, 709
Bsp19I	CCATGG	3 cut(s)	123, 428, 745
BspACI	CCGC	4 cut(s)	265, 294, 493, 665
BspANI	GGCC	3 cut(s)	81, 492, 1106
BspCNI	CTCAG	2 cut(s)	1009, 1010
BspEI	TCCGGA	2 cut(s)	150, 317
BspHI	TCATGA	1 cut(s)	813
BspLI	GGNNCC	1 cut(s)	463
BspT107I	GGYRCC	1 cut(s)	461
BsrFI	RCCGGY	1 cut(s)	736
BsrGI	TGTACA	1 cut(s)	361
BsrI	ACTGG	3 cut(s)	633, 655, 839
BssAI	RCCGGY	1 cut(s)	736
BssECI	CCNNGG	3 cut(s)	123, 428, 745
BssMI	GATC	2 cut(s)	25, 709
BssNI	GRCGYC	1 cut(s)	462
BssT1I	CCWWGG	3 cut(s)	123, 428, 745
Bst4CI	ACNGT	3 cut(s)	14, 308, 872
BstACI	GRCGYC	1 cut(s)	462
BstAPI	GCANNNNNTGC	1 cut(s)	558
BstAUI	TGTACA	1 cut(s)	361
BstC8I	GCNNGC	2 cut(s)	208, 1051
BstDEI	CTNAG	4 cut(s)	74, 567, 997, 1017
BstDSI	CCRYGG	3 cut(s)	123, 428, 745
BstF5I	GGATG	3 cut(s)	67, 298, 640
BstH2I	RGCGCY	1 cut(s)	465
BstHHI	GCGC	3 cut(s)	464, 473, 659
BstKTI	GATC	2 cut(s)	28, 712
BstMAI	GTCTC	1 cut(s)	398
BstMBI	GATC	2 cut(s)	25, 709
BstMWI	GCNNNNNNNGC	5 cut(s)	255, 468, 470, 558, 696
BstNSI	RCATGY	7 cut(s)	106, 249, 556, 722, 761, 775, 949
Bsu36I	CCTNAGG	1 cut(s)	997
BsuI	GTATCC	2 cut(s)	147, 693
BsuRI	GGCC	3 cut(s)	81, 492, 1106
BtgI	CCRYGG	3 cut(s)	123, 428, 745
BtsCI	GGATG	3 cut(s)	67, 298, 640
BtsI	GCAGTG	1 cut(s)	666
BtsIMutI	CAGTG	3 cut(s)	10, 626, 666
Cac8I	GCNNGC	2 cut(s)	208, 1051
CciI	TCATGA	1 cut(s)	813
CfoI	GCGC	3 cut(s)	464, 473, 659
Cfr10I	RCCGGY	1 cut(s)	736
Csp6I	GTAC	4 cut(s)	100, 362, 564, 742
CspAI	ACCGGT	1 cut(s)	736
CspCI	CAANNNNNGTGG	2 cut(s)	612, 647
CviQI	GTAC	4 cut(s)	100, 362, 564, 742
DdeI	CTNAG	4 cut(s)	74, 567, 997, 1017
DinI	GGCGCC	1 cut(s)	463
DpnI	GATC	2 cut(s)	27, 711
DpnII	GATC	2 cut(s)	25, 709
DraI	TTTAAA	1 cut(s)	132
DrdI	GACNNNNNNGTC	1 cut(s)	346
DseDI	GACNNNNNNGTC	1 cut(s)	346
EaeI	YGGCCR	1 cut(s)	490
Ecl136II	GAGCTC	1 cut(s)	148
Eco130I	CCWWGG	3 cut(s)	123, 428, 745
Eco147I	AGGCCT	1 cut(s)	1106
Eco24I	GRGCYC	1 cut(s)	150
Eco32I	GATATC	1 cut(s)	163
Eco53kI	GAGCTC	1 cut(s)	148
Eco81I	CCTNAGG	1 cut(s)	997
Eco88I	CYCGRG	1 cut(s)	524
EcoICRI	GAGCTC	1 cut(s)	148
EcoRV	GATATC	1 cut(s)	163
EcoT14I	CCWWGG	3 cut(s)	123, 428, 745
EcoT22I	ATGCAT	1 cut(s)	187
EcoT38I	GRGCYC	1 cut(s)	150
EgeI	GGCGCC	1 cut(s)	463
EheI	GGCGCC	1 cut(s)	463
ErhI	CCWWGG	3 cut(s)	123, 428, 745
FaqI	GGGAC	1 cut(s)	661
Fnu4HI	GCNGC	1 cut(s)	493
FokI	GGATG	3 cut(s)	74, 285, 647
FriOI	GRGCYC	1 cut(s)	150
Fsp4HI	GCNGC	1 cut(s)	493
FspBI	CTAG	3 cut(s)	351, 383, 926
GlaI	GCGC	3 cut(s)	463, 472, 658
GluI	GCNGC	1 cut(s)	493
GsaI	CCCAGC	1 cut(s)	690
GsuI	CTGGAG	3 cut(s)	219, 422, 856
HaeII	RGCGCY	1 cut(s)	465
HaeIII	GGCC	3 cut(s)	81, 492, 1106
HapII	CCGG	4 cut(s)	151, 318, 737, 887
HhaI	GCGC	3 cut(s)	464, 473, 659
Hin1I	GRCGYC	1 cut(s)	462
Hin6I	GCGC	3 cut(s)	462, 471, 657
HinP1I	GCGC	3 cut(s)	462, 471, 657
HincII	GTYRAC	1 cut(s)	339
HindII	GTYRAC	1 cut(s)	339
HinfI	GANTC	4 cut(s)	119, 314, 340, 368
HpaII	CCGG	4 cut(s)	151, 318, 737, 887
HphI	GGTGA	5 cut(s)	219, 283, 779, 916, 950
Hpy166II	GTNNAC	4 cut(s)	339, 378, 742, 916
Hpy188I	TCNGA	4 cut(s)	199, 373, 390, 517
Hpy188III	TCNNGA	9 cut(s)	151, 236, 302, 318, 351, 401, 814, 856, 926
Hpy8I	GTNNAC	4 cut(s)	339, 378, 742, 916
Hpy99I	CGWCG	1 cut(s)	956
HpyAV	CCTTC	2 cut(s)	223, 1117
HpyCH4III	ACNGT	3 cut(s)	14, 308, 872
HpyCH4IV	ACGT	1 cut(s)	918
HpyCH4V	TGCA	7 cut(s)	116, 185, 224, 561, 728, 829, 989
HpyF10VI	GCNNNNNNNGC	5 cut(s)	255, 468, 470, 558, 696
HpyF3I	CTNAG	4 cut(s)	74, 567, 997, 1017
HpySE526I	ACGT	1 cut(s)	918
Hsp92I	GRCGYC	1 cut(s)	462
HspAI	GCGC	3 cut(s)	462, 471, 657
KasI	GGCGCC	1 cut(s)	461
Kpn2I	TCCGGA	2 cut(s)	150, 317
Kzo9I	GATC	2 cut(s)	25, 709
LmnI	GCTCC	5 cut(s)	145, 153, 215, 391, 837
LweI	GCATC	5 cut(s)	77, 233, 267, 708, 793
MaeI	CTAG	3 cut(s)	351, 383, 926
MaeII	ACGT	1 cut(s)	918
MaeIII	GTNAC	5 cut(s)	49, 589, 753, 767, 1061
MalI	GATC	2 cut(s)	27, 711
MboI	GATC	2 cut(s)	25, 709
MboII	GAAGA	4 cut(s)	280, 389, 1042, 1045
MhlI	GDGCHC	1 cut(s)	150
MluCI	AATT	2 cut(s)	56, 1077
Mly113I	GGCGCC	1 cut(s)	462
MlyI	GAGTC	2 cut(s)	334, 362
MmeI	TCCRAC	1 cut(s)	742
Mph1103I	ATGCAT	1 cut(s)	187
MroI	TCCGGA	2 cut(s)	150, 317
MroXI	GAANNNNTTC	1 cut(s)	287
MseI	TTAA	3 cut(s)	36, 131, 693
MslI	CAYNNNNRTG	2 cut(s)	174, 180
MspI	CCGG	4 cut(s)	151, 318, 737, 887
MwoI	GCNNNNNNNGC	5 cut(s)	255, 468, 470, 558, 696
NarI	GGCGCC	1 cut(s)	462
NcoI	CCATGG	3 cut(s)	123, 428, 745
NdeII	GATC	2 cut(s)	25, 709
NlaIV	GGNNCC	1 cut(s)	463
NmeAIII	GCCGAG	1 cut(s)	87
NmuCI	GTSAC	3 cut(s)	589, 753, 767
NsiI	ATGCAT	1 cut(s)	187
NspI	RCATGY	7 cut(s)	106, 249, 556, 722, 761, 775, 949
PagI	TCATGA	1 cut(s)	813
PceI	AGGCCT	1 cut(s)	1106
PciI	ACATGT	3 cut(s)	718, 757, 771
PcsI	WCGNNNNNNNCGW	1 cut(s)	837
PdmI	GAANNNNTTC	1 cut(s)	287
PfeI	GAWTC	2 cut(s)	119, 314
PflFI	GACNNNGTC	1 cut(s)	193
PinAI	ACCGGT	1 cut(s)	736
PkrI	GCNGC	1 cut(s)	494
PleI	GAGTC	2 cut(s)	334, 362
PluTI	GGCGCC	1 cut(s)	465
PpsI	GAGTC	2 cut(s)	334, 362
PscI	ACATGT	3 cut(s)	718, 757, 771
Psp124BI	GAGCTC	1 cut(s)	150
PspFI	CCCAGC	1 cut(s)	686
PspN4I	GGNNCC	1 cut(s)	463
PsyI	GACNNNGTC	1 cut(s)	193
RsaI	GTAC	4 cut(s)	101, 363, 565, 743
RsaNI	GTAC	4 cut(s)	100, 362, 564, 742
RseI	CAYNNNNRTG	2 cut(s)	174, 180
SacI	GAGCTC	1 cut(s)	150
SaqAI	TTAA	3 cut(s)	36, 131, 693
SatI	GCNGC	1 cut(s)	493
Sau3AI	GATC	2 cut(s)	25, 709
ScaI	AGTACT	1 cut(s)	565
SchI	GAGTC	2 cut(s)	334, 362
SduI	GDGCHC	1 cut(s)	150
SetI	ASST	8 cut(s)	150, 388, 769, 906, 921, 998, 1003, 1087
SfaNI	GCATC	5 cut(s)	77, 233, 267, 708, 793
SfoI	GGCGCC	1 cut(s)	463
SgrAI	CRCCGGYG	1 cut(s)	736
SmiMI	CAYNNNNRTG	2 cut(s)	174, 180
Sse9I	AATT	2 cut(s)	56, 1077
SseBI	AGGCCT	1 cut(s)	1106
SsiI	CCGC	4 cut(s)	265, 294, 493, 665
SspDI	GGCGCC	1 cut(s)	461
SspI	AATATT	2 cut(s)	437, 790
SspMI	CTAG	3 cut(s)	351, 383, 926
SstI	GAGCTC	1 cut(s)	150
StuI	AGGCCT	1 cut(s)	1106
StyI	CCWWGG	3 cut(s)	123, 428, 745
TaaI	ACNGT	3 cut(s)	14, 308, 872
TaiI	ACGT	1 cut(s)	921
TaqI	TCGA	3 cut(s)	28, 874, 951
TasI	AATT	2 cut(s)	56, 1077
TatI	WGTACW	3 cut(s)	99, 361, 563
TauI	GCSGC	1 cut(s)	495
TfiI	GAWTC	2 cut(s)	119, 314
Tru1I	TTAA	3 cut(s)	36, 131, 693
Tru9I	TTAA	3 cut(s)	36, 131, 693
TscAI	CASTG	3 cut(s)	17, 633, 666
TseFI	GTSAC	3 cut(s)	589, 753, 767
Tsp45I	GTSAC	3 cut(s)	589, 753, 767
TspDTI	ATGAA	4 cut(s)	78, 593, 802, 830
TspRI	CASTG	3 cut(s)	17, 633, 666
Tth111I	GACNNNGTC	1 cut(s)	193
XapI	RAATTY	1 cut(s)	1077
XbaI	TCTAGA	2 cut(s)	350, 925
XceI	RCATGY	7 cut(s)	106, 249, 556, 722, 761, 775, 949
XmnI	GAANNNNTTC	1 cut(s)	287
XspI	CTAG	3 cut(s)	351, 383, 926
ZrmI	AGTACT	1 cut(s)	565
Zsp2I	ATGCAT	1 cut(s)	187

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.