Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0001688

Physical Location & Seq

Genomic Coordinates Reverse (-)

45520115 .. 45521316

Gene Structure 1202 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG281400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1080 bp

ATGGAAGCAGTTACAGAATTGGATGAAGCAACTCTAAGAGGCCAAGCAGACGTATGGAAGTACATGCTCGGCTTTGCAGATTCCATGGCTTTGAAATGTGCTGTGGAGCTCCGGATACCAGATATTATACACACTCATGGTCATGCATTGACCTTGTCTGAAATAACCTCGTCCCTCGACTCTGCATCACCCTCTCCAGACATCACATGCCTCTCTCGCATCATGCGGTTGCTGGTTCGCAGGAACATTTTCACCGCACATCATGACTGTGGAGATTCTGGAGAAACCCTCTACGGCTTGACTCACTCGTCTAGATGGCTCTTACATGATTCGGAGCTCACTCTAACTCCGATGGTTCTCATGGAGACAAATCCTACTCTAATGGCGCCATGGCACTGTTTCAGCCAATGCGTCAAGCAAGGCGCCCCATGCGCCTTTGAAAAAGTGCATGGCCGCAATATTTGGCAATTCTTCTCCGAAAAACCAGAGTTCAACCAATTGTTCAACGATGGCATGTCGTGCACTACTAAGATTACAATGAAAGCGATACTCACGGGATATAAGGGTGGGTTTGAAGATGTGGCAACATTGGTGGATGTTGGTGGTGGGACTGGAAGCGCAGTGGCGGAGATTGTGAAGTTGTATCCCAGCATTAGGGGCATCAACTTTGATCTACCACATGTAGTTGCAACAGCGCCAGTGTACCATGGGGTGTCACATGTTGGAGGTGACATGTTTGATGAGGGCAATATTCCAAACACTGATGCAATTTTCATGAAGTGGATTATGCACGACTGGAGCGACAGCGATTGTGTCAAGATATTGAAAAACTGTCGAAAGGCGATACCGGAAAGAAGTGGCAAGGTGATTATTGTGGACGTTGTTCTAGAGCCAAATGGTGATGGCATGTTCGACGACACAGGCTTGGTGTTTGATTTGCTAATGATTGCACACACCTCAGGTGGAAAGGAGAGGACTGAGAGTGAATGGAAGAAGATTTTGGAACAAGCAGGCTTCCCTCGTTACAAAATCATCAAAATTCCAGCTTTATTGTCCATTATTGAGGCCTTCCCTGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dimerisation Methyltransf_2

Protein Analysis

359

Amino Acids

39.72

Weight (kDa)

5.5

Isoelectric Point (pI)

40.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dimerisation	PF08100	19 - 109	1.8e-20	O-methyltransferase dimerisation domain
Methyltransf_2	PF00891	131 - 339	1.8e-62	O-methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001688)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g17220 FvH4_6g45070
malus_domestica	MD09G1089200.v1.1 MD09G1089800.v1.1 MD09G1090100.v1.1 MD09G1090200.v1.1 MD17G1079200.v1.1
prunus_persica	Prupe.3G235300_v2.0.a1 Prupe.3G235500_v2.0.a1
pyrus_communis	pycom09g01490 pycom17g07830
rosa_chinensis	RchiOBHm_Chr1g0324661 RchiOBHm_Chr2g0139131 RchiOBHm_Chr4g0427641 RchiOBHm_Chr4g0427651
rosa_laevigata	RLG00000007219 RLG00000007220 RLG00000019790 RLG00000021346 RLG00000021347
rosa_multiflora	Rmu_co8132516.1_g000001 Rmu_sc0001803.1_g000030 Rmu_sc0003399.1_g000006 Rmu_sc0009627.1_g000012 Rmu_sc0009627.1_g000013
rosa_roxburghii	Rroxscaffold_2G00105640 Rroxscaffold_5G00369270 Rroxscaffold_5G00369300
rosa_rugosa	Rorug02G0354700 Rorug02G0498000 Rorug04G0219000
rosa_samantha	Rh1CG065100 Rh1DG069400 Rh1DG070200 Rh2AG405100 Rh2BG415000 Rh2CG391300 Rh2DG424900 Rh4AG275500 Rh4BG281400 Rh4BG281500 Rh4CG296800 Rh4CG296900 Rh4DG278800 Rh4DG278900
rosa_wichuraiana	Rw1G005480 Rw2G033080 Rw4G023890 Rw4G023900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	307
AccB1I	GGYRCC	2 cut(s)	385, 422
AccIII	TCCGGA	1 cut(s)	111
AciI	CCGC	4 cut(s)	226, 255, 454, 626
AcoI	YGGCCR	1 cut(s)	451
AcsI	RAATTY	1 cut(s)	1038
AcyI	GRCGYC	2 cut(s)	386, 423
AfaI	GTAC	2 cut(s)	62, 704
AfiI	CCNNNNNNNGG	1 cut(s)	654
AflIII	ACRYGT	3 cut(s)	679, 718, 732
AgsI	TTSAA	6 cut(s)	94, 440, 493, 505, 575, 826
AjuI	GAANNNNNNNTTGG	2 cut(s)	983, 1015
AluBI	AGCT	3 cut(s)	109, 337, 1046
AluI	AGCT	3 cut(s)	109, 337, 1046
Alw21I	GWGCWC	3 cut(s)	111, 339, 524
Alw26I	GTCTC	1 cut(s)	359
Alw44I	GTGCAC	1 cut(s)	520
Aor13HI	TCCGGA	1 cut(s)	111
AoxI	GGCC	3 cut(s)	40, 451, 1065
ApaLI	GTGCAC	1 cut(s)	520
ApoI	RAATTY	1 cut(s)	1038
Asp700I	GAANNNNTTC	1 cut(s)	248
AspLEI	GCGC	5 cut(s)	388, 425, 434, 620, 697
AsuHPI	GGTGA	5 cut(s)	180, 244, 740, 877, 911
AxyI	CCTNAGG	1 cut(s)	958
BaeGI	GKGCMC	1 cut(s)	524
BanI	GGYRCC	2 cut(s)	385, 422
BanII	GRGCYC	2 cut(s)	111, 339
Bbv12I	GWGCWC	3 cut(s)	111, 339, 524
BccI	CCATC	4 cut(s)	309, 346, 503, 896
BceAI	ACGGC	1 cut(s)	310
BciVI	GTATCC	2 cut(s)	108, 654
BcoDI	GTCTC	1 cut(s)	359
BfaI	CTAG	2 cut(s)	312, 887
BfoI	RGCGCY	3 cut(s)	389, 426, 698
BfuI	GTATCC	2 cut(s)	108, 654
BisI	GCNGC	1 cut(s)	454
BlsI	GCNGC	1 cut(s)	455
BmiI	GGNNCC	2 cut(s)	387, 424
BmsI	GCATC	4 cut(s)	194, 228, 669, 754
BplI	GAGNNNNNCTC	2 cut(s)	273, 305
BpmI	CTGGAG	3 cut(s)	180, 300, 817
BsaHI	GRCGYC	2 cut(s)	386, 423
BsaJI	CCNNGG	3 cut(s)	84, 389, 706
BsaWI	WCCGGW	2 cut(s)	111, 847
BsaXI	ACNNNNNCTCC	2 cut(s)	331, 361
Bsc4I	CCNNNNNNNGG	1 cut(s)	654
Bse1I	ACTGG	3 cut(s)	616, 698, 800
Bse21I	CCTNAGG	1 cut(s)	958
BseAI	TCCGGA	1 cut(s)	111
BseDI	CCNNGG	3 cut(s)	84, 389, 706
BseGI	GGATG	2 cut(s)	28, 601
BseLI	CCNNNNNNNGG	1 cut(s)	654
BseMII	CTCAG	2 cut(s)	969, 972
BseNI	ACTGG	3 cut(s)	616, 698, 800
BseSI	GKGCMC	1 cut(s)	524
BseYI	CCCAGC	1 cut(s)	647
BshFI	GGCC	3 cut(s)	42, 453, 1067
BshNI	GGYRCC	2 cut(s)	385, 422
BsiHKAI	GWGCWC	3 cut(s)	111, 339, 524
BsiSI	CCGG	2 cut(s)	112, 848
BslFI	GGGAC	2 cut(s)	157, 622
BslI	CCNNNNNNNGG	1 cut(s)	654
BsmAI	GTCTC	1 cut(s)	359
BsmFI	GGGAC	2 cut(s)	157, 622
BsnI	GGCC	3 cut(s)	42, 453, 1067
Bsp1286I	GDGCHC	3 cut(s)	111, 339, 524
Bsp13I	TCCGGA	1 cut(s)	111
Bsp143I	GATC	1 cut(s)	670
Bsp19I	CCATGG	3 cut(s)	84, 389, 706
BspACI	CCGC	4 cut(s)	226, 255, 454, 626
BspANI	GGCC	3 cut(s)	42, 453, 1067
BspCNI	CTCAG	2 cut(s)	970, 971
BspEI	TCCGGA	1 cut(s)	111
BspHI	TCATGA	2 cut(s)	262, 774
BspLI	GGNNCC	2 cut(s)	387, 424
BspT107I	GGYRCC	2 cut(s)	385, 422
BsrI	ACTGG	3 cut(s)	616, 698, 800
BssECI	CCNNGG	3 cut(s)	84, 389, 706
BssMI	GATC	1 cut(s)	670
BssNI	GRCGYC	2 cut(s)	386, 423
BssT1I	CCWWGG	3 cut(s)	84, 389, 706
Bst4CI	ACNGT	3 cut(s)	269, 398, 833
BstACI	GRCGYC	2 cut(s)	386, 423
BstAPI	GCANNNNNTGC	1 cut(s)	519
BstC8I	GCNNGC	1 cut(s)	1012
BstDEI	CTNAG	4 cut(s)	35, 528, 958, 978
BstDSI	CCRYGG	3 cut(s)	84, 389, 706
BstF5I	GGATG	2 cut(s)	28, 601
BstH2I	RGCGCY	3 cut(s)	389, 426, 698
BstHHI	GCGC	5 cut(s)	388, 425, 434, 620, 697
BstKTI	GATC	1 cut(s)	673
BstMAI	GTCTC	1 cut(s)	359
BstMBI	GATC	1 cut(s)	670
BstMWI	GCNNNNNNNGC	5 cut(s)	216, 429, 431, 519, 657
BstNSI	RCATGY	7 cut(s)	67, 210, 517, 683, 722, 736, 910
BstSLI	GKGCMC	1 cut(s)	524
Bsu36I	CCTNAGG	1 cut(s)	958
BsuI	GTATCC	2 cut(s)	108, 654
BsuRI	GGCC	3 cut(s)	42, 453, 1067
BtgI	CCRYGG	3 cut(s)	84, 389, 706
BtsCI	GGATG	2 cut(s)	28, 601
BtsI	GCAGTG	1 cut(s)	627
BtsIMutI	CAGTG	4 cut(s)	394, 627, 705, 759
Cac8I	GCNNGC	1 cut(s)	1012
CciI	TCATGA	2 cut(s)	262, 774
CfoI	GCGC	5 cut(s)	388, 425, 434, 620, 697
CseI	GACGC	1 cut(s)	400
Csp6I	GTAC	2 cut(s)	61, 703
CspCI	CAANNNNNGTGG	2 cut(s)	573, 608
CviQI	GTAC	2 cut(s)	61, 703
DdeI	CTNAG	4 cut(s)	35, 528, 958, 978
DinI	GGCGCC	2 cut(s)	387, 424
DpnI	GATC	1 cut(s)	672
DpnII	GATC	1 cut(s)	670
DrdI	GACNNNNNNGTC	1 cut(s)	307
DseDI	GACNNNNNNGTC	1 cut(s)	307
EaeI	YGGCCR	1 cut(s)	451
EciI	GGCGGA	1 cut(s)	641
Ecl136II	GAGCTC	2 cut(s)	109, 337
Eco130I	CCWWGG	3 cut(s)	84, 389, 706
Eco147I	AGGCCT	1 cut(s)	1067
Eco24I	GRGCYC	2 cut(s)	111, 339
Eco53kI	GAGCTC	2 cut(s)	109, 337
Eco81I	CCTNAGG	1 cut(s)	958
EcoICRI	GAGCTC	2 cut(s)	109, 337
EcoT14I	CCWWGG	3 cut(s)	84, 389, 706
EcoT22I	ATGCAT	1 cut(s)	148
EcoT38I	GRGCYC	2 cut(s)	111, 339
EgeI	GGCGCC	2 cut(s)	387, 424
EheI	GGCGCC	2 cut(s)	387, 424
ErhI	CCWWGG	3 cut(s)	84, 389, 706
FaqI	GGGAC	2 cut(s)	157, 622
Fnu4HI	GCNGC	1 cut(s)	454
FokI	GGATG	2 cut(s)	35, 608
FriOI	GRGCYC	2 cut(s)	111, 339
Fsp4HI	GCNGC	1 cut(s)	454
FspBI	CTAG	2 cut(s)	312, 887
GlaI	GCGC	5 cut(s)	387, 424, 433, 619, 696
GluI	GCNGC	1 cut(s)	454
GsaI	CCCAGC	1 cut(s)	651
GsuI	CTGGAG	3 cut(s)	180, 300, 817
HaeII	RGCGCY	3 cut(s)	389, 426, 698
HaeIII	GGCC	3 cut(s)	42, 453, 1067
HapII	CCGG	2 cut(s)	112, 848
HgaI	GACGC	1 cut(s)	400
HhaI	GCGC	5 cut(s)	388, 425, 434, 620, 697
Hin1I	GRCGYC	2 cut(s)	386, 423
Hin6I	GCGC	5 cut(s)	386, 423, 432, 618, 695
HinP1I	GCGC	5 cut(s)	386, 423, 432, 618, 695
HinfI	GANTC	5 cut(s)	80, 179, 275, 301, 329
HpaII	CCGG	2 cut(s)	112, 848
HphI	GGTGA	5 cut(s)	180, 244, 740, 877, 911
Hpy166II	GTNNAC	3 cut(s)	522, 703, 877
Hpy188I	TCNGA	4 cut(s)	160, 334, 351, 478
Hpy188III	TCNNGA	8 cut(s)	112, 197, 263, 279, 312, 775, 817, 887
Hpy8I	GTNNAC	3 cut(s)	522, 703, 877
Hpy99I	CGWCG	1 cut(s)	917
HpyAV	CCTTC	1 cut(s)	1078
HpyCH4III	ACNGT	3 cut(s)	269, 398, 833
HpyCH4IV	ACGT	2 cut(s)	51, 879
HpyCH4V	TGCA	9 cut(s)	77, 146, 185, 448, 522, 689, 767, 790, 950
HpyF10VI	GCNNNNNNNGC	5 cut(s)	216, 429, 431, 519, 657
HpyF3I	CTNAG	4 cut(s)	35, 528, 958, 978
HpySE526I	ACGT	2 cut(s)	51, 879
Hsp92I	GRCGYC	2 cut(s)	386, 423
HspAI	GCGC	5 cut(s)	386, 423, 432, 618, 695
KasI	GGCGCC	2 cut(s)	385, 422
Kpn2I	TCCGGA	1 cut(s)	111
Kzo9I	GATC	1 cut(s)	670
LmnI	GCTCC	4 cut(s)	106, 114, 334, 798
LweI	GCATC	4 cut(s)	194, 228, 669, 754
MaeI	CTAG	2 cut(s)	312, 887
MaeII	ACGT	2 cut(s)	51, 879
MaeIII	GTNAC	4 cut(s)	10, 714, 728, 1022
MalI	GATC	1 cut(s)	672
MboI	GATC	1 cut(s)	670
MboII	GAAGA	4 cut(s)	463, 587, 1003, 1006
MfeI	CAATTG	1 cut(s)	497
MhlI	GDGCHC	3 cut(s)	111, 339, 524
MluCI	AATT	5 cut(s)	17, 467, 497, 768, 1038
Mly113I	GGCGCC	2 cut(s)	386, 423
MlyI	GAGTC	2 cut(s)	173, 295
MmeI	TCCRAC	1 cut(s)	703
Mph1103I	ATGCAT	1 cut(s)	148
MroI	TCCGGA	1 cut(s)	111
MroXI	GAANNNNTTC	1 cut(s)	248
MslI	CAYNNNNRTG	3 cut(s)	135, 141, 267
MspI	CCGG	2 cut(s)	112, 848
MunI	CAATTG	1 cut(s)	497
MwoI	GCNNNNNNNGC	5 cut(s)	216, 429, 431, 519, 657
NarI	GGCGCC	2 cut(s)	386, 423
NcoI	CCATGG	3 cut(s)	84, 389, 706
NdeII	GATC	1 cut(s)	670
NlaIV	GGNNCC	2 cut(s)	387, 424
NmeAIII	GCCGAG	1 cut(s)	48
NmuCI	GTSAC	2 cut(s)	714, 728
NsiI	ATGCAT	1 cut(s)	148
NspI	RCATGY	7 cut(s)	67, 210, 517, 683, 722, 736, 910
PagI	TCATGA	2 cut(s)	262, 774
PceI	AGGCCT	1 cut(s)	1067
PciI	ACATGT	3 cut(s)	679, 718, 732
PcsI	WCGNNNNNNNCGW	1 cut(s)	798
PdmI	GAANNNNTTC	1 cut(s)	248
PfeI	GAWTC	3 cut(s)	80, 275, 329
PflFI	GACNNNGTC	1 cut(s)	154
PkrI	GCNGC	1 cut(s)	455
PleI	GAGTC	2 cut(s)	173, 295
PluTI	GGCGCC	2 cut(s)	389, 426
PpsI	GAGTC	2 cut(s)	173, 295
PscI	ACATGT	3 cut(s)	679, 718, 732
Psp124BI	GAGCTC	2 cut(s)	111, 339
PspFI	CCCAGC	1 cut(s)	647
PspN4I	GGNNCC	2 cut(s)	387, 424
PsyI	GACNNNGTC	1 cut(s)	154
RsaI	GTAC	2 cut(s)	62, 704
RsaNI	GTAC	2 cut(s)	61, 703
RseI	CAYNNNNRTG	3 cut(s)	135, 141, 267
SacI	GAGCTC	2 cut(s)	111, 339
SatI	GCNGC	1 cut(s)	454
Sau3AI	GATC	1 cut(s)	670
SchI	GAGTC	2 cut(s)	173, 295
SduI	GDGCHC	3 cut(s)	111, 339, 524
SfaNI	GCATC	4 cut(s)	194, 228, 669, 754
SfoI	GGCGCC	2 cut(s)	387, 424
SmiMI	CAYNNNNRTG	3 cut(s)	135, 141, 267
Sse9I	AATT	5 cut(s)	17, 467, 497, 768, 1038
SseBI	AGGCCT	1 cut(s)	1067
SsiI	CCGC	4 cut(s)	226, 255, 454, 626
SspDI	GGCGCC	2 cut(s)	385, 422
SspI	AATATT	2 cut(s)	460, 751
SspMI	CTAG	2 cut(s)	312, 887
SstI	GAGCTC	2 cut(s)	111, 339
StuI	AGGCCT	1 cut(s)	1067
StyI	CCWWGG	3 cut(s)	84, 389, 706
TaaI	ACNGT	3 cut(s)	269, 398, 833
TaiI	ACGT	2 cut(s)	54, 882
TaqI	TCGA	3 cut(s)	177, 835, 912
TasI	AATT	5 cut(s)	17, 467, 497, 768, 1038
TatI	WGTACW	1 cut(s)	60
TauI	GCSGC	1 cut(s)	456
TfiI	GAWTC	3 cut(s)	80, 275, 329
TscAI	CASTG	4 cut(s)	401, 627, 705, 766
TseFI	GTSAC	2 cut(s)	714, 728
Tsp45I	GTSAC	2 cut(s)	714, 728
TspDTI	ATGAA	4 cut(s)	39, 554, 763, 791
TspRI	CASTG	4 cut(s)	401, 627, 705, 766
Tth111I	GACNNNGTC	1 cut(s)	154
VneI	GTGCAC	1 cut(s)	520
XapI	RAATTY	1 cut(s)	1038
XbaI	TCTAGA	2 cut(s)	311, 886
XceI	RCATGY	7 cut(s)	67, 210, 517, 683, 722, 736, 910
XmnI	GAANNNNTTC	1 cut(s)	248
XspI	CTAG	2 cut(s)	312, 887
Zsp2I	ATGCAT	1 cut(s)	148

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.