Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0001688

Physical Location & Seq

Genomic Coordinates Reverse (-)

45524014 .. 45525690

Gene Structure 1677 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG281500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1080 bp

ATGGAAGCAGTTACAGAATTGGATGAAGCATCTCTAAGAGGCCAAGCAGATGTATGGAAGTACATGCTCGGCTTTGCAGATTCCATGGCTTTAAAATCTGCTGTGGAGCTCCGGATACCAGATATCATACACTCTCATGGTCATGCATTGACTTTGTCTGAAATAGCCTGCTCCTTCAACTCTGCATCACCCTCTCCAGACATCACATGCCTCTCTCGCATCATGCGGTTGCTGGTTCGCAGGAACATCTTCACCGCACATCCTGACGGTGGAGATTCCGGAGAAACCCTCTACGGGTTGACTCACTCGTCTAGATGGCTTGTACATGACTCGGAGTTCACTCTAGCTCCGATGGTTCTTCTGGAGACAAATCCTACTCTAATAGAGCCATGGCAATATTTCAGCCAATGTGTCAAGCAAGGCGCCCCATGCGCCTTTGAGAAAGCACATGGCCGCAACATTTGGCAATACTCCTCTGAAAAACCCGAGTTCAACCGATTGTTCAACGATGGCATGTCGTGCAGTACTAAGATTACAATGAAAGCAATAGTCACAGGATATAAGGGTGGGTTTGATGACTTGGCAACACTGGTGGATGTTGGTGGTGGGACTGGAAGCGCAGTGGCGGAGATTGTGAAGTTGTATCCCAGCATTAAGGGCATCAACTTTGATCTGCCACATGTAGTTGCAACAGCACCGGTGTACCATGGGGTGTCACATGTTGGAGGTGACATGTTTGATGAGGGCAATATTCCAAACACCGATGCTATTTTCATGAAGTGGATTATGCACGACTGGAGCGACAACGATTGCGTCAAGATATTGAAAAACTGTCGAAAGGCGATACCGGAGAGAAGTGGCAAGGTGATTATTGTGGACGTTGTTCTAGAGCCAAATGGTGATGGCATGTTCGACGACACAGGCTTGGTGTTTGATTTGCTAATGATTGCACACGCCTCAGGTGGAAAGGAGAGGACTGAGAGTGAATGGAAGAAGGTGTTGGAACAAGCAGGCTTCCCTCGTTACAAAATCATCAAAATTCCAGCTTTATCGTCCATTATTGAGGCCTACCCTGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dimerisation Methyltransf_2

Protein Analysis

359

Amino Acids

39.54

Weight (kDa)

5.46

Isoelectric Point (pI)

39.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dimerisation	PF08100	19 - 109	1.3e-19	O-methyltransferase dimerisation domain
Methyltransf_2	PF00891	131 - 339	2.1e-63	O-methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001688)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g17220 FvH4_6g45070
malus_domestica	MD09G1089200.v1.1 MD09G1089800.v1.1 MD09G1090100.v1.1 MD09G1090200.v1.1 MD17G1079200.v1.1
prunus_persica	Prupe.3G235300_v2.0.a1 Prupe.3G235500_v2.0.a1
pyrus_communis	pycom09g01490 pycom17g07830
rosa_chinensis	RchiOBHm_Chr1g0324661 RchiOBHm_Chr2g0139131 RchiOBHm_Chr4g0427641 RchiOBHm_Chr4g0427651
rosa_laevigata	RLG00000007219 RLG00000007220 RLG00000019790 RLG00000021346 RLG00000021347
rosa_multiflora	Rmu_co8132516.1_g000001 Rmu_sc0001803.1_g000030 Rmu_sc0003399.1_g000006 Rmu_sc0009627.1_g000012 Rmu_sc0009627.1_g000013
rosa_roxburghii	Rroxscaffold_2G00105640 Rroxscaffold_5G00369270 Rroxscaffold_5G00369300
rosa_rugosa	Rorug02G0354700 Rorug02G0498000 Rorug04G0219000
rosa_samantha	Rh1CG065100 Rh1DG069400 Rh1DG070200 Rh2AG405100 Rh2BG415000 Rh2CG391300 Rh2DG424900 Rh4AG275500 Rh4BG281400 Rh4BG281500 Rh4CG296800 Rh4CG296900 Rh4DG278800 Rh4DG278900
rosa_wichuraiana	Rw1G005480 Rw2G033080 Rw4G023890 Rw4G023900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	307
AccB1I	GGYRCC	1 cut(s)	422
AccIII	TCCGGA	2 cut(s)	111, 278
AciI	CCGC	4 cut(s)	226, 255, 454, 626
AcoI	YGGCCR	1 cut(s)	451
AcsI	RAATTY	1 cut(s)	1038
AcyI	GRCGYC	1 cut(s)	423
AfaI	GTAC	4 cut(s)	62, 324, 526, 704
AfiI	CCNNNNNNNGG	2 cut(s)	269, 294
AflIII	ACRYGT	3 cut(s)	679, 718, 732
AgeI	ACCGGT	1 cut(s)	697
AgsI	TTSAA	4 cut(s)	178, 493, 505, 826
AjuI	GAANNNNNNNTTGG	2 cut(s)	983, 1015
AluBI	AGCT	3 cut(s)	109, 347, 1046
AluI	AGCT	3 cut(s)	109, 347, 1046
Alw21I	GWGCWC	1 cut(s)	111
Alw26I	GTCTC	1 cut(s)	359
Ama87I	CYCGRG	1 cut(s)	485
Aor13HI	TCCGGA	2 cut(s)	111, 278
AoxI	GGCC	3 cut(s)	40, 451, 1065
ApoI	RAATTY	1 cut(s)	1038
AsiGI	ACCGGT	1 cut(s)	697
Asp700I	GAANNNNTTC	1 cut(s)	248
AspLEI	GCGC	3 cut(s)	425, 434, 620
AsuHPI	GGTGA	5 cut(s)	180, 244, 740, 877, 911
AvaI	CYCGRG	1 cut(s)	485
AxyI	CCTNAGG	1 cut(s)	958
BaeI	ACNNNNGTAYC	2 cut(s)	686, 719
BanI	GGYRCC	1 cut(s)	422
BanII	GRGCYC	1 cut(s)	111
Bbv12I	GWGCWC	1 cut(s)	111
BccI	CCATC	4 cut(s)	309, 346, 503, 896
BciVI	GTATCC	2 cut(s)	108, 654
BcoDI	GTCTC	1 cut(s)	359
BfaI	CTAG	3 cut(s)	312, 344, 887
BfoI	RGCGCY	1 cut(s)	426
BfuI	GTATCC	2 cut(s)	108, 654
BisI	GCNGC	1 cut(s)	454
BlsI	GCNGC	1 cut(s)	455
BmcAI	AGTACT	1 cut(s)	526
BmeT110I	CYCGRG	1 cut(s)	485
BmiI	GGNNCC	1 cut(s)	424
BmsI	GCATC	5 cut(s)	38, 194, 228, 669, 754
BplI	GAGNNNNNCTC	2 cut(s)	273, 305
BpmI	CTGGAG	3 cut(s)	180, 383, 817
BsaHI	GRCGYC	1 cut(s)	423
BsaJI	CCNNGG	3 cut(s)	84, 389, 706
BsaWI	WCCGGW	4 cut(s)	111, 278, 697, 847
BsaXI	ACNNNNNCTCC	2 cut(s)	331, 361
Bsc4I	CCNNNNNNNGG	2 cut(s)	269, 294
Bse118I	RCCGGY	1 cut(s)	697
Bse1I	ACTGG	3 cut(s)	594, 616, 800
Bse21I	CCTNAGG	1 cut(s)	958
BseAI	TCCGGA	2 cut(s)	111, 278
BseDI	CCNNGG	3 cut(s)	84, 389, 706
BseGI	GGATG	3 cut(s)	28, 259, 601
BseLI	CCNNNNNNNGG	2 cut(s)	269, 294
BseMII	CTCAG	2 cut(s)	969, 972
BseNI	ACTGG	3 cut(s)	594, 616, 800
BseRI	GAGGAG	1 cut(s)	463
BseYI	CCCAGC	1 cut(s)	647
BsgI	GTGCAG	1 cut(s)	541
BshFI	GGCC	3 cut(s)	42, 453, 1067
BshNI	GGYRCC	1 cut(s)	422
BshTI	ACCGGT	1 cut(s)	697
BsiHKAI	GWGCWC	1 cut(s)	111
BsiHKCI	CYCGRG	1 cut(s)	485
BsiSI	CCGG	4 cut(s)	112, 279, 698, 848
BslFI	GGGAC	1 cut(s)	622
BslI	CCNNNNNNNGG	2 cut(s)	269, 294
BsmAI	GTCTC	1 cut(s)	359
BsmFI	GGGAC	1 cut(s)	622
BsnI	GGCC	3 cut(s)	42, 453, 1067
BsoBI	CYCGRG	1 cut(s)	485
Bsp1286I	GDGCHC	1 cut(s)	111
Bsp13I	TCCGGA	2 cut(s)	111, 278
Bsp1407I	TGTACA	1 cut(s)	322
Bsp143I	GATC	1 cut(s)	670
Bsp19I	CCATGG	3 cut(s)	84, 389, 706
BspACI	CCGC	4 cut(s)	226, 255, 454, 626
BspANI	GGCC	3 cut(s)	42, 453, 1067
BspCNI	CTCAG	2 cut(s)	970, 971
BspEI	TCCGGA	2 cut(s)	111, 278
BspHI	TCATGA	1 cut(s)	774
BspLI	GGNNCC	1 cut(s)	424
BspT107I	GGYRCC	1 cut(s)	422
BsrFI	RCCGGY	1 cut(s)	697
BsrGI	TGTACA	1 cut(s)	322
BsrI	ACTGG	3 cut(s)	594, 616, 800
BssAI	RCCGGY	1 cut(s)	697
BssECI	CCNNGG	3 cut(s)	84, 389, 706
BssMI	GATC	1 cut(s)	670
BssNI	GRCGYC	1 cut(s)	423
BssT1I	CCWWGG	3 cut(s)	84, 389, 706
Bst4CI	ACNGT	2 cut(s)	269, 833
BstACI	GRCGYC	1 cut(s)	423
BstAPI	GCANNNNNTGC	1 cut(s)	519
BstAUI	TGTACA	1 cut(s)	322
BstC8I	GCNNGC	2 cut(s)	169, 1012
BstDEI	CTNAG	4 cut(s)	35, 528, 958, 978
BstDSI	CCRYGG	3 cut(s)	84, 389, 706
BstF5I	GGATG	3 cut(s)	28, 259, 601
BstH2I	RGCGCY	1 cut(s)	426
BstHHI	GCGC	3 cut(s)	425, 434, 620
BstKTI	GATC	1 cut(s)	673
BstMAI	GTCTC	1 cut(s)	359
BstMBI	GATC	1 cut(s)	670
BstMWI	GCNNNNNNNGC	5 cut(s)	216, 429, 431, 519, 657
BstNSI	RCATGY	7 cut(s)	67, 210, 517, 683, 722, 736, 910
Bsu36I	CCTNAGG	1 cut(s)	958
BsuI	GTATCC	2 cut(s)	108, 654
BsuRI	GGCC	3 cut(s)	42, 453, 1067
BtgI	CCRYGG	3 cut(s)	84, 389, 706
BtsCI	GGATG	3 cut(s)	28, 259, 601
BtsI	GCAGTG	1 cut(s)	627
BtsIMutI	CAGTG	2 cut(s)	587, 627
Cac8I	GCNNGC	2 cut(s)	169, 1012
CciI	TCATGA	1 cut(s)	774
CfoI	GCGC	3 cut(s)	425, 434, 620
Cfr10I	RCCGGY	1 cut(s)	697
CseI	GACGC	1 cut(s)	802
Csp6I	GTAC	4 cut(s)	61, 323, 525, 703
CspAI	ACCGGT	1 cut(s)	697
CspCI	CAANNNNNGTGG	2 cut(s)	573, 608
CviQI	GTAC	4 cut(s)	61, 323, 525, 703
DdeI	CTNAG	4 cut(s)	35, 528, 958, 978
DinI	GGCGCC	1 cut(s)	424
DpnI	GATC	1 cut(s)	672
DpnII	GATC	1 cut(s)	670
DraI	TTTAAA	1 cut(s)	93
DrdI	GACNNNNNNGTC	1 cut(s)	307
DseDI	GACNNNNNNGTC	1 cut(s)	307
EaeI	YGGCCR	1 cut(s)	451
EciI	GGCGGA	1 cut(s)	641
Ecl136II	GAGCTC	1 cut(s)	109
Eco130I	CCWWGG	3 cut(s)	84, 389, 706
Eco147I	AGGCCT	1 cut(s)	1067
Eco24I	GRGCYC	1 cut(s)	111
Eco32I	GATATC	1 cut(s)	124
Eco53kI	GAGCTC	1 cut(s)	109
Eco81I	CCTNAGG	1 cut(s)	958
Eco88I	CYCGRG	1 cut(s)	485
EcoICRI	GAGCTC	1 cut(s)	109
EcoRV	GATATC	1 cut(s)	124
EcoT14I	CCWWGG	3 cut(s)	84, 389, 706
EcoT22I	ATGCAT	1 cut(s)	148
EcoT38I	GRGCYC	1 cut(s)	111
EgeI	GGCGCC	1 cut(s)	424
EheI	GGCGCC	1 cut(s)	424
ErhI	CCWWGG	3 cut(s)	84, 389, 706
FaqI	GGGAC	1 cut(s)	622
Fnu4HI	GCNGC	1 cut(s)	454
FokI	GGATG	3 cut(s)	35, 246, 608
FriOI	GRGCYC	1 cut(s)	111
Fsp4HI	GCNGC	1 cut(s)	454
FspBI	CTAG	3 cut(s)	312, 344, 887
GlaI	GCGC	3 cut(s)	424, 433, 619
GluI	GCNGC	1 cut(s)	454
GsaI	CCCAGC	1 cut(s)	651
GsuI	CTGGAG	3 cut(s)	180, 383, 817
HaeII	RGCGCY	1 cut(s)	426
HaeIII	GGCC	3 cut(s)	42, 453, 1067
HapII	CCGG	4 cut(s)	112, 279, 698, 848
HgaI	GACGC	1 cut(s)	802
HhaI	GCGC	3 cut(s)	425, 434, 620
Hin1I	GRCGYC	1 cut(s)	423
Hin6I	GCGC	3 cut(s)	423, 432, 618
HinP1I	GCGC	3 cut(s)	423, 432, 618
HincII	GTYRAC	1 cut(s)	300
HindII	GTYRAC	1 cut(s)	300
HinfI	GANTC	4 cut(s)	80, 275, 301, 329
HpaII	CCGG	4 cut(s)	112, 279, 698, 848
HphI	GGTGA	5 cut(s)	180, 244, 740, 877, 911
Hpy166II	GTNNAC	4 cut(s)	300, 339, 703, 877
Hpy188I	TCNGA	4 cut(s)	160, 334, 351, 478
Hpy188III	TCNNGA	9 cut(s)	112, 197, 263, 279, 312, 362, 775, 817, 887
Hpy8I	GTNNAC	4 cut(s)	300, 339, 703, 877
Hpy99I	CGWCG	1 cut(s)	917
HpyAV	CCTTC	2 cut(s)	184, 988
HpyCH4III	ACNGT	2 cut(s)	269, 833
HpyCH4IV	ACGT	1 cut(s)	879
HpyCH4V	TGCA	7 cut(s)	77, 146, 185, 522, 689, 790, 950
HpyF10VI	GCNNNNNNNGC	5 cut(s)	216, 429, 431, 519, 657
HpyF3I	CTNAG	4 cut(s)	35, 528, 958, 978
HpySE526I	ACGT	1 cut(s)	879
Hsp92I	GRCGYC	1 cut(s)	423
HspAI	GCGC	3 cut(s)	423, 432, 618
KasI	GGCGCC	1 cut(s)	422
Kpn2I	TCCGGA	2 cut(s)	111, 278
Kzo9I	GATC	1 cut(s)	670
LmnI	GCTCC	5 cut(s)	106, 114, 176, 352, 798
LweI	GCATC	5 cut(s)	38, 194, 228, 669, 754
MaeI	CTAG	3 cut(s)	312, 344, 887
MaeII	ACGT	1 cut(s)	879
MaeIII	GTNAC	5 cut(s)	10, 550, 714, 728, 1022
MalI	GATC	1 cut(s)	672
MboI	GATC	1 cut(s)	670
MboII	GAAGA	3 cut(s)	241, 350, 1003
MhlI	GDGCHC	1 cut(s)	111
MluCI	AATT	2 cut(s)	17, 1038
Mly113I	GGCGCC	1 cut(s)	423
MlyI	GAGTC	2 cut(s)	295, 323
MmeI	TCCRAC	2 cut(s)	703, 981
Mph1103I	ATGCAT	1 cut(s)	148
MroI	TCCGGA	2 cut(s)	111, 278
MroXI	GAANNNNTTC	1 cut(s)	248
MseI	TTAA	2 cut(s)	92, 654
MslI	CAYNNNNRTG	2 cut(s)	135, 141
MspI	CCGG	4 cut(s)	112, 279, 698, 848
MwoI	GCNNNNNNNGC	5 cut(s)	216, 429, 431, 519, 657
NarI	GGCGCC	1 cut(s)	423
NcoI	CCATGG	3 cut(s)	84, 389, 706
NdeII	GATC	1 cut(s)	670
NlaIV	GGNNCC	1 cut(s)	424
NmeAIII	GCCGAG	1 cut(s)	48
NmuCI	GTSAC	3 cut(s)	550, 714, 728
NsiI	ATGCAT	1 cut(s)	148
NspI	RCATGY	7 cut(s)	67, 210, 517, 683, 722, 736, 910
PagI	TCATGA	1 cut(s)	774
PceI	AGGCCT	1 cut(s)	1067
PciI	ACATGT	3 cut(s)	679, 718, 732
PcsI	WCGNNNNNNNCGW	1 cut(s)	798
PdmI	GAANNNNTTC	1 cut(s)	248
PfeI	GAWTC	2 cut(s)	80, 275
PflFI	GACNNNGTC	1 cut(s)	154
PinAI	ACCGGT	1 cut(s)	697
PkrI	GCNGC	1 cut(s)	455
PleI	GAGTC	2 cut(s)	295, 323
PluTI	GGCGCC	1 cut(s)	426
PpsI	GAGTC	2 cut(s)	295, 323
PscI	ACATGT	3 cut(s)	679, 718, 732
Psp124BI	GAGCTC	1 cut(s)	111
PspFI	CCCAGC	1 cut(s)	647
PspN4I	GGNNCC	1 cut(s)	424
PsyI	GACNNNGTC	1 cut(s)	154
RsaI	GTAC	4 cut(s)	62, 324, 526, 704
RsaNI	GTAC	4 cut(s)	61, 323, 525, 703
RseI	CAYNNNNRTG	2 cut(s)	135, 141
SacI	GAGCTC	1 cut(s)	111
SaqAI	TTAA	2 cut(s)	92, 654
SatI	GCNGC	1 cut(s)	454
Sau3AI	GATC	1 cut(s)	670
ScaI	AGTACT	1 cut(s)	526
SchI	GAGTC	2 cut(s)	295, 323
SduI	GDGCHC	1 cut(s)	111
SetI	ASST	8 cut(s)	111, 349, 730, 867, 882, 964, 999, 1048
SfaNI	GCATC	5 cut(s)	38, 194, 228, 669, 754
SfoI	GGCGCC	1 cut(s)	424
SgrAI	CRCCGGYG	1 cut(s)	697
SmiMI	CAYNNNNRTG	2 cut(s)	135, 141
Sse9I	AATT	2 cut(s)	17, 1038
SseBI	AGGCCT	1 cut(s)	1067
SsiI	CCGC	4 cut(s)	226, 255, 454, 626
SspDI	GGCGCC	1 cut(s)	422
SspI	AATATT	2 cut(s)	398, 751
SspMI	CTAG	3 cut(s)	312, 344, 887
SstI	GAGCTC	1 cut(s)	111
StuI	AGGCCT	1 cut(s)	1067
StyI	CCWWGG	3 cut(s)	84, 389, 706
TaaI	ACNGT	2 cut(s)	269, 833
TaiI	ACGT	1 cut(s)	882
TaqI	TCGA	2 cut(s)	835, 912
TasI	AATT	2 cut(s)	17, 1038
TatI	WGTACW	3 cut(s)	60, 322, 524
TauI	GCSGC	1 cut(s)	456
TfiI	GAWTC	2 cut(s)	80, 275
Tru1I	TTAA	2 cut(s)	92, 654
Tru9I	TTAA	2 cut(s)	92, 654
TscAI	CASTG	2 cut(s)	594, 627
TseFI	GTSAC	3 cut(s)	550, 714, 728
Tsp45I	GTSAC	3 cut(s)	550, 714, 728
TspDTI	ATGAA	4 cut(s)	39, 554, 763, 791
TspRI	CASTG	2 cut(s)	594, 627
Tth111I	GACNNNGTC	1 cut(s)	154
XapI	RAATTY	1 cut(s)	1038
XbaI	TCTAGA	2 cut(s)	311, 886
XceI	RCATGY	7 cut(s)	67, 210, 517, 683, 722, 736, 910
XmnI	GAANNNNTTC	1 cut(s)	248
XspI	CTAG	3 cut(s)	312, 344, 887
ZrmI	AGTACT	1 cut(s)	526
Zsp2I	ATGCAT	1 cut(s)	148

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.