Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0001688

Physical Location & Seq

Genomic Coordinates Reverse (-)

9830198 .. 9832202

Gene Structure 2005 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g17220.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1080 bp

ATGGAAGCAGTTAACGAATTGGATGAAGCAACTCTAAGAGGCCAAGCAGATGTATGGAAGTACATGCTCGGGTTTGCAGATTCCATGGCTTTGAAATCTGCTGTGGAGCTCCGTATACCAGATATCATAAACTCTCATTGCCAGGCATTGAGTCTCTCTGATATAGTCTCAAACATCGATTCTAAATCACCCTCGCCAGACATCACATGCCTCTCTCGCATCATGAGGTTGCTTGTCCGCCGGAACATCTTCGCTGCACATCACGACGATGGAGATTCCGGCGAAACCCTCTACGGGTTGACTCCTTCGTCTAGATGGCTCTTGCAAGACTCAGAGCTCACTCTCGCTCCGATGGTTCTCTTACAGACAGATCCCATTTTAATGGCTCCAATGCAATATTTCAGCCAATGCGTCAAGCAAGGTGGTACACACGCCTTCTCGAAGGCGCATGGCCGTGATATTTGGCAATTCTTCTCGGAAAACCTCGAGGCCAACCAATTGTTCAACGATGCCATGGCGTGCAGCGCTAACATAATAATGAAAGTGATACTCGCCAGATGTAAGGGTGCGTTTGATGACGTGACAACACTGGTGGATGTTGGTGGTGGGACGGGAAGGGCGGCGGCGGAGATCGTGAAGGCGTATCCCAGCATTAAGGCCATCAACTTTGATCTACCATATGTGGTTGCAACAGCGCCGGCGTACCATGGGGTGTCGCATGTTGGAGGTGACATGTTTGATGAGGGCAATATTCCAAACGCTGATGCAATTTTCATGAAGTGGATTATGCACGACTGGAGTGACGGCGATTGCATCAAGATATTGAAGAACTGCCGGAAGGCGATACCGGAGAGAAGTGGGAAGGTGATTATTGTGGACGCTGTTCTGGAGCCAAATGGTGATGGCTTGTTTGACGACACAGGATTAGTTTTTGATCTGCTGATGATTACTCATAGCTCAGGTGGAAAGGAGAGGAGTGAGAGTGAATGGAAGCAGATGTTGGAACAAGCAGGCTTCCCTCGCTACAATATCATCAATATTCCAGCAGTAGTGTCCATTATCGAGGCATACCCTGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dimerisation Methyltransf_2

Protein Analysis

360

Amino Acids

39.43

Weight (kDa)

4.92

Isoelectric Point (pI)

45.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dimerisation	PF08100	19 - 110	2.2e-20	O-methyltransferase dimerisation domain
Methyltransf_2	PF00891	133 - 339	7e-59	O-methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001688)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g17220 FvH4_6g45070
malus_domestica	MD09G1089200.v1.1 MD09G1089800.v1.1 MD09G1090100.v1.1 MD09G1090200.v1.1 MD17G1079200.v1.1
prunus_persica	Prupe.3G235300_v2.0.a1 Prupe.3G235500_v2.0.a1
pyrus_communis	pycom09g01490 pycom17g07830
rosa_chinensis	RchiOBHm_Chr1g0324661 RchiOBHm_Chr2g0139131 RchiOBHm_Chr4g0427641 RchiOBHm_Chr4g0427651
rosa_laevigata	RLG00000007219 RLG00000007220 RLG00000019790 RLG00000021346 RLG00000021347
rosa_multiflora	Rmu_co8132516.1_g000001 Rmu_sc0001803.1_g000030 Rmu_sc0003399.1_g000006 Rmu_sc0009627.1_g000012 Rmu_sc0009627.1_g000013
rosa_roxburghii	Rroxscaffold_2G00105640 Rroxscaffold_5G00369270 Rroxscaffold_5G00369300
rosa_rugosa	Rorug02G0354700 Rorug02G0498000 Rorug04G0219000
rosa_samantha	Rh1CG065100 Rh1DG069400 Rh1DG070200 Rh2AG405100 Rh2BG415000 Rh2CG391300 Rh2DG424900 Rh4AG275500 Rh4BG281400 Rh4BG281500 Rh4CG296800 Rh4CG296900 Rh4DG278800 Rh4DG278900
rosa_wichuraiana	Rw1G005480 Rw2G033080 Rw4G023890 Rw4G023900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	307
AbsI	CCTCGAGG	1 cut(s)	485
AccI	GTMKAC	1 cut(s)	115
AciI	CCGC	4 cut(s)	238, 620, 623, 626
AclWI	GGATC	1 cut(s)	365
AcoI	YGGCCR	1 cut(s)	451
AfaI	GTAC	3 cut(s)	62, 427, 704
AfeI	AGCGCT	1 cut(s)	526
AfiI	CCNNNNNNNGG	1 cut(s)	294
AflIII	ACRYGT	1 cut(s)	732
AgsI	TTSAA	3 cut(s)	94, 505, 826
AjiI	CACGTC	1 cut(s)	580
AjnI	CCWGG	1 cut(s)	141
AjuI	GAANNNNNNNTTGG	4 cut(s)	485, 517, 983, 1015
AluBI	AGCT	3 cut(s)	109, 337, 957
AluI	AGCT	3 cut(s)	109, 337, 957
Alw21I	GWGCWC	2 cut(s)	111, 339
Alw26I	GTCTC	2 cut(s)	158, 172
AlwI	GGATC	1 cut(s)	365
Ama87I	CYCGRG	2 cut(s)	68, 485
Aor51HI	AGCGCT	1 cut(s)	526
AoxI	GGCC	4 cut(s)	40, 451, 489, 657
ApeKI	GCWGC	2 cut(s)	254, 522
Asp700I	GAANNNNTTC	1 cut(s)	248
AspLEI	GCGC	3 cut(s)	448, 527, 697
AsuHPI	GGTGA	4 cut(s)	180, 740, 877, 911
AvaI	CYCGRG	2 cut(s)	68, 485
BanII	GRGCYC	2 cut(s)	111, 339
Bbv12I	GWGCWC	2 cut(s)	111, 339
BbvI	GCAGC	2 cut(s)	241, 534
BccI	CCATC	5 cut(s)	263, 309, 346, 668, 896
BceAI	ACGGC	2 cut(s)	438, 820
BciT130I	CCWGG	1 cut(s)	143
BciVI	GTATCC	1 cut(s)	654
BcoDI	GTCTC	2 cut(s)	158, 172
BfaI	CTAG	1 cut(s)	312
BfoI	RGCGCY	2 cut(s)	528, 698
BfuI	GTATCC	1 cut(s)	654
BisI	GCNGC	4 cut(s)	255, 523, 621, 624
BlsI	GCNGC	4 cut(s)	256, 524, 622, 625
Bme1390I	CCNGG	1 cut(s)	143
BmeT110I	CYCGRG	2 cut(s)	68, 485
BmgBI	CACGTC	1 cut(s)	580
BmiI	GGNNCC	2 cut(s)	387, 891
BmrFI	CCNGG	1 cut(s)	143
BmsI	GCATC	4 cut(s)	228, 499, 754, 822
BpmI	CTGGAG	2 cut(s)	817, 908
Bpu10I	CCTNAGC	1 cut(s)	958
Bsa29I	ATCGAT	1 cut(s)	177
BsaJI	CCNNGG	3 cut(s)	84, 513, 706
BsaWI	WCCGGW	1 cut(s)	847
BsaXI	ACNNNNNCTCC	4 cut(s)	331, 361, 967, 997
Bsc4I	CCNNNNNNNGG	1 cut(s)	294
Bse118I	RCCGGY	1 cut(s)	697
Bse1I	ACTGG	2 cut(s)	594, 800
Bse3DI	GCAATG	1 cut(s)	136
BseBI	CCWGG	1 cut(s)	143
BseCI	ATCGAT	1 cut(s)	177
BseDI	CCNNGG	3 cut(s)	84, 513, 706
BseGI	GGATG	2 cut(s)	28, 601
BseLI	CCNNNNNNNGG	1 cut(s)	294
BseMI	GCAATG	1 cut(s)	136
BseMII	CTCAG	2 cut(s)	345, 972
BseNI	ACTGG	2 cut(s)	594, 800
BseRI	GAGGAG	1 cut(s)	988
BseXI	GCAGC	2 cut(s)	241, 534
BseYI	CCCAGC	1 cut(s)	647
BsgI	GTGCAG	2 cut(s)	240, 541
BshFI	GGCC	4 cut(s)	42, 453, 491, 659
BshVI	ATCGAT	1 cut(s)	177
BsiHKAI	GWGCWC	2 cut(s)	111, 339
BsiHKCI	CYCGRG	2 cut(s)	68, 485
BsiSI	CCGG	5 cut(s)	241, 279, 698, 835, 848
BslFI	GGGAC	1 cut(s)	622
BslI	CCNNNNNNNGG	1 cut(s)	294
BsmAI	GTCTC	2 cut(s)	158, 172
BsmFI	GGGAC	1 cut(s)	622
BsnI	GGCC	4 cut(s)	42, 453, 491, 659
BsoBI	CYCGRG	2 cut(s)	68, 485
Bsp1286I	GDGCHC	2 cut(s)	111, 339
Bsp143I	GATC	4 cut(s)	370, 630, 670, 934
Bsp19I	CCATGG	3 cut(s)	84, 513, 706
BspACI	CCGC	4 cut(s)	238, 620, 623, 626
BspANI	GGCC	4 cut(s)	42, 453, 491, 659
BspCNI	CTCAG	2 cut(s)	344, 971
BspDI	ATCGAT	1 cut(s)	177
BspHI	TCATGA	2 cut(s)	222, 774
BspLI	GGNNCC	2 cut(s)	387, 891
BspPI	GGATC	1 cut(s)	365
BsrDI	GCAATG	1 cut(s)	136
BsrFI	RCCGGY	1 cut(s)	697
BsrI	ACTGG	2 cut(s)	594, 800
BssAI	RCCGGY	1 cut(s)	697
BssECI	CCNNGG	3 cut(s)	84, 513, 706
BssMI	GATC	4 cut(s)	370, 630, 670, 934
BssNAI	GTATAC	1 cut(s)	116
BssT1I	CCWWGG	3 cut(s)	84, 513, 706
Bst1107I	GTATAC	1 cut(s)	116
Bst2UI	CCWGG	1 cut(s)	143
BstC8I	GCNNGC	3 cut(s)	520, 699, 1012
BstDEI	CTNAG	3 cut(s)	35, 331, 958
BstDSI	CCRYGG	3 cut(s)	84, 513, 706
BstF5I	GGATG	2 cut(s)	28, 601
BstH2I	RGCGCY	2 cut(s)	528, 698
BstHHI	GCGC	3 cut(s)	448, 527, 697
BstKTI	GATC	4 cut(s)	373, 633, 673, 937
BstMAI	GTCTC	2 cut(s)	158, 172
BstMBI	GATC	4 cut(s)	370, 630, 670, 934
BstMWI	GCNNNNNNNGC	3 cut(s)	216, 524, 1020
BstNI	CCWGG	1 cut(s)	143
BstNSI	RCATGY	4 cut(s)	67, 210, 722, 736
BstSCI	CCNGG	1 cut(s)	141
BstV1I	GCAGC	2 cut(s)	241, 534
BstX2I	RGATCY	1 cut(s)	370
BstXI	CCANNNNNNTGG	1 cut(s)	382
BstYI	RGATCY	1 cut(s)	370
BstZ17I	GTATAC	1 cut(s)	116
Bsu15I	ATCGAT	1 cut(s)	177
BsuI	GTATCC	1 cut(s)	654
BsuRI	GGCC	4 cut(s)	42, 453, 491, 659
BsuTUI	ATCGAT	1 cut(s)	177
BtgI	CCRYGG	3 cut(s)	84, 513, 706
BtrI	CACGTC	1 cut(s)	580
BtsCI	GGATG	2 cut(s)	28, 601
BtsIMutI	CAGTG	1 cut(s)	587
Cac8I	GCNNGC	3 cut(s)	520, 699, 1012
CciI	TCATGA	2 cut(s)	222, 774
CfoI	GCGC	3 cut(s)	448, 527, 697
Cfr10I	RCCGGY	1 cut(s)	697
ClaI	ATCGAT	1 cut(s)	177
CseI	GACGC	2 cut(s)	400, 887
Csp6I	GTAC	3 cut(s)	61, 426, 703
CspCI	CAANNNNNGTGG	4 cut(s)	403, 438, 573, 608
CviQI	GTAC	3 cut(s)	61, 426, 703
DdeI	CTNAG	3 cut(s)	35, 331, 958
DpnI	GATC	4 cut(s)	372, 632, 672, 936
DpnII	GATC	4 cut(s)	370, 630, 670, 934
DrdI	GACNNNNNNGTC	1 cut(s)	307
DseDI	GACNNNNNNGTC	1 cut(s)	307
EaeI	YGGCCR	1 cut(s)	451
EciI	GGCGGA	2 cut(s)	227, 641
Ecl136II	GAGCTC	2 cut(s)	109, 337
Eco130I	CCWWGG	3 cut(s)	84, 513, 706
Eco24I	GRGCYC	2 cut(s)	111, 339
Eco32I	GATATC	1 cut(s)	124
Eco47III	AGCGCT	1 cut(s)	526
Eco53kI	GAGCTC	2 cut(s)	109, 337
Eco88I	CYCGRG	2 cut(s)	68, 485
EcoICRI	GAGCTC	2 cut(s)	109, 337
EcoRII	CCWGG	1 cut(s)	141
EcoRV	GATATC	1 cut(s)	124
EcoT14I	CCWWGG	3 cut(s)	84, 513, 706
EcoT38I	GRGCYC	2 cut(s)	111, 339
ErhI	CCWWGG	3 cut(s)	84, 513, 706
FaqI	GGGAC	1 cut(s)	622
FauNDI	CATATG	1 cut(s)	679
FblI	GTMKAC	1 cut(s)	115
Fnu4HI	GCNGC	4 cut(s)	255, 523, 621, 624
FokI	GGATG	2 cut(s)	35, 608
FriOI	GRGCYC	2 cut(s)	111, 339
Fsp4HI	GCNGC	4 cut(s)	255, 523, 621, 624
FspBI	CTAG	1 cut(s)	312
GlaI	GCGC	3 cut(s)	447, 526, 696
GluI	GCNGC	4 cut(s)	255, 523, 621, 624
GsaI	CCCAGC	1 cut(s)	651
GsuI	CTGGAG	2 cut(s)	817, 908
HaeII	RGCGCY	2 cut(s)	528, 698
HaeIII	GGCC	4 cut(s)	42, 453, 491, 659
HapII	CCGG	5 cut(s)	241, 279, 698, 835, 848
HgaI	GACGC	2 cut(s)	400, 887
HhaI	GCGC	3 cut(s)	448, 527, 697
Hin6I	GCGC	3 cut(s)	446, 525, 695
HinP1I	GCGC	3 cut(s)	446, 525, 695
HincII	GTYRAC	2 cut(s)	13, 300
HindII	GTYRAC	2 cut(s)	13, 300
HinfI	GANTC	6 cut(s)	80, 151, 179, 275, 301, 329
HpaI	GTTAAC	1 cut(s)	13
HpaII	CCGG	5 cut(s)	241, 279, 698, 835, 848
HphI	GGTGA	4 cut(s)	180, 740, 877, 911
Hpy166II	GTNNAC	5 cut(s)	13, 116, 300, 428, 877
Hpy188I	TCNGA	4 cut(s)	160, 334, 351, 478
Hpy188III	TCNNGA	8 cut(s)	223, 263, 312, 439, 634, 775, 817, 887
Hpy8I	GTNNAC	5 cut(s)	13, 116, 300, 428, 877
Hpy99I	CGWCG	1 cut(s)	269
HpyAV	CCTTC	7 cut(s)	315, 436, 445, 609, 631, 832, 856
HpyCH4IV	ACGT	1 cut(s)	579
HpyCH4V	TGCA	9 cut(s)	77, 257, 325, 394, 522, 689, 767, 790, 813
HpyF10VI	GCNNNNNNNGC	3 cut(s)	216, 524, 1020
HpyF3I	CTNAG	3 cut(s)	35, 331, 958
HpySE526I	ACGT	1 cut(s)	579
HspAI	GCGC	3 cut(s)	446, 525, 695
KroI	GCCGGC	1 cut(s)	697
KroNI	GCCGGC	1 cut(s)	699
KspAI	GTTAAC	1 cut(s)	13
Kzo9I	GATC	4 cut(s)	370, 630, 670, 934
LmnI	GCTCC	5 cut(s)	106, 114, 352, 391, 889
Lsp1109I	GCAGC	2 cut(s)	241, 534
LweI	GCATC	4 cut(s)	228, 499, 754, 822
MaeI	CTAG	1 cut(s)	312
MaeII	ACGT	1 cut(s)	579
MaeIII	GTNAC	3 cut(s)	580, 728, 800
MalI	GATC	4 cut(s)	372, 632, 672, 936
MboI	GATC	4 cut(s)	370, 630, 670, 934
MboII	GAAGA	3 cut(s)	241, 463, 838
MfeI	CAATTG	1 cut(s)	497
MflI	RGATCY	1 cut(s)	370
MhlI	GDGCHC	2 cut(s)	111, 339
MluCI	AATT	4 cut(s)	17, 467, 497, 768
MlyI	GAGTC	3 cut(s)	160, 295, 323
MmeI	TCCRAC	2 cut(s)	703, 981
MreI	CGCCGGCG	1 cut(s)	697
MroNI	GCCGGC	1 cut(s)	697
MroXI	GAANNNNTTC	1 cut(s)	248
MseI	TTAA	3 cut(s)	12, 380, 654
MslI	CAYNNNNRTG	4 cut(s)	267, 380, 453, 536
MspI	CCGG	5 cut(s)	241, 279, 698, 835, 848
MspR9I	CCNGG	1 cut(s)	143
MunI	CAATTG	1 cut(s)	497
MvaI	CCWGG	1 cut(s)	143
MwoI	GCNNNNNNNGC	3 cut(s)	216, 524, 1020
NaeI	GCCGGC	1 cut(s)	699
NcoI	CCATGG	3 cut(s)	84, 513, 706
NdeI	CATATG	1 cut(s)	679
NdeII	GATC	4 cut(s)	370, 630, 670, 934
NgoMIV	GCCGGC	1 cut(s)	697
NlaIV	GGNNCC	2 cut(s)	387, 891
NmuCI	GTSAC	3 cut(s)	580, 728, 800
NspI	RCATGY	4 cut(s)	67, 210, 722, 736
PaeR7I	CTCGAG	1 cut(s)	485
PagI	TCATGA	2 cut(s)	222, 774
PciI	ACATGT	1 cut(s)	732
PdiI	GCCGGC	1 cut(s)	699
PdmI	GAANNNNTTC	1 cut(s)	248
PfeI	GAWTC	3 cut(s)	80, 179, 275
PkrI	GCNGC	4 cut(s)	256, 524, 622, 625
PleI	GAGTC	3 cut(s)	159, 295, 323
PpsI	GAGTC	3 cut(s)	159, 295, 323
PscI	ACATGT	1 cut(s)	732
Psp124BI	GAGCTC	2 cut(s)	111, 339
Psp6I	CCWGG	1 cut(s)	141
PspFI	CCCAGC	1 cut(s)	647
PspGI	CCWGG	1 cut(s)	141
PspN4I	GGNNCC	2 cut(s)	387, 891
PspXI	VCTCGAGB	1 cut(s)	485
PsuI	RGATCY	1 cut(s)	370
RsaI	GTAC	3 cut(s)	62, 427, 704
RsaNI	GTAC	3 cut(s)	61, 426, 703
RseI	CAYNNNNRTG	4 cut(s)	267, 380, 453, 536
SacI	GAGCTC	2 cut(s)	111, 339
SaqAI	TTAA	3 cut(s)	12, 380, 654
SatI	GCNGC	4 cut(s)	255, 523, 621, 624
Sau3AI	GATC	4 cut(s)	370, 630, 670, 934
SchI	GAGTC	3 cut(s)	160, 295, 323
ScrFI	CCNGG	1 cut(s)	143
SduI	GDGCHC	2 cut(s)	111, 339
SfaNI	GCATC	4 cut(s)	228, 499, 754, 822
Sfr274I	CTCGAG	1 cut(s)	485
SgrAI	CRCCGGYG	1 cut(s)	697
SlaI	CTCGAG	1 cut(s)	485
SmiMI	CAYNNNNRTG	4 cut(s)	267, 380, 453, 536
SmlI	CTYRAG	1 cut(s)	485
SmoI	CTYRAG	1 cut(s)	485
Sse9I	AATT	4 cut(s)	17, 467, 497, 768
SsiI	CCGC	4 cut(s)	238, 620, 623, 626
SspI	AATATT	3 cut(s)	398, 751, 1039
SspMI	CTAG	1 cut(s)	312
SstI	GAGCTC	2 cut(s)	111, 339
StyD4I	CCNGG	1 cut(s)	141
StyI	CCWWGG	3 cut(s)	84, 513, 706
TaiI	ACGT	1 cut(s)	582
TaqI	TCGA	4 cut(s)	177, 440, 486, 1062
TasI	AATT	4 cut(s)	17, 467, 497, 768
TatI	WGTACW	1 cut(s)	60
TauI	GCSGC	2 cut(s)	623, 626
TfiI	GAWTC	3 cut(s)	80, 179, 275
Tru1I	TTAA	3 cut(s)	12, 380, 654
Tru9I	TTAA	3 cut(s)	12, 380, 654
TscAI	CASTG	1 cut(s)	594
TseFI	GTSAC	3 cut(s)	580, 728, 800
TseI	GCWGC	2 cut(s)	254, 522
Tsp45I	GTSAC	3 cut(s)	580, 728, 800
TspDTI	ATGAA	4 cut(s)	39, 554, 763, 791
TspGWI	ACGGA	1 cut(s)	101
TspRI	CASTG	1 cut(s)	594
XbaI	TCTAGA	1 cut(s)	311
XceI	RCATGY	4 cut(s)	67, 210, 722, 736
XhoI	CTCGAG	1 cut(s)	485
XmiI	GTMKAC	1 cut(s)	115
XmnI	GAANNNNTTC	1 cut(s)	248
XspI	CTAG	1 cut(s)	312

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.