Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr09

Orthogroup ID

OG0001688

Physical Location & Seq

Genomic Coordinates Forward (+)

6582196 .. 6583522

Gene Structure 1327 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD09G1090200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1095 bp

ATGGAAATGCAGGAAGCAACAGAAGTTGAGGCAAGCCTAAGAGGCCAAGCAGATATATGGAAGTACATGTTTGGTTTTGCTGATTCCATGGCCTTAAAATGTGCTGTCGAACTACGCATTGCCGATATCATACACTCTCATAGTCCTACTGATGGTGCCTCAAACTCAAGGCCTATGATCACTTTGTCCCAATTAGCCTCATCCATAGCACCCTCCCCAGACATGACGTACCTCACACGCATCATGAGACTTCTTGTCCGCCGGAATATATTTGCCATTCATCACTCATCTGATGGCGAGGAACCACTTTATGGGTTGACACACTCATCAAGATGGTTGTTACATAATACAGAGCTGAGCCTAGCCCCAATGCTTGTGATGGAGAATCACCCTTGCCTAATGGCCCCTTGGCACTATTTCAGCCAATGCGTCAAAGAAGGAGGTCCATATGCCTTTAAGATGGCCCATGGACTTGAGATTTGGGACTATGCGTCCCAAAATCCAGAGTTCAACAAATTGTTCAACGATGGTATGGCCTGTACTGCTAGGGTTGTGATGAAGGCAATACTCACAGGTTATGAACATGGGTTTGATGGTGTGGGATCGTTAGTGGATGTAGGTGGTGGGACTGGAAGTGCAGTGGCTGAGATTGTCAAGTCCTATCCCAACATCAAAGGTTTCAATTTTGATCTGCCCCATGTCGTAGCCACAGCACCGGTGTACCATGGTGTGTCACATGTAGGTGGTGATATGTTTGAGGGCAGTATTCCAAATGCTGATGCAGTTTTCATGAAGTGGATTATGCATGATTGGAGTGACAGTGATTGCATCAAGATTTTAAAGAATTGTCGAAAAGCAATACCCGAAAAAAGTGGGAAGATCATTATTGTTGATATAGTTCTAGAGCCAAATGGTGAAGGGATTCTGGATGACACACGATTGGTCTTTGATTTATTGATGATTGCACACACGTCAGGTGGAAGAGAGAGGACTGAGACTGAATGGAAGAATATATTGGAAGAAGGAGGTTTCCCTCGCTACAAAGTCATCAAAATTCCAGCTTTAGCATCCATTGTTGAGGCCTACCCTATGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dimerisation Methyltransf_2

Protein Analysis

365

Amino Acids

40.33

Weight (kDa)

5.57

Isoelectric Point (pI)

41.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dimerisation	PF08100	20 - 115	1e-18	O-methyltransferase dimerisation domain
Methyltransf_2	PF00891	137 - 344	5e-64	O-methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001688)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g17220 FvH4_6g45070
malus_domestica	MD09G1089200.v1.1 MD09G1089800.v1.1 MD09G1090100.v1.1 MD09G1090200.v1.1 MD17G1079200.v1.1
prunus_persica	Prupe.3G235300_v2.0.a1 Prupe.3G235500_v2.0.a1
pyrus_communis	pycom09g01490 pycom17g07830
rosa_chinensis	RchiOBHm_Chr1g0324661 RchiOBHm_Chr2g0139131 RchiOBHm_Chr4g0427641 RchiOBHm_Chr4g0427651
rosa_laevigata	RLG00000007219 RLG00000007220 RLG00000019790 RLG00000021346 RLG00000021347
rosa_multiflora	Rmu_co8132516.1_g000001 Rmu_sc0001803.1_g000030 Rmu_sc0003399.1_g000006 Rmu_sc0009627.1_g000012 Rmu_sc0009627.1_g000013
rosa_roxburghii	Rroxscaffold_2G00105640 Rroxscaffold_5G00369270 Rroxscaffold_5G00369300
rosa_rugosa	Rorug02G0354700 Rorug02G0498000 Rorug04G0219000
rosa_samantha	Rh1CG065100 Rh1DG069400 Rh1DG070200 Rh2AG405100 Rh2BG415000 Rh2CG391300 Rh2DG424900 Rh4AG275500 Rh4BG281400 Rh4BG281500 Rh4CG296800 Rh4CG296900 Rh4DG278800 Rh4DG278900
rosa_wichuraiana	Rw1G005480 Rw2G033080 Rw4G023890 Rw4G023900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	155
AccB7I	CCANNNNNTGG	1 cut(s)	311
AciI	CCGC	1 cut(s)	259
AclWI	GGATC	1 cut(s)	610
AcsI	RAATTY	1 cut(s)	1053
AfaI	GTAC	4 cut(s)	65, 230, 541, 722
AfiI	CCNNNNNNNGG	2 cut(s)	152, 311
AflIII	ACRYGT	3 cut(s)	66, 736, 969
AgeI	ACCGGT	1 cut(s)	715
AgsI	TTSAA	3 cut(s)	511, 523, 682
AhdI	GACNNNNNGTC	2 cut(s)	254, 490
AjiI	CACGTC	1 cut(s)	972
AjuI	GAANNNNNNNTTGG	2 cut(s)	998, 1030
AluBI	AGCT	2 cut(s)	355, 1061
AluI	AGCT	2 cut(s)	355, 1061
Alw26I	GTCTC	2 cut(s)	241, 989
AlwI	GGATC	1 cut(s)	610
AlwNI	CAGNNNCTG	1 cut(s)	644
AoxI	GGCC	7 cut(s)	43, 90, 170, 402, 462, 534, 1080
ApoI	RAATTY	1 cut(s)	1053
ArsI	GACNNNNNNTTYG	2 cut(s)	462, 494
AsiGI	ACCGGT	1 cut(s)	715
Asp700I	GAANNNNTTC	1 cut(s)	921
AspS9I	GGNCC	3 cut(s)	403, 443, 463
AsuHPI	GGTGA	3 cut(s)	380, 758, 926
AvaII	GGWCC	1 cut(s)	443
BaeI	ACNNNNGTAYC	2 cut(s)	704, 737
BanI	GGYRCC	1 cut(s)	155
BccI	CCATC	7 cut(s)	146, 287, 327, 373, 454, 521, 587
BclI	TGATCA	1 cut(s)	177
BcoDI	GTCTC	2 cut(s)	241, 989
BfaI	CTAG	3 cut(s)	362, 546, 902
BglI	GCCNNNNNGGC	1 cut(s)	42
BlpI	GCTNAGC	1 cut(s)	356
Bme18I	GGWCC	1 cut(s)	443
BmeRI	GACNNNNNGTC	2 cut(s)	254, 490
BmgBI	CACGTC	1 cut(s)	972
BmgT120I	GGNCC	3 cut(s)	403, 443, 463
BmiI	GGNNCC	3 cut(s)	157, 303, 405
BmsI	GCATC	4 cut(s)	249, 769, 837, 1076
Bpu1102I	GCTNAGC	1 cut(s)	356
BpuEI	CTTGAG	2 cut(s)	151, 494
BsaJI	CCNNGG	4 cut(s)	87, 407, 466, 724
BsaWI	WCCGGW	1 cut(s)	715
BsaXI	ACNNNNNCTCC	2 cut(s)	805, 835
Bsc4I	CCNNNNNNNGG	2 cut(s)	152, 311
Bse118I	RCCGGY	1 cut(s)	715
Bse1I	ACTGG	1 cut(s)	634
Bse3DI	GCAATG	1 cut(s)	117
BseDI	CCNNGG	4 cut(s)	87, 407, 466, 724
BseGI	GGATG	4 cut(s)	200, 619, 934, 1067
BseLI	CCNNNNNNNGG	2 cut(s)	152, 311
BseMI	GCAATG	1 cut(s)	117
BseMII	CTCAG	3 cut(s)	347, 636, 984
BseNI	ACTGG	1 cut(s)	634
BsgI	GTGCAG	1 cut(s)	657
BshFI	GGCC	7 cut(s)	45, 92, 172, 404, 464, 536, 1082
BshNI	GGYRCC	1 cut(s)	155
BshTI	ACCGGT	1 cut(s)	715
BsiSI	CCGG	2 cut(s)	262, 716
BslFI	GGGAC	4 cut(s)	172, 478, 497, 640
BslI	CCNNNNNNNGG	2 cut(s)	152, 311
BsmAI	GTCTC	2 cut(s)	241, 989
BsmFI	GGGAC	4 cut(s)	172, 478, 497, 640
BsnI	GGCC	7 cut(s)	45, 92, 172, 404, 464, 536, 1082
Bsp143I	GATC	4 cut(s)	177, 602, 688, 879
Bsp1720I	GCTNAGC	1 cut(s)	356
Bsp19I	CCATGG	3 cut(s)	87, 466, 724
BspACI	CCGC	1 cut(s)	259
BspANI	GGCC	7 cut(s)	45, 92, 172, 404, 464, 536, 1082
BspCNI	CTCAG	3 cut(s)	348, 637, 985
BspHI	TCATGA	2 cut(s)	243, 789
BspLI	GGNNCC	3 cut(s)	157, 303, 405
BspPI	GGATC	1 cut(s)	610
BspT107I	GGYRCC	1 cut(s)	155
BsrDI	GCAATG	1 cut(s)	117
BsrFI	RCCGGY	1 cut(s)	715
BsrI	ACTGG	1 cut(s)	634
BssAI	RCCGGY	1 cut(s)	715
BssECI	CCNNGG	4 cut(s)	87, 407, 466, 724
BssMI	GATC	4 cut(s)	177, 602, 688, 879
BssT1I	CCWWGG	4 cut(s)	87, 407, 466, 724
Bst4CI	ACNGT	1 cut(s)	821
Bst6I	CTCTTC	1 cut(s)	976
BstC8I	GCNNGC	1 cut(s)	34
BstDEI	CTNAG	4 cut(s)	38, 356, 645, 993
BstDSI	CCRYGG	3 cut(s)	87, 466, 724
BstF5I	GGATG	4 cut(s)	200, 619, 934, 1067
BstKTI	GATC	4 cut(s)	180, 605, 691, 882
BstMAI	GTCTC	2 cut(s)	241, 989
BstMBI	GATC	4 cut(s)	177, 602, 688, 879
BstMWI	GCNNNNNNNGC	2 cut(s)	42, 542
BstNSI	RCATGY	2 cut(s)	70, 740
BsuRI	GGCC	7 cut(s)	45, 92, 172, 404, 464, 536, 1082
BtgI	CCRYGG	3 cut(s)	87, 466, 724
BtrI	CACGTC	1 cut(s)	972
BtsCI	GGATG	4 cut(s)	200, 619, 934, 1067
BtsI	GCAGTG	1 cut(s)	645
BtsIMutI	CAGTG	2 cut(s)	645, 826
Cac8I	GCNNGC	1 cut(s)	34
CaiI	CAGNNNCTG	1 cut(s)	644
CciI	TCATGA	2 cut(s)	243, 789
Cfr10I	RCCGGY	1 cut(s)	715
Cfr13I	GGNCC	3 cut(s)	403, 443, 463
CseI	GACGC	2 cut(s)	418, 480
Csp6I	GTAC	4 cut(s)	64, 229, 540, 721
CspAI	ACCGGT	1 cut(s)	715
CviQI	GTAC	4 cut(s)	64, 229, 540, 721
DdeI	CTNAG	4 cut(s)	38, 356, 645, 993
DpnI	GATC	4 cut(s)	179, 604, 690, 881
DpnII	GATC	4 cut(s)	177, 602, 688, 879
DraI	TTTAAA	1 cut(s)	840
DriI	GACNNNNNGTC	2 cut(s)	254, 490
Eam1104I	CTCTTC	1 cut(s)	976
Eam1105I	GACNNNNNGTC	2 cut(s)	254, 490
EarI	CTCTTC	1 cut(s)	976
EciI	GGCGGA	1 cut(s)	248
Eco130I	CCWWGG	4 cut(s)	87, 407, 466, 724
Eco147I	AGGCCT	2 cut(s)	172, 1082
Eco32I	GATATC	1 cut(s)	127
Eco47I	GGWCC	1 cut(s)	443
EcoRV	GATATC	1 cut(s)	127
EcoT14I	CCWWGG	4 cut(s)	87, 407, 466, 724
EcoT22I	ATGCAT	1 cut(s)	807
ErhI	CCWWGG	4 cut(s)	87, 407, 466, 724
FaqI	GGGAC	4 cut(s)	172, 478, 497, 640
FauNDI	CATATG	1 cut(s)	448
FbaI	TGATCA	1 cut(s)	177
FokI	GGATG	4 cut(s)	187, 626, 941, 1054
FspBI	CTAG	3 cut(s)	362, 546, 902
HaeIII	GGCC	7 cut(s)	45, 92, 172, 404, 464, 536, 1082
HapII	CCGG	2 cut(s)	262, 716
HgaI	GACGC	2 cut(s)	418, 480
HincII	GTYRAC	1 cut(s)	318
HindII	GTYRAC	1 cut(s)	318
HinfI	GANTC	3 cut(s)	83, 385, 922
HpaII	CCGG	2 cut(s)	262, 716
HphI	GGTGA	3 cut(s)	380, 758, 926
Hpy166II	GTNNAC	2 cut(s)	318, 721
Hpy188I	TCNGA	1 cut(s)	292
Hpy188III	TCNNGA	7 cut(s)	244, 330, 503, 790, 832, 902, 926
Hpy8I	GTNNAC	2 cut(s)	318, 721
HpyAV	CCTTC	4 cut(s)	431, 553, 911, 1016
HpyCH4III	ACNGT	1 cut(s)	821
HpyCH4IV	ACGT	2 cut(s)	227, 971
HpyCH4V	TGCA	6 cut(s)	10, 638, 782, 805, 828, 965
HpyF10VI	GCNNNNNNNGC	2 cut(s)	42, 542
HpyF3I	CTNAG	4 cut(s)	38, 356, 645, 993
HpySE526I	ACGT	2 cut(s)	227, 971
Ksp22I	TGATCA	1 cut(s)	177
Kzo9I	GATC	4 cut(s)	177, 602, 688, 879
LweI	GCATC	4 cut(s)	249, 769, 837, 1076
MaeI	CTAG	3 cut(s)	362, 546, 902
MaeII	ACGT	2 cut(s)	227, 971
MaeIII	GTNAC	3 cut(s)	339, 732, 815
MalI	GATC	4 cut(s)	179, 604, 690, 881
MboI	GATC	4 cut(s)	177, 602, 688, 879
MboII	GAAGA	4 cut(s)	889, 993, 1018, 1031
MluCI	AATT	5 cut(s)	191, 515, 682, 844, 1053
Mph1103I	ATGCAT	1 cut(s)	807
MroXI	GAANNNNTTC	1 cut(s)	921
MseI	TTAA	3 cut(s)	95, 456, 839
MslI	CAYNNNNRTG	2 cut(s)	331, 741
MspI	CCGG	2 cut(s)	262, 716
MwoI	GCNNNNNNNGC	2 cut(s)	42, 542
NcoI	CCATGG	3 cut(s)	87, 466, 724
NdeI	CATATG	1 cut(s)	448
NdeII	GATC	4 cut(s)	177, 602, 688, 879
NlaIV	GGNNCC	3 cut(s)	157, 303, 405
NmuCI	GTSAC	2 cut(s)	732, 815
NsiI	ATGCAT	1 cut(s)	807
NspI	RCATGY	2 cut(s)	70, 740
PagI	TCATGA	2 cut(s)	243, 789
PceI	AGGCCT	2 cut(s)	172, 1082
PciI	ACATGT	2 cut(s)	66, 736
PdmI	GAANNNNTTC	1 cut(s)	921
PfeI	GAWTC	3 cut(s)	83, 385, 922
PflMI	CCANNNNNTGG	1 cut(s)	311
PinAI	ACCGGT	1 cut(s)	715
PscI	ACATGT	2 cut(s)	66, 736
PspN4I	GGNNCC	3 cut(s)	157, 303, 405
PspPI	GGNCC	3 cut(s)	403, 443, 463
PstNI	CAGNNNCTG	1 cut(s)	644
RsaI	GTAC	4 cut(s)	65, 230, 541, 722
RsaNI	GTAC	4 cut(s)	64, 229, 540, 721
RseI	CAYNNNNRTG	2 cut(s)	331, 741
SaqAI	TTAA	3 cut(s)	95, 456, 839
Sau3AI	GATC	4 cut(s)	177, 602, 688, 879
Sau96I	GGNCC	3 cut(s)	403, 443, 463
SfaNI	GCATC	4 cut(s)	249, 769, 837, 1076
SgrAI	CRCCGGYG	1 cut(s)	715
SinI	GGWCC	1 cut(s)	443
SmiMI	CAYNNNNRTG	2 cut(s)	331, 741
SmlI	CTYRAG	2 cut(s)	166, 473
SmoI	CTYRAG	2 cut(s)	166, 473
Sse9I	AATT	5 cut(s)	191, 515, 682, 844, 1053
SseBI	AGGCCT	2 cut(s)	172, 1082
SsiI	CCGC	1 cut(s)	259
SspMI	CTAG	3 cut(s)	362, 546, 902
StuI	AGGCCT	2 cut(s)	172, 1082
StyI	CCWWGG	4 cut(s)	87, 407, 466, 724
TaaI	ACNGT	1 cut(s)	821
TaiI	ACGT	2 cut(s)	230, 974
TaqI	TCGA	2 cut(s)	108, 850
TasI	AATT	5 cut(s)	191, 515, 682, 844, 1053
TatI	WGTACW	2 cut(s)	63, 539
TfiI	GAWTC	3 cut(s)	83, 385, 922
Tru1I	TTAA	3 cut(s)	95, 456, 839
Tru9I	TTAA	3 cut(s)	95, 456, 839
TscAI	CASTG	2 cut(s)	645, 826
TseFI	GTSAC	2 cut(s)	732, 815
Tsp45I	GTSAC	2 cut(s)	732, 815
TspDTI	ATGAA	5 cut(s)	269, 572, 594, 778, 806
TspRI	CASTG	2 cut(s)	645, 826
Van91I	CCANNNNNTGG	1 cut(s)	311
VpaK11BI	GGWCC	1 cut(s)	443
XapI	RAATTY	1 cut(s)	1053
XbaI	TCTAGA	1 cut(s)	901
XceI	RCATGY	2 cut(s)	70, 740
XmnI	GAANNNNTTC	1 cut(s)	921
XspI	CTAG	3 cut(s)	362, 546, 902
Zsp2I	ATGCAT	1 cut(s)	807

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.