Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0001688

Physical Location & Seq

Genomic Coordinates Forward (+)

6542993 .. 6543754

Gene Structure 762 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1079200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 762 bp

ATGTTTGGTTTTGCTGATTCCATGGCCTTAAAATGCGTTGTGGAGCTACGCATAGCCGATATCATACACTCCCATAGTCCTAATGCTGGTGCCTCAAACTCAAAGCCTATGATCACTTTGTCCCAATTAGCCTCATGCATAGCACCCTCCCTAGAAATCACATGCCTCACACGCATCATGAGACTTCTTGTCCGCCAAAATATATTCACTGTTCATCACCCATCCGATGGTGGGGAACCTCTCTATGGGTTGACACACTCATCAAGATGGTTGCTACATGATGCTGAGCTGAGCCTAGCTCCAATGCTTATGATGGAGAATCACCCTTGCCTAATGGTTCCTTGGCATTATTTCGCCCAATGCATCAAAGGAGGAGGTCCATGTGCCTTTAAGATGGCCCATGGGCTTGAGATTTGGGACTATGCGTCTCAAAATCCAGAGTTCAACAAATTATTCAATGATGGAATGGCCTGTACGGCTAGGGTTGTGATGAAGGCAATACTCACAGGTTATGAACATGGGTTTGATAGTATAGGATCGTTAGTGGATGTAGGTGGTGGGACTGGAGGCGCAGTGGCTGAGATTGTCAAGGCATATCCCAATATCAAGGGTTTCAATTTTGACCTGCCGCATGTCGTAGCCGGATTTGGATCATTTCCTGAGCTAATGGAGAGGATCCTTCTGACCAAGTGTTATGGGCCGTTGGATTTTCATCCAACGGCTATAATTATATTAACTTTAAAAGGACCCACCTGTTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Dimerisation Methyltransf_2

Protein Analysis

254

Amino Acids

27.56

Weight (kDa)

6.29

Isoelectric Point (pI)

40.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Dimerisation	PF08100	1 - 93	1.6e-16	O-methyltransferase dimerisation domain
Methyltransf_2	PF00891	115 - 214	5.1e-25	O-methyltransferase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001688)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g17220 FvH4_6g45070
malus_domestica	MD09G1089200.v1.1 MD09G1089800.v1.1 MD09G1090100.v1.1 MD09G1090200.v1.1 MD17G1079200.v1.1
prunus_persica	Prupe.3G235300_v2.0.a1 Prupe.3G235500_v2.0.a1
pyrus_communis	pycom09g01490 pycom17g07830
rosa_chinensis	RchiOBHm_Chr1g0324661 RchiOBHm_Chr2g0139131 RchiOBHm_Chr4g0427641 RchiOBHm_Chr4g0427651
rosa_laevigata	RLG00000007219 RLG00000007220 RLG00000019790 RLG00000021346 RLG00000021347
rosa_multiflora	Rmu_co8132516.1_g000001 Rmu_sc0001803.1_g000030 Rmu_sc0003399.1_g000006 Rmu_sc0009627.1_g000012 Rmu_sc0009627.1_g000013
rosa_roxburghii	Rroxscaffold_2G00105640 Rroxscaffold_5G00369270 Rroxscaffold_5G00369300
rosa_rugosa	Rorug02G0354700 Rorug02G0498000 Rorug04G0219000
rosa_samantha	Rh1CG065100 Rh1DG069400 Rh1DG070200 Rh2AG405100 Rh2BG415000 Rh2CG391300 Rh2DG424900 Rh4AG275500 Rh4BG281400 Rh4BG281500 Rh4CG296800 Rh4CG296900 Rh4DG278800 Rh4DG278900
rosa_wichuraiana	Rw1G005480 Rw2G033080 Rw4G023890 Rw4G023900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	633
AccB1I	GGYRCC	1 cut(s)	89
AccB7I	CCANNNNNTGG	1 cut(s)	227
AciI	CCGC	2 cut(s)	193, 629
AclWI	GGATC	4 cut(s)	544, 658, 670, 683
AfaI	GTAC	1 cut(s)	475
AfiI	CCNNNNNNNGG	4 cut(s)	86, 227, 231, 245
AgsI	TTSAA	3 cut(s)	445, 457, 616
AhdI	GACNNNNNGTC	2 cut(s)	188, 424
AluBI	AGCT	4 cut(s)	46, 289, 299, 664
AluI	AGCT	4 cut(s)	46, 289, 299, 664
Alw26I	GTCTC	2 cut(s)	175, 432
AlwI	GGATC	4 cut(s)	544, 658, 670, 683
AlwNI	CAGNNNCTG	1 cut(s)	578
AoxI	GGCC	4 cut(s)	24, 396, 468, 698
AspLEI	GCGC	1 cut(s)	572
AspS9I	GGNCC	4 cut(s)	377, 397, 698, 746
AsuHPI	GGTGA	2 cut(s)	209, 314
AvaII	GGWCC	2 cut(s)	377, 746
BamHI	GGATCC	1 cut(s)	675
BanI	GGYRCC	1 cut(s)	89
BccI	CCATC	6 cut(s)	221, 229, 261, 307, 388, 455
BceAI	ACGGC	3 cut(s)	492, 685, 735
BclI	TGATCA	1 cut(s)	111
BcoDI	GTCTC	2 cut(s)	175, 432
BfaI	CTAG	3 cut(s)	152, 296, 480
BfuAI	ACCTGC	1 cut(s)	633
BglI	GCCNNNNNGGC	1 cut(s)	476
BisI	GCNGC	1 cut(s)	629
BlpI	GCTNAGC	2 cut(s)	285, 290
BlsI	GCNGC	1 cut(s)	630
Bme18I	GGWCC	2 cut(s)	377, 746
BmeRI	GACNNNNNGTC	2 cut(s)	188, 424
BmgT120I	GGNCC	4 cut(s)	377, 397, 698, 746
BmiI	GGNNCC	5 cut(s)	91, 237, 339, 677, 748
BmsI	GCATC	3 cut(s)	183, 271, 372
BplI	GAGNNNNNCTC	2 cut(s)	283, 315
BpmI	CTGGAG	1 cut(s)	585
Bpu10I	CCTNAGC	1 cut(s)	660
Bpu1102I	GCTNAGC	2 cut(s)	285, 290
BpuEI	CTTGAG	1 cut(s)	428
BsaBI	GATNNNNATC	2 cut(s)	649, 711
BsaJI	CCNNGG	3 cut(s)	21, 341, 400
BsaXI	ACNNNNNCTCC	2 cut(s)	558, 588
Bsc4I	CCNNNNNNNGG	4 cut(s)	86, 227, 231, 245
Bse1I	ACTGG	1 cut(s)	568
Bse8I	GATNNNNATC	2 cut(s)	649, 711
BseDI	CCNNGG	3 cut(s)	21, 341, 400
BseGI	GGATG	3 cut(s)	221, 553, 712
BseJI	GATNNNNATC	2 cut(s)	649, 711
BseLI	CCNNNNNNNGG	4 cut(s)	86, 227, 231, 245
BseMII	CTCAG	4 cut(s)	276, 281, 570, 651
BseNI	ACTGG	1 cut(s)	568
BseRI	GAGGAG	1 cut(s)	387
BshFI	GGCC	4 cut(s)	26, 398, 470, 700
BshNI	GGYRCC	1 cut(s)	89
BsiSI	CCGG	1 cut(s)	642
BslFI	GGGAC	3 cut(s)	106, 431, 574
BslI	CCNNNNNNNGG	4 cut(s)	86, 227, 231, 245
BsmAI	GTCTC	2 cut(s)	175, 432
BsmBI	CGTCTC	1 cut(s)	432
BsmFI	GGGAC	3 cut(s)	106, 431, 574
BsnI	GGCC	4 cut(s)	26, 398, 470, 700
Bsp143I	GATC	4 cut(s)	111, 536, 650, 675
Bsp1720I	GCTNAGC	2 cut(s)	285, 290
Bsp19I	CCATGG	2 cut(s)	21, 400
BspACI	CCGC	2 cut(s)	193, 629
BspANI	GGCC	4 cut(s)	26, 398, 470, 700
BspCNI	CTCAG	4 cut(s)	277, 282, 571, 652
BspHI	TCATGA	1 cut(s)	177
BspLI	GGNNCC	5 cut(s)	91, 237, 339, 677, 748
BspMI	ACCTGC	1 cut(s)	633
BspPI	GGATC	4 cut(s)	544, 658, 670, 683
BspT107I	GGYRCC	1 cut(s)	89
BsrI	ACTGG	1 cut(s)	568
BssECI	CCNNGG	3 cut(s)	21, 341, 400
BssMI	GATC	4 cut(s)	111, 536, 650, 675
BssT1I	CCWWGG	3 cut(s)	21, 341, 400
Bst4CI	ACNGT	1 cut(s)	211
BstDEI	CTNAG	4 cut(s)	285, 290, 579, 660
BstDSI	CCRYGG	2 cut(s)	21, 400
BstF5I	GGATG	3 cut(s)	221, 553, 712
BstHHI	GCGC	1 cut(s)	572
BstKTI	GATC	4 cut(s)	114, 539, 653, 678
BstMAI	GTCTC	2 cut(s)	175, 432
BstMBI	GATC	4 cut(s)	111, 536, 650, 675
BstMWI	GCNNNNNNNGC	2 cut(s)	171, 476
BstNSI	RCATGY	2 cut(s)	165, 635
BstX2I	RGATCY	1 cut(s)	675
BstYI	RGATCY	1 cut(s)	675
BsuRI	GGCC	4 cut(s)	26, 398, 470, 700
BtgI	CCRYGG	2 cut(s)	21, 400
BtsCI	GGATG	3 cut(s)	221, 553, 712
BtsI	GCAGTG	1 cut(s)	579
BtsIMutI	CAGTG	2 cut(s)	207, 579
BveI	ACCTGC	1 cut(s)	633
CaiI	CAGNNNCTG	1 cut(s)	578
CciI	TCATGA	1 cut(s)	177
CfoI	GCGC	1 cut(s)	572
Cfr13I	GGNCC	4 cut(s)	377, 397, 698, 746
CseI	GACGC	1 cut(s)	414
Csp6I	GTAC	1 cut(s)	474
CviAII	CATG	9 cut(s)	22, 135, 162, 178, 278, 381, 401, 518, 632
CviQI	GTAC	1 cut(s)	474
DdeI	CTNAG	4 cut(s)	285, 290, 579, 660
DpnI	GATC	4 cut(s)	113, 538, 652, 677
DpnII	GATC	4 cut(s)	111, 536, 650, 675
DraI	TTTAAA	1 cut(s)	741
DriI	GACNNNNNGTC	2 cut(s)	188, 424
Eam1105I	GACNNNNNGTC	2 cut(s)	188, 424
EciI	GGCGGA	1 cut(s)	182
Eco130I	CCWWGG	3 cut(s)	21, 341, 400
Eco32I	GATATC	1 cut(s)	61
Eco47I	GGWCC	2 cut(s)	377, 746
EcoO109I	RGGNCCY	1 cut(s)	746
EcoRV	GATATC	1 cut(s)	61
EcoT14I	CCWWGG	3 cut(s)	21, 341, 400
EcoT22I	ATGCAT	2 cut(s)	140, 365
ErhI	CCWWGG	3 cut(s)	21, 341, 400
Esp3I	CGTCTC	1 cut(s)	432
FaeI	CATG	9 cut(s)	25, 138, 165, 181, 281, 384, 404, 521, 635
FaqI	GGGAC	3 cut(s)	106, 431, 574
FatI	CATG	9 cut(s)	21, 134, 161, 177, 277, 380, 400, 517, 631
FbaI	TGATCA	1 cut(s)	111
Fnu4HI	GCNGC	1 cut(s)	629
FokI	GGATG	3 cut(s)	208, 560, 699
Fsp4HI	GCNGC	1 cut(s)	629
FspBI	CTAG	3 cut(s)	152, 296, 480
GlaI	GCGC	1 cut(s)	571
GluI	GCNGC	1 cut(s)	629
GsuI	CTGGAG	1 cut(s)	585
HaeIII	GGCC	4 cut(s)	26, 398, 470, 700
HapII	CCGG	1 cut(s)	642
HgaI	GACGC	1 cut(s)	414
HhaI	GCGC	1 cut(s)	572
Hin1II	CATG	9 cut(s)	25, 138, 165, 181, 281, 384, 404, 521, 635
Hin6I	GCGC	1 cut(s)	570
HinP1I	GCGC	1 cut(s)	570
HincII	GTYRAC	1 cut(s)	252
HindII	GTYRAC	1 cut(s)	252
HinfI	GANTC	2 cut(s)	17, 319
HpaII	CCGG	1 cut(s)	642
HphI	GGTGA	2 cut(s)	209, 314
Hpy166II	GTNNAC	1 cut(s)	252
Hpy188I	TCNGA	2 cut(s)	226, 684
Hpy188III	TCNNGA	4 cut(s)	178, 264, 437, 659
Hpy8I	GTNNAC	1 cut(s)	252
HpyAV	CCTTC	2 cut(s)	487, 689
HpyCH4III	ACNGT	1 cut(s)	211
HpyCH4V	TGCA	2 cut(s)	138, 363
HpyF10VI	GCNNNNNNNGC	2 cut(s)	171, 476
HpyF3I	CTNAG	4 cut(s)	285, 290, 579, 660
Hsp92II	CATG	9 cut(s)	25, 138, 165, 181, 281, 384, 404, 521, 635
HspAI	GCGC	1 cut(s)	570
Ksp22I	TGATCA	1 cut(s)	111
Kzo9I	GATC	4 cut(s)	111, 536, 650, 675
LmnI	GCTCC	2 cut(s)	43, 304
LpnPI	CCDG	8 cut(s)	72, 450, 484, 492, 549, 638, 655, 672
LweI	GCATC	3 cut(s)	183, 271, 372
MaeI	CTAG	3 cut(s)	152, 296, 480
MalI	GATC	4 cut(s)	113, 538, 652, 677
MboI	GATC	4 cut(s)	111, 536, 650, 675
MflI	RGATCY	1 cut(s)	675
MluCI	AATT	4 cut(s)	125, 449, 616, 726
MmeI	TCCRAC	2 cut(s)	684, 740
MnlI	CCTC	9 cut(s)	103, 142, 157, 176, 249, 365, 368, 560, 666
Mph1103I	ATGCAT	2 cut(s)	140, 365
MseI	TTAA	4 cut(s)	29, 390, 734, 740
MslI	CAYNNNNRTG	1 cut(s)	265
MspI	CCGG	1 cut(s)	642
MwoI	GCNNNNNNNGC	2 cut(s)	171, 476
NcoI	CCATGG	2 cut(s)	21, 400
NdeII	GATC	4 cut(s)	111, 536, 650, 675
NlaIII	CATG	9 cut(s)	25, 138, 165, 181, 281, 384, 404, 521, 635
NlaIV	GGNNCC	5 cut(s)	91, 237, 339, 677, 748
NsiI	ATGCAT	2 cut(s)	140, 365
NspI	RCATGY	2 cut(s)	165, 635
PagI	TCATGA	1 cut(s)	177
PfeI	GAWTC	2 cut(s)	17, 319
PflMI	CCANNNNNTGG	1 cut(s)	227
PkrI	GCNGC	1 cut(s)	630
PpuMI	RGGWCCY	1 cut(s)	746
Psp5II	RGGWCCY	1 cut(s)	746
PspN4I	GGNNCC	5 cut(s)	91, 237, 339, 677, 748
PspPI	GGNCC	4 cut(s)	377, 397, 698, 746
PspPPI	RGGWCCY	1 cut(s)	746
PstNI	CAGNNNCTG	1 cut(s)	578
PsuI	RGATCY	1 cut(s)	675
RsaI	GTAC	1 cut(s)	475
RsaNI	GTAC	1 cut(s)	474
RseI	CAYNNNNRTG	1 cut(s)	265
SaqAI	TTAA	4 cut(s)	29, 390, 734, 740
SatI	GCNGC	1 cut(s)	629
Sau3AI	GATC	4 cut(s)	111, 536, 650, 675
Sau96I	GGNCC	4 cut(s)	377, 397, 698, 746
SfaNI	GCATC	3 cut(s)	183, 271, 372
SinI	GGWCC	2 cut(s)	377, 746
SmiMI	CAYNNNNRTG	1 cut(s)	265
SmlI	CTYRAG	1 cut(s)	407
SmoI	CTYRAG	1 cut(s)	407
Sse9I	AATT	4 cut(s)	125, 449, 616, 726
SsiI	CCGC	2 cut(s)	193, 629
SspMI	CTAG	3 cut(s)	152, 296, 480
StyI	CCWWGG	3 cut(s)	21, 341, 400
TaaI	ACNGT	1 cut(s)	211
TasI	AATT	4 cut(s)	125, 449, 616, 726
TauI	GCSGC	1 cut(s)	631
TfiI	GAWTC	2 cut(s)	17, 319
Tru1I	TTAA	4 cut(s)	29, 390, 734, 740
Tru9I	TTAA	4 cut(s)	29, 390, 734, 740
TscAI	CASTG	2 cut(s)	214, 579
TspDTI	ATGAA	4 cut(s)	203, 506, 528, 701
TspRI	CASTG	2 cut(s)	214, 579
Van91I	CCANNNNNTGG	1 cut(s)	227
VpaK11BI	GGWCC	2 cut(s)	377, 746
XceI	RCATGY	2 cut(s)	165, 635
XspI	CTAG	3 cut(s)	152, 296, 480
Zsp2I	ATGCAT	2 cut(s)	140, 365

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.