RchiOBHm_Chr1g0324661
ERF Family

Belongs to the class I-like SAM-binding methyltransferase superfamily. Cation-independent O- methyltransferase family

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
Physical Location & Seq
Reverse (-)
12477149 .. 12478414
1266 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ55449

Sequence Viewer

Length: 1080 bp
ATGGAAGCAGTTACAGAATTGGATGAAGCATCTCTAAGAGGCCAAGCAAATGTATGGAAGTACATGCTCGGCTTTGCAGATTCCATGGCTTTAAAATCTGCTGTGGAGCTCCGGATACCAGATATCATACACTCTGATGGTCATGCAATGACTTTGTCTGAAATAGCCCGCTCCTTCGACTCTGCATCACCCTGTCCAGACATCACATGCCTCTCTCGCATCATGCGGTTGCTAGTTCGCAGGAACATCTTCACTGCACAACCTGACGGTGGAGATTCAGGAGAAACCCTCTACGGGTTGACTCACTCATCTAGATGGCTTTTACATGACTCGGAGTTCACTCTAGCTCTGATGGTTCTCATGGAGACAAATCCTACTCTAATGGAGCCATGGCACTATTTCAGCCAATGCGTCAAGCAAGGCGCTCCATGCGCCTTTGAGAAAGCGCATGGCCGCGACATTTGGCAATTCTTCACCGAAAAACCCGAGTTCAACCGATTGTTCAACGATAGCATGACATGCACTGCTAAGATTACAATGAAAGCGATACTCACGGGATATAAGGGTGGGTTTGATAACGTGGCAACACTGGTGGATGTTGGTGGTGGGACTGGAAGCGTAGTGGCGGAGATTGTGAAGTTGTATCCCAGCATTAGGGGCATCAACTTTGATCTACCACATGTAGTTGCAACAGCGCCGGTGTACCATGGGGTGTCAAATGTTGGAGGTGACATGTTTGATGACGGCAGTATTCCAAACACTGATGCAATTTTCATGATGAGGATTATGCACGGCTGGAGCGACATTGATTGCGTCAAGATATTGAAAAACTGTCGAAAGGCGATACCAGAGAGAAGTGGCAAGGTGATTATTGTGGACATTGTTCTAGAGCCAAATGGTGATGGCATGTTCGACGACACAGGCTTGGTGTTTGATATGGTAATGATTGCACACAGCTCCGGTGGAAAGGAGAGGACTGAGAGTGAATGGAAGAAGATGTTGGAACAAGGAGGCTTCCCTCGTTACAAAATCATCAAAATTCCAGCTTTATCGTCCATTATTGAGGCCTACCCTGTGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

359

Amino Acids

39.72

Weight (kDa)

5.4

Isoelectric Point (pI)

39.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Dimerisation PF08100 19 - 109 5.3e-20 O-methyltransferase dimerisation domain
Methyltransf_2 PF00891 131 - 339 1.1e-58 O-methyltransferase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 171
AccII CGCG 1 cut(s) 456
AccIII TCCGGA 1 cut(s) 111
AciI CCGC 4 cut(s) 169, 226, 454, 626
AcoI YGGCCR 1 cut(s) 451
AcsI RAATTY 1 cut(s) 1038
AfaI GTAC 2 cut(s) 62, 704
AfiI CCNNNNNNNGG 3 cut(s) 269, 294, 654
AflIII ACRYGT 2 cut(s) 679, 732
AgsI TTSAA 3 cut(s) 493, 505, 826
AjuI GAANNNNNNNTTGG 2 cut(s) 983, 1015
AluBI AGCT 4 cut(s) 109, 347, 957, 1046
AluI AGCT 4 cut(s) 109, 347, 957, 1046
Alw21I GWGCWC 1 cut(s) 111
Alw26I GTCTC 1 cut(s) 359
Ama87I CYCGRG 1 cut(s) 485
Aor13HI TCCGGA 1 cut(s) 111
AoxI GGCC 3 cut(s) 40, 451, 1065
ApoI RAATTY 1 cut(s) 1038
Asp700I GAANNNNTTC 1 cut(s) 248
AspLEI GCGC 4 cut(s) 425, 434, 448, 697
AsuHPI GGTGA 5 cut(s) 180, 466, 740, 877, 911
AvaI CYCGRG 1 cut(s) 485
BanII GRGCYC 1 cut(s) 111
Bbv12I GWGCWC 1 cut(s) 111
BccI CCATC 4 cut(s) 131, 309, 346, 896
BceAI ACGGC 2 cut(s) 760, 808
BciVI GTATCC 2 cut(s) 108, 654
BcoDI GTCTC 1 cut(s) 359
BfaI CTAG 4 cut(s) 233, 312, 344, 887
BfoI RGCGCY 2 cut(s) 426, 698
BfuI GTATCC 2 cut(s) 108, 654
BisI GCNGC 1 cut(s) 454
BlsI GCNGC 1 cut(s) 455
BmeT110I CYCGRG 1 cut(s) 485
BmiI GGNNCC 1 cut(s) 387
BmsI GCATC 5 cut(s) 38, 194, 228, 669, 754
BplI GAGNNNNNCTC 2 cut(s) 273, 305
BpmI CTGGAG 1 cut(s) 817
BsaJI CCNNGG 3 cut(s) 84, 389, 706
BsaWI WCCGGW 2 cut(s) 111, 959
Bsc4I CCNNNNNNNGG 3 cut(s) 269, 294, 654
Bse118I RCCGGY 1 cut(s) 697
Bse1I ACTGG 2 cut(s) 594, 616
Bse3DI GCAATG 1 cut(s) 153
BseAI TCCGGA 1 cut(s) 111
BseDI CCNNGG 3 cut(s) 84, 389, 706
BseGI GGATG 2 cut(s) 28, 601
BseLI CCNNNNNNNGG 3 cut(s) 269, 294, 654
BseMI GCAATG 1 cut(s) 153
BseMII CTCAG 1 cut(s) 969
BseNI ACTGG 2 cut(s) 594, 616
BseYI CCCAGC 1 cut(s) 647
BsgI GTGCAG 1 cut(s) 240
Bsh1236I CGCG 1 cut(s) 456
BshFI GGCC 3 cut(s) 42, 453, 1067
BsiHKAI GWGCWC 1 cut(s) 111
BsiHKCI CYCGRG 1 cut(s) 485
BsiSI CCGG 3 cut(s) 112, 698, 960
BslFI GGGAC 1 cut(s) 622
BslI CCNNNNNNNGG 3 cut(s) 269, 294, 654
BsmAI GTCTC 1 cut(s) 359
BsmFI GGGAC 1 cut(s) 622
BsnI GGCC 3 cut(s) 42, 453, 1067
BsoBI CYCGRG 1 cut(s) 485
Bsp1286I GDGCHC 1 cut(s) 111
Bsp13I TCCGGA 1 cut(s) 111
Bsp143I GATC 1 cut(s) 670
Bsp19I CCATGG 3 cut(s) 84, 389, 706
BspACI CCGC 4 cut(s) 169, 226, 454, 626
BspANI GGCC 3 cut(s) 42, 453, 1067
BspCNI CTCAG 1 cut(s) 970
BspEI TCCGGA 1 cut(s) 111
BspFNI CGCG 1 cut(s) 456
BspHI TCATGA 1 cut(s) 774
BspLI GGNNCC 1 cut(s) 387
BsrBI CCGCTC 1 cut(s) 171
BsrDI GCAATG 1 cut(s) 153
BsrFI RCCGGY 1 cut(s) 697
BsrI ACTGG 2 cut(s) 594, 616
BssAI RCCGGY 1 cut(s) 697
BssECI CCNNGG 3 cut(s) 84, 389, 706
BssMI GATC 1 cut(s) 670
BssT1I CCWWGG 3 cut(s) 84, 389, 706
Bst4CI ACNGT 2 cut(s) 269, 833
BstAPI GCANNNNNTGC 1 cut(s) 519
BstC8I GCNNGC 1 cut(s) 169
BstDEI CTNAG 3 cut(s) 35, 528, 978
BstDSI CCRYGG 3 cut(s) 84, 389, 706
BstF5I GGATG 2 cut(s) 28, 601
BstFNI CGCG 1 cut(s) 456
BstH2I RGCGCY 2 cut(s) 426, 698
BstHHI GCGC 4 cut(s) 425, 434, 448, 697
BstKTI GATC 1 cut(s) 673
BstMAI GTCTC 1 cut(s) 359
BstMBI GATC 1 cut(s) 670
BstMWI GCNNNNNNNGC 5 cut(s) 216, 429, 431, 519, 657
BstNSI RCATGY 6 cut(s) 67, 210, 522, 683, 736, 910
BstUI CGCG 1 cut(s) 456
BsuI GTATCC 2 cut(s) 108, 654
BsuRI GGCC 3 cut(s) 42, 453, 1067
BtgI CCRYGG 3 cut(s) 84, 389, 706
BtsCI GGATG 2 cut(s) 28, 601
BtsI GCAGTG 2 cut(s) 252, 522
BtsIMutI CAGTG 4 cut(s) 252, 522, 587, 759
Cac8I GCNNGC 1 cut(s) 169
CciI TCATGA 1 cut(s) 774
CfoI GCGC 4 cut(s) 425, 434, 448, 697
Cfr10I RCCGGY 1 cut(s) 697
CseI GACGC 2 cut(s) 400, 802
Csp6I GTAC 2 cut(s) 61, 703
CspCI CAANNNNNGTGG 2 cut(s) 573, 608
CviQI GTAC 2 cut(s) 61, 703
DdeI CTNAG 3 cut(s) 35, 528, 978
DpnI GATC 1 cut(s) 672
DpnII GATC 1 cut(s) 670
DraI TTTAAA 1 cut(s) 93
EaeI YGGCCR 1 cut(s) 451
EciI GGCGGA 1 cut(s) 641
Ecl136II GAGCTC 1 cut(s) 109
Eco130I CCWWGG 3 cut(s) 84, 389, 706
Eco147I AGGCCT 1 cut(s) 1067
Eco24I GRGCYC 1 cut(s) 111
Eco32I GATATC 1 cut(s) 124
Eco53kI GAGCTC 1 cut(s) 109
Eco88I CYCGRG 1 cut(s) 485
EcoICRI GAGCTC 1 cut(s) 109
EcoRV GATATC 1 cut(s) 124
EcoT14I CCWWGG 3 cut(s) 84, 389, 706
EcoT38I GRGCYC 1 cut(s) 111
ErhI CCWWGG 3 cut(s) 84, 389, 706
FaqI GGGAC 1 cut(s) 622
FauI CCCGC 1 cut(s) 176
Fnu4HI GCNGC 1 cut(s) 454
FokI GGATG 2 cut(s) 35, 608
FriOI GRGCYC 1 cut(s) 111
Fsp4HI GCNGC 1 cut(s) 454
FspBI CTAG 4 cut(s) 233, 312, 344, 887
GlaI GCGC 4 cut(s) 424, 433, 447, 696
GluI GCNGC 1 cut(s) 454
GsaI CCCAGC 1 cut(s) 651
GsuI CTGGAG 1 cut(s) 817
HaeII RGCGCY 2 cut(s) 426, 698
HaeIII GGCC 3 cut(s) 42, 453, 1067
HapII CCGG 3 cut(s) 112, 698, 960
HgaI GACGC 2 cut(s) 400, 802
HhaI GCGC 4 cut(s) 425, 434, 448, 697
Hin6I GCGC 4 cut(s) 423, 432, 446, 695
HinP1I GCGC 4 cut(s) 423, 432, 446, 695
HincII GTYRAC 1 cut(s) 300
HindII GTYRAC 1 cut(s) 300
HinfI GANTC 5 cut(s) 80, 179, 275, 301, 329
HpaII CCGG 3 cut(s) 112, 698, 960
HphI GGTGA 5 cut(s) 180, 466, 740, 877, 911
Hpy166II GTNNAC 4 cut(s) 300, 339, 703, 877
Hpy188I TCNGA 4 cut(s) 136, 160, 334, 351
Hpy188III TCNNGA 7 cut(s) 112, 197, 279, 312, 775, 817, 887
Hpy8I GTNNAC 4 cut(s) 300, 339, 703, 877
Hpy99I CGWCG 1 cut(s) 917
HpyAV CCTTC 1 cut(s) 184
HpyCH4III ACNGT 2 cut(s) 269, 833
HpyCH4IV ACGT 1 cut(s) 579
HpyCH4V TGCA 9 cut(s) 77, 146, 185, 257, 522, 689, 767, 790, 950
HpyF10VI GCNNNNNNNGC 5 cut(s) 216, 429, 431, 519, 657
HpyF3I CTNAG 3 cut(s) 35, 528, 978
HpySE526I ACGT 1 cut(s) 579
HspAI GCGC 4 cut(s) 423, 432, 446, 695
Kpn2I TCCGGA 1 cut(s) 111
Kzo9I GATC 1 cut(s) 670
LmnI GCTCC 7 cut(s) 106, 114, 176, 385, 430, 798, 962
LweI GCATC 5 cut(s) 38, 194, 228, 669, 754
MaeI CTAG 4 cut(s) 233, 312, 344, 887
MaeII ACGT 1 cut(s) 579
MaeIII GTNAC 3 cut(s) 10, 728, 1022
MalI GATC 1 cut(s) 672
MbiI CCGCTC 1 cut(s) 171
MboI GATC 1 cut(s) 670
MboII GAAGA 4 cut(s) 241, 463, 1003, 1006
MhlI GDGCHC 1 cut(s) 111
MluCI AATT 4 cut(s) 17, 467, 768, 1038
MlyI GAGTC 3 cut(s) 173, 295, 323
MmeI TCCRAC 2 cut(s) 703, 981
MnlI CCTC 9 cut(s) 32, 221, 299, 719, 774, 966, 1004, 1029, 1057
MroI TCCGGA 1 cut(s) 111
MroXI GAANNNNTTC 1 cut(s) 248
MseI TTAA 1 cut(s) 92
MslI CAYNNNNRTG 2 cut(s) 135, 313
MspI CCGG 3 cut(s) 112, 698, 960
MvnI CGCG 1 cut(s) 456
MwoI GCNNNNNNNGC 5 cut(s) 216, 429, 431, 519, 657
NcoI CCATGG 3 cut(s) 84, 389, 706
NdeII GATC 1 cut(s) 670
NlaIV GGNNCC 1 cut(s) 387
NmeAIII GCCGAG 1 cut(s) 48
NmuCI GTSAC 1 cut(s) 728
NspI RCATGY 6 cut(s) 67, 210, 522, 683, 736, 910
PagI TCATGA 1 cut(s) 774
PceI AGGCCT 1 cut(s) 1067
PciI ACATGT 2 cut(s) 679, 732
PcsI WCGNNNNNNNCGW 1 cut(s) 798
PdmI GAANNNNTTC 1 cut(s) 248
PfeI GAWTC 2 cut(s) 80, 275
PflFI GACNNNGTC 1 cut(s) 154
PkrI GCNGC 1 cut(s) 455
PleI GAGTC 3 cut(s) 173, 295, 323
PpsI GAGTC 3 cut(s) 173, 295, 323
PscI ACATGT 2 cut(s) 679, 732
Psp124BI GAGCTC 1 cut(s) 111
PspFI CCCAGC 1 cut(s) 647
PspN4I GGNNCC 1 cut(s) 387
PsyI GACNNNGTC 1 cut(s) 154
RsaI GTAC 2 cut(s) 62, 704
RsaNI GTAC 2 cut(s) 61, 703
RseI CAYNNNNRTG 2 cut(s) 135, 313
SacI GAGCTC 1 cut(s) 111
SaqAI TTAA 1 cut(s) 92
SatI GCNGC 1 cut(s) 454
Sau3AI GATC 1 cut(s) 670
SchI GAGTC 3 cut(s) 173, 295, 323
SduI GDGCHC 1 cut(s) 111
SetI ASST 8 cut(s) 111, 265, 349, 582, 730, 867, 959, 1048
SfaNI GCATC 5 cut(s) 38, 194, 228, 669, 754
SgrAI CRCCGGYG 1 cut(s) 697
SmiMI CAYNNNNRTG 2 cut(s) 135, 313
Sse9I AATT 4 cut(s) 17, 467, 768, 1038
SseBI AGGCCT 1 cut(s) 1067
SsiI CCGC 4 cut(s) 169, 226, 454, 626
SspMI CTAG 4 cut(s) 233, 312, 344, 887
SstI GAGCTC 1 cut(s) 111
StuI AGGCCT 1 cut(s) 1067
StyI CCWWGG 3 cut(s) 84, 389, 706
TaaI ACNGT 2 cut(s) 269, 833
TaiI ACGT 1 cut(s) 582
TaqI TCGA 3 cut(s) 177, 835, 912
TasI AATT 4 cut(s) 17, 467, 768, 1038
TatI WGTACW 1 cut(s) 60
TauI GCSGC 1 cut(s) 456
TfiI GAWTC 2 cut(s) 80, 275
Tru1I TTAA 1 cut(s) 92
Tru9I TTAA 1 cut(s) 92
TscAI CASTG 4 cut(s) 259, 529, 594, 766
TseFI GTSAC 1 cut(s) 728
Tsp45I GTSAC 1 cut(s) 728
TspDTI ATGAA 3 cut(s) 39, 554, 763
TspRI CASTG 4 cut(s) 259, 529, 594, 766
Tth111I GACNNNGTC 1 cut(s) 154
XapI RAATTY 1 cut(s) 1038
XbaI TCTAGA 2 cut(s) 311, 886
XceI RCATGY 6 cut(s) 67, 210, 522, 683, 736, 910
XmnI GAANNNNTTC 1 cut(s) 248
XspI CTAG 4 cut(s) 233, 312, 344, 887
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.