Rh2BG624500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0026269
Physical Location & Seq
Reverse (-)
84636614 .. 84637528
915 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG624500.1

Sequence Viewer

Length: 411 bp
ATGAGTCCATCTTGCTCGCAGCCAATGACCTGTTGTCCAGCGACATCATCTATCCCTTCACGCCCTTACCGGTTCCTCTCAAAACCAAACCTTCCCCTCTTCAACTGCAGCTCCCAACCTCACCTCCTCCGTCTCGGTCTCCGCCGCCTAGTGGCGGCTCTTCCAACAACAAGTGGGTCTTCATCGGCGTTGGAATCGGAGCTGGTTGTCTCCTCCTCCTCACCGCCCTCGCCGCCTTCCTCTTCTTATCAAAACGGCGCCGCCGTCAGCTCTGCCAATCTCCCAAACCCAACTTGCGTCCAAAGAGCTCCGGTGACTACACGCCGACCTCTCTGCTACCCACCACCGCCTCCGACGACACAACGAAATCGTGGTCTTCCAGCGGGCTTAAAATTGCGGTGGAGTCCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

136

Amino Acids

14.43

Weight (kDa)

10.51

Isoelectric Point (pI)

92.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0026269)

Species Orthologous Gene IDs
rosa_samantha Rh2BG624500 Rh2DG635300 Rh6BG465700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 257
AciI CCGC 9 cut(s) 142, 145, 155, 224, 233, 261, 347, 383, 397
AcyI GRCGYC 1 cut(s) 258
AfiI CCNNNNNNNGG 2 cut(s) 151, 154
AgeI ACCGGT 1 cut(s) 69
AgsI TTSAA 1 cut(s) 103
AhdI GACNNNNNGTC 1 cut(s) 33
AluBI AGCT 4 cut(s) 111, 202, 270, 308
AluI AGCT 4 cut(s) 111, 202, 270, 308
Alw21I GWGCWC 1 cut(s) 310
Alw26I GTCTC 3 cut(s) 137, 143, 214
ApeKI GCWGC 2 cut(s) 19, 108
ArsI GACNNNNNNTTYG 2 cut(s) 358, 390
AsiGI ACCGGT 1 cut(s) 69
AspLEI GCGC 1 cut(s) 260
AsuHPI GGTGA 3 cut(s) 113, 213, 325
BanI GGYRCC 1 cut(s) 257
BanII GRGCYC 1 cut(s) 310
BbsI GAAGAC 2 cut(s) 171, 368
Bbv12I GWGCWC 1 cut(s) 310
BbvI GCAGC 2 cut(s) 31, 120
BccI CCATC 1 cut(s) 16
BceAI ACGGC 2 cut(s) 248, 271
BcgI CGANNNNNNTGC 2 cut(s) 315, 349
BcoDI GTCTC 3 cut(s) 137, 143, 214
BfaI CTAG 1 cut(s) 149
BfmI CTRYAG 1 cut(s) 106
BfoI RGCGCY 1 cut(s) 261
BisI GCNGC 6 cut(s) 20, 109, 145, 156, 233, 261
BlsI GCNGC 6 cut(s) 21, 110, 146, 157, 234, 262
BmeRI GACNNNNNGTC 1 cut(s) 33
BmiI GGNNCC 2 cut(s) 74, 259
BpiI GAAGAC 2 cut(s) 171, 368
BsaHI GRCGYC 1 cut(s) 258
BsaI GGTCTC 1 cut(s) 143
BsaWI WCCGGW 2 cut(s) 69, 310
BsaXI ACNNNNNCTCC 4 cut(s) 95, 108, 125, 138
Bsc4I CCNNNNNNNGG 2 cut(s) 151, 154
Bse118I RCCGGY 1 cut(s) 69
BseLI CCNNNNNNNGG 2 cut(s) 151, 154
BseRI GAGGAG 4 cut(s) 116, 202, 205, 208
BseXI GCAGC 2 cut(s) 31, 120
BshNI GGYRCC 1 cut(s) 257
BshTI ACCGGT 1 cut(s) 69
BsiHKAI GWGCWC 1 cut(s) 310
BsiSI CCGG 2 cut(s) 70, 311
BslI CCNNNNNNNGG 2 cut(s) 151, 154
BsmAI GTCTC 3 cut(s) 137, 143, 214
BsmBI CGTCTC 1 cut(s) 137
Bso31I GGTCTC 1 cut(s) 143
Bsp1286I GDGCHC 1 cut(s) 310
BspACI CCGC 9 cut(s) 142, 145, 155, 224, 233, 261, 347, 383, 397
BspLI GGNNCC 2 cut(s) 74, 259
BspMAI CTGCAG 1 cut(s) 110
BspQI GCTCTTC 1 cut(s) 165
BspT107I GGYRCC 1 cut(s) 257
BspTNI GGTCTC 1 cut(s) 143
BsrFI RCCGGY 1 cut(s) 69
BssAI RCCGGY 1 cut(s) 69
BssNI GRCGYC 1 cut(s) 258
Bst6I CTCTTC 3 cut(s) 104, 165, 247
BstACI GRCGYC 1 cut(s) 258
BstC8I GCNNGC 2 cut(s) 17, 385
BstH2I RGCGCY 1 cut(s) 261
BstHHI GCGC 1 cut(s) 260
BstMAI GTCTC 3 cut(s) 137, 143, 214
BstMWI GCNNNNNNNGC 1 cut(s) 232
BstSFI CTRYAG 1 cut(s) 106
BstV1I GCAGC 2 cut(s) 31, 120
BstV2I GAAGAC 2 cut(s) 171, 368
Cac8I GCNNGC 2 cut(s) 17, 385
CfoI GCGC 1 cut(s) 260
Cfr10I RCCGGY 1 cut(s) 69
CseI GACGC 1 cut(s) 286
CspAI ACCGGT 1 cut(s) 69
CviJI RGCY 7 cut(s) 22, 111, 158, 202, 270, 308, 387
CviKI_1 RGCY 7 cut(s) 22, 111, 158, 202, 270, 308, 387
DinI GGCGCC 1 cut(s) 259
DriI GACNNNNNGTC 1 cut(s) 33
Eam1104I CTCTTC 3 cut(s) 104, 165, 247
Eam1105I GACNNNNNGTC 1 cut(s) 33
EarI CTCTTC 3 cut(s) 104, 165, 247
EciI GGCGGA 1 cut(s) 131
Ecl136II GAGCTC 1 cut(s) 308
Eco24I GRGCYC 1 cut(s) 310
Eco31I GGTCTC 1 cut(s) 143
Eco53kI GAGCTC 1 cut(s) 308
EcoICRI GAGCTC 1 cut(s) 308
EcoT38I GRGCYC 1 cut(s) 310
EgeI GGCGCC 1 cut(s) 259
EheI GGCGCC 1 cut(s) 259
Esp3I CGTCTC 1 cut(s) 137
FalI AAGNNNNNCTT 2 cut(s) 163, 195
FauI CCCGC 1 cut(s) 376
Fnu4HI GCNGC 6 cut(s) 20, 109, 145, 156, 233, 261
FriOI GRGCYC 1 cut(s) 310
Fsp4HI GCNGC 6 cut(s) 20, 109, 145, 156, 233, 261
FspBI CTAG 1 cut(s) 149
GlaI GCGC 1 cut(s) 259
GluI GCNGC 6 cut(s) 20, 109, 145, 156, 233, 261
HaeII RGCGCY 1 cut(s) 261
HapII CCGG 2 cut(s) 70, 311
HgaI GACGC 1 cut(s) 286
HhaI GCGC 1 cut(s) 260
Hin1I GRCGYC 1 cut(s) 258
Hin6I GCGC 1 cut(s) 258
HinP1I GCGC 1 cut(s) 258
HinfI GANTC 3 cut(s) 4, 194, 403
HpaII CCGG 2 cut(s) 70, 311
HphI GGTGA 3 cut(s) 113, 213, 325
Hpy188I TCNGA 2 cut(s) 199, 354
Hpy99I CGWCG 1 cut(s) 358
HpyAV CCTTC 3 cut(s) 66, 101, 246
HpyCH4V TGCA 1 cut(s) 108
HpyF10VI GCNNNNNNNGC 1 cut(s) 232
Hsp92I GRCGYC 1 cut(s) 258
HspAI GCGC 1 cut(s) 258
KasI GGCGCC 1 cut(s) 257
LguI GCTCTTC 1 cut(s) 165
LmnI GCTCC 3 cut(s) 116, 199, 313
LpnPI CCDG 6 cut(s) 43, 51, 83, 188, 324, 393
Lsp1109I GCAGC 2 cut(s) 31, 120
MaeI CTAG 1 cut(s) 149
MaeIII GTNAC 1 cut(s) 313
MboII GAAGA 5 cut(s) 91, 152, 171, 234, 368
MhlI GDGCHC 1 cut(s) 310
MluCI AATT 1 cut(s) 392
Mly113I GGCGCC 1 cut(s) 258
MlyI GAGTC 1 cut(s) 13
MmeI TCCRAC 3 cut(s) 171, 188, 377
MseI TTAA 1 cut(s) 389
MspA1I CMGCKG 1 cut(s) 383
MspI CCGG 2 cut(s) 70, 311
MwoI GCNNNNNNNGC 1 cut(s) 232
NarI GGCGCC 1 cut(s) 258
NlaIV GGNNCC 2 cut(s) 74, 259
NmuCI GTSAC 1 cut(s) 313
PciSI GCTCTTC 1 cut(s) 165
PcsI WCGNNNNNNNCGW 1 cut(s) 261
PfeI GAWTC 1 cut(s) 194
PinAI ACCGGT 1 cut(s) 69
PkrI GCNGC 6 cut(s) 21, 110, 146, 157, 234, 262
PleI GAGTC 1 cut(s) 12
PluTI GGCGCC 1 cut(s) 261
PpsI GAGTC 1 cut(s) 12
Psp124BI GAGCTC 1 cut(s) 310
PspN4I GGNNCC 2 cut(s) 74, 259
PstI CTGCAG 1 cut(s) 110
SacI GAGCTC 1 cut(s) 310
SapI GCTCTTC 1 cut(s) 165
SaqAI TTAA 1 cut(s) 389
SatI GCNGC 6 cut(s) 20, 109, 145, 156, 233, 261
SchI GAGTC 1 cut(s) 13
SduI GDGCHC 1 cut(s) 310
SetI ASST 9 cut(s) 32, 93, 113, 121, 126, 204, 272, 310, 331
SfcI CTRYAG 1 cut(s) 106
SfoI GGCGCC 1 cut(s) 259
Sse9I AATT 1 cut(s) 392
SsiI CCGC 9 cut(s) 142, 145, 155, 224, 233, 261, 347, 383, 397
SspDI GGCGCC 1 cut(s) 257
SspMI CTAG 1 cut(s) 149
SstI GAGCTC 1 cut(s) 310
TaqII GACCGA 1 cut(s) 125
TasI AATT 1 cut(s) 392
TauI GCSGC 4 cut(s) 147, 158, 235, 263
TfiI GAWTC 1 cut(s) 194
Tru1I TTAA 1 cut(s) 389
Tru9I TTAA 1 cut(s) 389
TseFI GTSAC 1 cut(s) 313
TseI GCWGC 2 cut(s) 19, 108
Tsp45I GTSAC 1 cut(s) 313
TspDTI ATGAA 1 cut(s) 171
TspGWI ACGGA 1 cut(s) 119
XspI CTAG 1 cut(s) 149
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.