Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0026269

Physical Location & Seq

Genomic Coordinates Reverse (-)

86373103 .. 86374290

Gene Structure 1188 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG635300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

ATGCTTGGGTTGTTTCTATGTGGCCCTTCTCCGTCCGCCCTTGACCAATCTGAACATCATGATAATATCCTCACCTTGGAAGTCCCCGTCAGATGCGCCTGCCCCACCGCCGCCCAGGCCGCTGCAGGCATCAAGCAGGTCGTCTACCTAGTCACGTGGGACGACACAACTGAAGCAATCGCTCAACGCTTCGGCGTAGATGAGTCCATCTTGCTCGCAGCCAATGACCTGTTGTCCAGCGACATCATCTATCCCTTCACGCCCTTACCGGTTCCTCTCAAAACCAAACCTTCCCCTCTTCAACTGCAGCTCCCAACCTCACCTCCTCCGTCTCGGTCTCCGCCGCCTAGTGGCGGCTCTTCCAACAACAAGTGGGTCTTCATCGGCGTTGGAATCGGAGCTGGTTGTCTCCTCCTCCTCACCGCCCTCGCCGCCTTCCTCTTCTTATCAAAACGGCGCCGCCGTCAGCTCTGCCAATCTCCCAAACCCAACTTGCGTCCAAAGAGCTCCGGTGACTACACGCCGACCTCTCTGCTACCCACCACCGCCTCCGACGACACAACGAAATCGTGGTCTTCCAGCGGGCTTAAAATTGCGGTGGAGTCCTTGACGCCTTACAAATTCCAAGACCTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008061 GO:0008144 GO:0008150 GO:0008152 GO:0009719 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0019899 GO:0019900 GO:0019901 GO:0023052 GO:0035690 GO:0036211 GO:0038023 GO:0042221 GO:0042493 GO:0042802 GO:0042803 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045087 GO:0046983 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0070887 GO:0071310 GO:0071323 GO:0071417 GO:0071495 GO:0071704 GO:0071944 GO:0097367 GO:0140096 GO:1901564 GO:1901698 GO:1901699 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LysM Pkinase Pkinase_Tyr

Protein Analysis

211

Amino Acids

22.59

Weight (kDa)

8.28

Isoelectric Point (pI)

69.5

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LysM3_LYK4_5	PF23473	48 - 93	8.2e-17	LYK4/5 LysM3 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0026269)

Species	Orthologous Gene IDs
rosa_samantha	Rh2BG624500 Rh2DG635300 Rh6BG465700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	127
AccB1I	GGYRCC	1 cut(s)	456
AccI	GTMKAC	1 cut(s)	144
AcsI	RAATTY	1 cut(s)	620
AcuI	CTGAAG	1 cut(s)	192
AcvI	CACGTG	1 cut(s)	156
AcyI	GRCGYC	2 cut(s)	457, 611
AfiI	CCNNNNNNNGG	3 cut(s)	76, 350, 353
AgeI	ACCGGT	1 cut(s)	268
AgsI	TTSAA	1 cut(s)	302
AhdI	GACNNNNNGTC	1 cut(s)	232
AjnI	CCWGG	1 cut(s)	114
AluBI	AGCT	4 cut(s)	310, 401, 469, 507
AluI	AGCT	4 cut(s)	310, 401, 469, 507
Alw21I	GWGCWC	1 cut(s)	509
Alw26I	GTCTC	3 cut(s)	336, 342, 413
AoxI	GGCC	2 cut(s)	22, 117
ApeKI	GCWGC	3 cut(s)	122, 218, 307
ApoI	RAATTY	1 cut(s)	620
ArsI	GACNNNNNNTTYG	2 cut(s)	557, 589
AsiGI	ACCGGT	1 cut(s)	268
AspLEI	GCGC	2 cut(s)	98, 459
AspS9I	GGNCC	1 cut(s)	23
AsuHPI	GGTGA	4 cut(s)	64, 312, 412, 524
BanI	GGYRCC	1 cut(s)	456
BanII	GRGCYC	1 cut(s)	509
BbrPI	CACGTG	1 cut(s)	156
BbsI	GAAGAC	2 cut(s)	370, 567
Bbv12I	GWGCWC	1 cut(s)	509
BbvI	GCAGC	3 cut(s)	109, 230, 319
BccI	CCATC	1 cut(s)	215
BceAI	ACGGC	2 cut(s)	447, 470
BcgI	CGANNNNNNTGC	2 cut(s)	514, 548
BciT130I	CCWGG	1 cut(s)	116
BcoDI	GTCTC	3 cut(s)	336, 342, 413
BfaI	CTAG	2 cut(s)	149, 348
BfmI	CTRYAG	3 cut(s)	123, 305, 632
BfoI	RGCGCY	1 cut(s)	460
BfuAI	ACCTGC	1 cut(s)	127
BglI	GCCNNNNNGGC	1 cut(s)	116
BisI	GCNGC	9 cut(s)	111, 120, 123, 219, 308, 344, 355, 432, 460
BlsI	GCNGC	9 cut(s)	112, 121, 124, 220, 309, 345, 356, 433, 461
Bme1390I	CCNGG	1 cut(s)	116
BmeRI	GACNNNNNGTC	1 cut(s)	232
BmgT120I	GGNCC	1 cut(s)	23
BmiI	GGNNCC	2 cut(s)	273, 458
BmrFI	CCNGG	1 cut(s)	116
BmsI	GCATC	2 cut(s)	83, 138
BpiI	GAAGAC	2 cut(s)	370, 567
BsaAI	YACGTR	1 cut(s)	156
BsaHI	GRCGYC	2 cut(s)	457, 611
BsaI	GGTCTC	1 cut(s)	342
BsaJI	CCNNGG	2 cut(s)	75, 114
BsaWI	WCCGGW	2 cut(s)	268, 509
BsaXI	ACNNNNNCTCC	4 cut(s)	294, 307, 324, 337
Bsc4I	CCNNNNNNNGG	3 cut(s)	76, 350, 353
Bse118I	RCCGGY	1 cut(s)	268
BseBI	CCWGG	1 cut(s)	116
BseDI	CCNNGG	2 cut(s)	75, 114
BseLI	CCNNNNNNNGG	3 cut(s)	76, 350, 353
BseRI	GAGGAG	4 cut(s)	315, 401, 404, 407
BseXI	GCAGC	3 cut(s)	109, 230, 319
BshFI	GGCC	2 cut(s)	24, 119
BshNI	GGYRCC	1 cut(s)	456
BshTI	ACCGGT	1 cut(s)	268
BsiHKAI	GWGCWC	1 cut(s)	509
BsiSI	CCGG	2 cut(s)	269, 510
BslFI	GGGAC	2 cut(s)	68, 173
BslI	CCNNNNNNNGG	3 cut(s)	76, 350, 353
BsmAI	GTCTC	3 cut(s)	336, 342, 413
BsmBI	CGTCTC	1 cut(s)	336
BsmFI	GGGAC	2 cut(s)	68, 173
BsnI	GGCC	2 cut(s)	24, 119
Bso31I	GGTCTC	1 cut(s)	342
Bsp1286I	GDGCHC	1 cut(s)	509
BspANI	GGCC	2 cut(s)	24, 119
BspHI	TCATGA	1 cut(s)	58
BspLI	GGNNCC	2 cut(s)	273, 458
BspMAI	CTGCAG	2 cut(s)	127, 309
BspMI	ACCTGC	1 cut(s)	127
BspQI	GCTCTTC	1 cut(s)	364
BspT107I	GGYRCC	1 cut(s)	456
BspTNI	GGTCTC	1 cut(s)	342
BsrFI	RCCGGY	1 cut(s)	268
BssAI	RCCGGY	1 cut(s)	268
BssECI	CCNNGG	2 cut(s)	75, 114
BssNI	GRCGYC	2 cut(s)	457, 611
BssT1I	CCWWGG	1 cut(s)	75
Bst2UI	CCWGG	1 cut(s)	116
Bst6I	CTCTTC	3 cut(s)	303, 364, 446
BstACI	GRCGYC	2 cut(s)	457, 611
BstBAI	YACGTR	1 cut(s)	156
BstC8I	GCNNGC	4 cut(s)	100, 127, 216, 584
BstH2I	RGCGCY	1 cut(s)	460
BstHHI	GCGC	2 cut(s)	98, 459
BstMAI	GTCTC	3 cut(s)	336, 342, 413
BstMWI	GCNNNNNNNGC	3 cut(s)	116, 119, 431
BstNI	CCWGG	1 cut(s)	116
BstSCI	CCNGG	1 cut(s)	114
BstSFI	CTRYAG	3 cut(s)	123, 305, 632
BstV1I	GCAGC	3 cut(s)	109, 230, 319
BstV2I	GAAGAC	2 cut(s)	370, 567
BsuRI	GGCC	2 cut(s)	24, 119
BveI	ACCTGC	1 cut(s)	127
Cac8I	GCNNGC	4 cut(s)	100, 127, 216, 584
CciI	TCATGA	1 cut(s)	58
CfoI	GCGC	2 cut(s)	98, 459
Cfr10I	RCCGGY	1 cut(s)	268
Cfr13I	GGNCC	1 cut(s)	23
CseI	GACGC	2 cut(s)	485, 619
CspAI	ACCGGT	1 cut(s)	268
CviAII	CATG	1 cut(s)	59
CviJI	RGCY	9 cut(s)	24, 119, 221, 310, 357, 401, 469, 507, 586
CviKI_1	RGCY	9 cut(s)	24, 119, 221, 310, 357, 401, 469, 507, 586
DinI	GGCGCC	1 cut(s)	458
DriI	GACNNNNNGTC	1 cut(s)	232
Eam1104I	CTCTTC	3 cut(s)	303, 364, 446
Eam1105I	GACNNNNNGTC	1 cut(s)	232
EarI	CTCTTC	3 cut(s)	303, 364, 446
EciI	GGCGGA	2 cut(s)	25, 330
Ecl136II	GAGCTC	1 cut(s)	507
Eco130I	CCWWGG	1 cut(s)	75
Eco24I	GRGCYC	1 cut(s)	509
Eco31I	GGTCTC	1 cut(s)	342
Eco53kI	GAGCTC	1 cut(s)	507
Eco57I	CTGAAG	1 cut(s)	192
Eco72I	CACGTG	1 cut(s)	156
EcoICRI	GAGCTC	1 cut(s)	507
EcoRII	CCWGG	1 cut(s)	114
EcoT14I	CCWWGG	1 cut(s)	75
EcoT38I	GRGCYC	1 cut(s)	509
EgeI	GGCGCC	1 cut(s)	458
EheI	GGCGCC	1 cut(s)	458
ErhI	CCWWGG	1 cut(s)	75
Esp3I	CGTCTC	1 cut(s)	336
FaeI	CATG	1 cut(s)	62
FaiI	YATR	2 cut(s)	19, 60
FalI	AAGNNNNNCTT	2 cut(s)	362, 394
FaqI	GGGAC	2 cut(s)	68, 173
FatI	CATG	1 cut(s)	58
FauI	CCCGC	1 cut(s)	575
FblI	GTMKAC	1 cut(s)	144
Fnu4HI	GCNGC	9 cut(s)	111, 120, 123, 219, 308, 344, 355, 432, 460
FriOI	GRGCYC	1 cut(s)	509
Fsp4HI	GCNGC	9 cut(s)	111, 120, 123, 219, 308, 344, 355, 432, 460
FspBI	CTAG	2 cut(s)	149, 348
GlaI	GCGC	2 cut(s)	97, 458
GluI	GCNGC	9 cut(s)	111, 120, 123, 219, 308, 344, 355, 432, 460
HaeII	RGCGCY	1 cut(s)	460
HaeIII	GGCC	2 cut(s)	24, 119
HapII	CCGG	2 cut(s)	269, 510
HgaI	GACGC	2 cut(s)	485, 619
HhaI	GCGC	2 cut(s)	98, 459
Hin1I	GRCGYC	2 cut(s)	457, 611
Hin1II	CATG	1 cut(s)	62
Hin6I	GCGC	2 cut(s)	96, 457
HinP1I	GCGC	2 cut(s)	96, 457
HinfI	GANTC	3 cut(s)	203, 393, 602
HpaII	CCGG	2 cut(s)	269, 510
HphI	GGTGA	4 cut(s)	64, 312, 412, 524
Hpy166II	GTNNAC	1 cut(s)	145
Hpy188I	TCNGA	4 cut(s)	52, 92, 398, 553
Hpy188III	TCNNGA	1 cut(s)	59
Hpy8I	GTNNAC	1 cut(s)	145
Hpy99I	CGWCG	1 cut(s)	557
HpyAV	CCTTC	4 cut(s)	36, 265, 300, 445
HpyCH4IV	ACGT	1 cut(s)	155
HpyCH4V	TGCA	2 cut(s)	125, 307
HpyF10VI	GCNNNNNNNGC	3 cut(s)	116, 119, 431
HpySE526I	ACGT	1 cut(s)	155
Hsp92I	GRCGYC	2 cut(s)	457, 611
Hsp92II	CATG	1 cut(s)	62
HspAI	GCGC	2 cut(s)	96, 457
KasI	GGCGCC	1 cut(s)	456
LguI	GCTCTTC	1 cut(s)	364
LmnI	GCTCC	3 cut(s)	315, 398, 512
Lsp1109I	GCAGC	3 cut(s)	109, 230, 319
LweI	GCATC	2 cut(s)	83, 138
MaeI	CTAG	2 cut(s)	149, 348
MaeII	ACGT	1 cut(s)	155
MaeIII	GTNAC	2 cut(s)	151, 512
MboII	GAAGA	5 cut(s)	290, 351, 370, 433, 567
MhlI	GDGCHC	1 cut(s)	509
MluCI	AATT	2 cut(s)	591, 620
Mly113I	GGCGCC	1 cut(s)	457
MlyI	GAGTC	2 cut(s)	212, 611
MmeI	TCCRAC	3 cut(s)	370, 387, 576
MseI	TTAA	1 cut(s)	588
MspA1I	CMGCKG	2 cut(s)	122, 582
MspI	CCGG	2 cut(s)	269, 510
MspR9I	CCNGG	1 cut(s)	116
MvaI	CCWGG	1 cut(s)	116
MwoI	GCNNNNNNNGC	3 cut(s)	116, 119, 431
NarI	GGCGCC	1 cut(s)	457
NlaIII	CATG	1 cut(s)	62
NlaIV	GGNNCC	2 cut(s)	273, 458
NmuCI	GTSAC	2 cut(s)	151, 512
PagI	TCATGA	1 cut(s)	58
PciSI	GCTCTTC	1 cut(s)	364
PcsI	WCGNNNNNNNCGW	1 cut(s)	460
PfeI	GAWTC	1 cut(s)	393
PinAI	ACCGGT	1 cut(s)	268
PkrI	GCNGC	9 cut(s)	112, 121, 124, 220, 309, 345, 356, 433, 461
PleI	GAGTC	2 cut(s)	211, 610
PluTI	GGCGCC	1 cut(s)	460
PmaCI	CACGTG	1 cut(s)	156
PmlI	CACGTG	1 cut(s)	156
PpsI	GAGTC	2 cut(s)	211, 610
Ppu21I	YACGTR	1 cut(s)	156
Psp124BI	GAGCTC	1 cut(s)	509
Psp6I	CCWGG	1 cut(s)	114
PspCI	CACGTG	1 cut(s)	156
PspGI	CCWGG	1 cut(s)	114
PspN4I	GGNNCC	2 cut(s)	273, 458
PspPI	GGNCC	1 cut(s)	23
PstI	CTGCAG	2 cut(s)	127, 309
SacI	GAGCTC	1 cut(s)	509
SapI	GCTCTTC	1 cut(s)	364
SaqAI	TTAA	1 cut(s)	588
SatI	GCNGC	9 cut(s)	111, 120, 123, 219, 308, 344, 355, 432, 460
Sau96I	GGNCC	1 cut(s)	23
SchI	GAGTC	2 cut(s)	212, 611
ScrFI	CCNGG	1 cut(s)	116
SduI	GDGCHC	1 cut(s)	509
SfaNI	GCATC	2 cut(s)	83, 138
SfcI	CTRYAG	3 cut(s)	123, 305, 632
SfoI	GGCGCC	1 cut(s)	458
Sse9I	AATT	2 cut(s)	591, 620
SspDI	GGCGCC	1 cut(s)	456
SspMI	CTAG	2 cut(s)	149, 348
SstI	GAGCTC	1 cut(s)	509
StyD4I	CCNGG	1 cut(s)	114
StyI	CCWWGG	1 cut(s)	75
TaiI	ACGT	1 cut(s)	158
TaqII	GACCGA	1 cut(s)	324
TasI	AATT	2 cut(s)	591, 620
TauI	GCSGC	6 cut(s)	113, 122, 346, 357, 434, 462
TfiI	GAWTC	1 cut(s)	393
Tru1I	TTAA	1 cut(s)	588
Tru9I	TTAA	1 cut(s)	588
TseFI	GTSAC	2 cut(s)	151, 512
TseI	GCWGC	3 cut(s)	122, 218, 307
Tsp45I	GTSAC	2 cut(s)	151, 512
TspDTI	ATGAA	1 cut(s)	370
TspGWI	ACGGA	2 cut(s)	21, 318
XapI	RAATTY	1 cut(s)	620
XmiI	GTMKAC	1 cut(s)	144
XspI	CTAG	2 cut(s)	149, 348

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.