Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0026269

Physical Location & Seq

Genomic Coordinates Forward (+)

67475661 .. 67476905

Gene Structure 1245 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG465700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 615 bp

ATGCAGGGCGAGTGTTCCATTGTAGACGATCCTTTCTCCATTCCACAGCTTCTTCTTAGCATAAGTTTGGAAAGCGTCAAAGCAACTTTGTTGCCAATGTTCTTCTTCTATGTTCTCCCTGGTGCAGCAGAGGACCAATCTGAACATCATGATAATATCCTCACCTTGGAAGTCCCCCTCAGATGCGCCTGCCCCACCGCCGCCCAGGCCGCTGCCGGCATCAACTACCTGCTCGTCTACCTAGTCACGTGGGACGACACAACTGAAGCAATCGCTCAACGCTTCGGCGTAGATGAGTCCACCTTGCTCGCAGCCAATGACCTGTTGTCCAGCGACATCATCTATCCCTTCACGCCCTTACTGGCGACAACGACAAGTGGGTCTTCATCGGCGTCGGAATCGGAGCTGGTTGTCTCCTCCTCCTCACCGCCCTCGCCGCCTTCCTCTTCTTATCAAAACGGCGCCGCTGTCAGCTCCGCCAATCTCCCAAACCCAACTTGCGTCCAAAGAGCTCCGGTGACTACACGCCGACCTCTCTGCTACCCACCACCGCCTCCGACGACACAACGAAATCGTGGTCTTCCAGCGGGCTTAAAATTGCGGTGGAGTCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0002376 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004675 GO:0004888 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006952 GO:0006955 GO:0007154 GO:0007165 GO:0007166 GO:0007167 GO:0007178 GO:0008061 GO:0008144 GO:0008150 GO:0008152 GO:0009719 GO:0009987 GO:0010033 GO:0010200 GO:0010243 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019199 GO:0019538 GO:0019899 GO:0019900 GO:0019901 GO:0023052 GO:0035690 GO:0036211 GO:0038023 GO:0042221 GO:0042493 GO:0042802 GO:0042803 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0045087 GO:0046983 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0060089 GO:0065007 GO:0070887 GO:0071310 GO:0071323 GO:0071417 GO:0071495 GO:0071704 GO:0071944 GO:0097367 GO:0140096 GO:1901564 GO:1901698 GO:1901699 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LysM Pkinase Pkinase_Tyr

Protein Analysis

204

Amino Acids

21.75

Weight (kDa)

4.57

Isoelectric Point (pI)

62.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LysM3_LYK4_5	PF23473	76 - 121	8.3e-19	LYK4/5 LysM3 domain
LysM	PF01476	80 - 120	4e-06	LysM domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0026269)

Species	Orthologous Gene IDs
rosa_samantha	Rh2BG624500 Rh2DG635300 Rh6BG465700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	379
Acc36I	ACCTGC	1 cut(s)	237
AccB1I	GGYRCC	1 cut(s)	461
AccI	GTMKAC	2 cut(s)	24, 237
AclWI	GGATC	1 cut(s)	23
AcuI	CTGAAG	1 cut(s)	285
AcvI	CACGTG	1 cut(s)	249
AcyI	GRCGYC	2 cut(s)	392, 462
AfiI	CCNNNNNNNGG	1 cut(s)	166
AhdI	GACNNNNNGTC	1 cut(s)	325
AjnI	CCWGG	2 cut(s)	118, 204
AluBI	AGCT	4 cut(s)	49, 406, 474, 512
AluI	AGCT	4 cut(s)	49, 406, 474, 512
Alw21I	GWGCWC	1 cut(s)	514
Alw26I	GTCTC	1 cut(s)	418
AlwI	GGATC	1 cut(s)	23
AoxI	GGCC	1 cut(s)	207
ApeKI	GCWGC	3 cut(s)	125, 212, 311
ArsI	GACNNNNNNTTYG	2 cut(s)	562, 594
AspLEI	GCGC	2 cut(s)	188, 464
AspS9I	GGNCC	1 cut(s)	133
AsuHPI	GGTGA	3 cut(s)	154, 417, 529
AvaII	GGWCC	1 cut(s)	133
BanI	GGYRCC	1 cut(s)	461
BanII	GRGCYC	1 cut(s)	514
BbrPI	CACGTG	1 cut(s)	249
BbsI	GAAGAC	2 cut(s)	375, 572
Bbv12I	GWGCWC	1 cut(s)	514
BbvI	GCAGC	3 cut(s)	137, 199, 323
BceAI	ACGGC	1 cut(s)	475
BcgI	CGANNNNNNTGC	2 cut(s)	519, 553
BciT130I	CCWGG	2 cut(s)	120, 206
BcoDI	GTCTC	1 cut(s)	418
BfaI	CTAG	1 cut(s)	242
BfoI	RGCGCY	1 cut(s)	465
BfuAI	ACCTGC	1 cut(s)	237
BglI	GCCNNNNNGGC	1 cut(s)	206
BisI	GCNGC	7 cut(s)	126, 201, 210, 213, 312, 437, 465
BlsI	GCNGC	7 cut(s)	127, 202, 211, 214, 313, 438, 466
Bme1390I	CCNGG	2 cut(s)	120, 206
Bme18I	GGWCC	1 cut(s)	133
BmeRI	GACNNNNNGTC	1 cut(s)	325
BmgT120I	GGNCC	1 cut(s)	133
BmiI	GGNNCC	1 cut(s)	463
BmrFI	CCNGG	2 cut(s)	120, 206
BmsI	GCATC	2 cut(s)	173, 228
BpiI	GAAGAC	2 cut(s)	375, 572
BsaAI	YACGTR	1 cut(s)	249
BsaHI	GRCGYC	2 cut(s)	392, 462
BsaJI	CCNNGG	3 cut(s)	118, 165, 204
BsaWI	WCCGGW	1 cut(s)	514
Bsc4I	CCNNNNNNNGG	1 cut(s)	166
Bse118I	RCCGGY	1 cut(s)	215
Bse1I	ACTGG	1 cut(s)	366
BseBI	CCWGG	2 cut(s)	120, 206
BseDI	CCNNGG	3 cut(s)	118, 165, 204
BseLI	CCNNNNNNNGG	1 cut(s)	166
BseMII	CTCAG	1 cut(s)	193
BseNI	ACTGG	1 cut(s)	366
BseRI	GAGGAG	3 cut(s)	406, 409, 412
BseXI	GCAGC	3 cut(s)	137, 199, 323
BsgI	GTGCAG	1 cut(s)	144
BshFI	GGCC	1 cut(s)	209
BshNI	GGYRCC	1 cut(s)	461
BsiHKAI	GWGCWC	1 cut(s)	514
BsiSI	CCGG	2 cut(s)	216, 515
BslFI	GGGAC	2 cut(s)	158, 266
BslI	CCNNNNNNNGG	1 cut(s)	166
BsmAI	GTCTC	1 cut(s)	418
BsmFI	GGGAC	2 cut(s)	158, 266
BsnI	GGCC	1 cut(s)	209
Bsp1286I	GDGCHC	1 cut(s)	514
Bsp143I	GATC	1 cut(s)	28
BspANI	GGCC	1 cut(s)	209
BspCNI	CTCAG	1 cut(s)	192
BspHI	TCATGA	1 cut(s)	148
BspLI	GGNNCC	1 cut(s)	463
BspMI	ACCTGC	1 cut(s)	237
BspPI	GGATC	1 cut(s)	23
BspT107I	GGYRCC	1 cut(s)	461
BsrFI	RCCGGY	1 cut(s)	215
BsrI	ACTGG	1 cut(s)	366
BssAI	RCCGGY	1 cut(s)	215
BssECI	CCNNGG	3 cut(s)	118, 165, 204
BssMI	GATC	1 cut(s)	28
BssNI	GRCGYC	2 cut(s)	392, 462
BssT1I	CCWWGG	1 cut(s)	165
Bst2UI	CCWGG	2 cut(s)	120, 206
Bst6I	CTCTTC	1 cut(s)	451
BstACI	GRCGYC	2 cut(s)	392, 462
BstBAI	YACGTR	1 cut(s)	249
BstC8I	GCNNGC	4 cut(s)	190, 217, 309, 589
BstDEI	CTNAG	2 cut(s)	56, 179
BstH2I	RGCGCY	1 cut(s)	465
BstHHI	GCGC	2 cut(s)	188, 464
BstKTI	GATC	1 cut(s)	31
BstMAI	GTCTC	1 cut(s)	418
BstMBI	GATC	1 cut(s)	28
BstMWI	GCNNNNNNNGC	3 cut(s)	206, 209, 436
BstNI	CCWGG	2 cut(s)	120, 206
BstSCI	CCNGG	2 cut(s)	118, 204
BstV1I	GCAGC	3 cut(s)	137, 199, 323
BstV2I	GAAGAC	2 cut(s)	375, 572
BsuRI	GGCC	1 cut(s)	209
BveI	ACCTGC	1 cut(s)	237
Cac8I	GCNNGC	4 cut(s)	190, 217, 309, 589
CciI	TCATGA	1 cut(s)	148
CfoI	GCGC	2 cut(s)	188, 464
Cfr10I	RCCGGY	1 cut(s)	215
Cfr13I	GGNCC	1 cut(s)	133
CseI	GACGC	3 cut(s)	64, 381, 490
CviAII	CATG	1 cut(s)	149
CviJI	RGCY	7 cut(s)	49, 209, 314, 406, 474, 512, 591
CviKI_1	RGCY	7 cut(s)	49, 209, 314, 406, 474, 512, 591
DdeI	CTNAG	2 cut(s)	56, 179
DinI	GGCGCC	1 cut(s)	463
DpnI	GATC	1 cut(s)	30
DpnII	GATC	1 cut(s)	28
DrdI	GACNNNNNNGTC	1 cut(s)	379
DriI	GACNNNNNGTC	1 cut(s)	325
DseDI	GACNNNNNNGTC	1 cut(s)	379
Eam1104I	CTCTTC	1 cut(s)	451
Eam1105I	GACNNNNNGTC	1 cut(s)	325
EarI	CTCTTC	1 cut(s)	451
EciI	GGCGGA	1 cut(s)	466
Ecl136II	GAGCTC	1 cut(s)	512
Eco130I	CCWWGG	1 cut(s)	165
Eco24I	GRGCYC	1 cut(s)	514
Eco47I	GGWCC	1 cut(s)	133
Eco53kI	GAGCTC	1 cut(s)	512
Eco57I	CTGAAG	1 cut(s)	285
Eco72I	CACGTG	1 cut(s)	249
EcoICRI	GAGCTC	1 cut(s)	512
EcoRII	CCWGG	2 cut(s)	118, 204
EcoT14I	CCWWGG	1 cut(s)	165
EcoT38I	GRGCYC	1 cut(s)	514
EgeI	GGCGCC	1 cut(s)	463
EheI	GGCGCC	1 cut(s)	463
ErhI	CCWWGG	1 cut(s)	165
FaeI	CATG	1 cut(s)	152
FaiI	YATR	3 cut(s)	62, 111, 150
FalI	AAGNNNNNCTT	2 cut(s)	367, 399
FaqI	GGGAC	2 cut(s)	158, 266
FatI	CATG	1 cut(s)	148
FauI	CCCGC	1 cut(s)	580
FblI	GTMKAC	2 cut(s)	24, 237
Fnu4HI	GCNGC	7 cut(s)	126, 201, 210, 213, 312, 437, 465
FriOI	GRGCYC	1 cut(s)	514
Fsp4HI	GCNGC	7 cut(s)	126, 201, 210, 213, 312, 437, 465
FspBI	CTAG	1 cut(s)	242
GlaI	GCGC	2 cut(s)	187, 463
GluI	GCNGC	7 cut(s)	126, 201, 210, 213, 312, 437, 465
HaeII	RGCGCY	1 cut(s)	465
HaeIII	GGCC	1 cut(s)	209
HapII	CCGG	2 cut(s)	216, 515
HgaI	GACGC	3 cut(s)	64, 381, 490
HhaI	GCGC	2 cut(s)	188, 464
Hin1I	GRCGYC	2 cut(s)	392, 462
Hin1II	CATG	1 cut(s)	152
Hin6I	GCGC	2 cut(s)	186, 462
HinP1I	GCGC	2 cut(s)	186, 462
HinfI	GANTC	3 cut(s)	296, 398, 607
HpaII	CCGG	2 cut(s)	216, 515
HphI	GGTGA	3 cut(s)	154, 417, 529
Hpy166II	GTNNAC	3 cut(s)	25, 238, 300
Hpy188I	TCNGA	5 cut(s)	142, 182, 397, 403, 558
Hpy188III	TCNNGA	1 cut(s)	149
Hpy8I	GTNNAC	3 cut(s)	25, 238, 300
Hpy99I	CGWCG	2 cut(s)	397, 562
HpyAV	CCTTC	2 cut(s)	358, 450
HpyCH4IV	ACGT	1 cut(s)	248
HpyCH4V	TGCA	2 cut(s)	4, 125
HpyF10VI	GCNNNNNNNGC	3 cut(s)	206, 209, 436
HpyF3I	CTNAG	2 cut(s)	56, 179
HpySE526I	ACGT	1 cut(s)	248
Hsp92I	GRCGYC	2 cut(s)	392, 462
Hsp92II	CATG	1 cut(s)	152
HspAI	GCGC	2 cut(s)	186, 462
KasI	GGCGCC	1 cut(s)	461
KroI	GCCGGC	1 cut(s)	215
KroNI	GCCGGC	1 cut(s)	217
Kzo9I	GATC	1 cut(s)	28
LmnI	GCTCC	3 cut(s)	403, 479, 517
Lsp1109I	GCAGC	3 cut(s)	137, 199, 323
LweI	GCATC	2 cut(s)	173, 228
MaeI	CTAG	1 cut(s)	242
MaeII	ACGT	1 cut(s)	248
MaeIII	GTNAC	2 cut(s)	244, 517
MalI	GATC	1 cut(s)	30
MboI	GATC	1 cut(s)	28
MboII	GAAGA	6 cut(s)	44, 94, 97, 375, 438, 572
MhlI	GDGCHC	1 cut(s)	514
MluCI	AATT	1 cut(s)	596
Mly113I	GGCGCC	1 cut(s)	462
MlyI	GAGTC	1 cut(s)	305
MmeI	TCCRAC	2 cut(s)	375, 581
MroNI	GCCGGC	1 cut(s)	215
MseI	TTAA	1 cut(s)	593
MspA1I	CMGCKG	3 cut(s)	212, 467, 587
MspI	CCGG	2 cut(s)	216, 515
MspR9I	CCNGG	2 cut(s)	120, 206
MvaI	CCWGG	2 cut(s)	120, 206
MwoI	GCNNNNNNNGC	3 cut(s)	206, 209, 436
NaeI	GCCGGC	1 cut(s)	217
NarI	GGCGCC	1 cut(s)	462
NdeII	GATC	1 cut(s)	28
NgoMIV	GCCGGC	1 cut(s)	215
NlaIII	CATG	1 cut(s)	152
NlaIV	GGNNCC	1 cut(s)	463
NmuCI	GTSAC	2 cut(s)	244, 517
PagI	TCATGA	1 cut(s)	148
PdiI	GCCGGC	1 cut(s)	217
PfeI	GAWTC	1 cut(s)	398
PkrI	GCNGC	7 cut(s)	127, 202, 211, 214, 313, 438, 466
PleI	GAGTC	1 cut(s)	304
PluTI	GGCGCC	1 cut(s)	465
PmaCI	CACGTG	1 cut(s)	249
PmlI	CACGTG	1 cut(s)	249
PpsI	GAGTC	1 cut(s)	304
Ppu21I	YACGTR	1 cut(s)	249
Psp124BI	GAGCTC	1 cut(s)	514
Psp6I	CCWGG	2 cut(s)	118, 204
PspCI	CACGTG	1 cut(s)	249
PspGI	CCWGG	2 cut(s)	118, 204
PspN4I	GGNNCC	1 cut(s)	463
PspPI	GGNCC	1 cut(s)	133
SacI	GAGCTC	1 cut(s)	514
SaqAI	TTAA	1 cut(s)	593
SatI	GCNGC	7 cut(s)	126, 201, 210, 213, 312, 437, 465
Sau3AI	GATC	1 cut(s)	28
Sau96I	GGNCC	1 cut(s)	133
SchI	GAGTC	1 cut(s)	305
ScrFI	CCNGG	2 cut(s)	120, 206
SduI	GDGCHC	1 cut(s)	514
SfaNI	GCATC	2 cut(s)	173, 228
SfoI	GGCGCC	1 cut(s)	463
SinI	GGWCC	1 cut(s)	133
Sse9I	AATT	1 cut(s)	596
SspDI	GGCGCC	1 cut(s)	461
SspMI	CTAG	1 cut(s)	242
SstI	GAGCTC	1 cut(s)	514
StyD4I	CCNGG	2 cut(s)	118, 204
StyI	CCWWGG	1 cut(s)	165
TaiI	ACGT	1 cut(s)	251
TasI	AATT	1 cut(s)	596
TauI	GCSGC	4 cut(s)	203, 212, 439, 467
TfiI	GAWTC	1 cut(s)	398
Tru1I	TTAA	1 cut(s)	593
Tru9I	TTAA	1 cut(s)	593
TseFI	GTSAC	2 cut(s)	244, 517
TseI	GCWGC	3 cut(s)	125, 212, 311
Tsp45I	GTSAC	2 cut(s)	244, 517
TspDTI	ATGAA	1 cut(s)	375
VpaK11BI	GGWCC	1 cut(s)	133
XmiI	GTMKAC	2 cut(s)	24, 237
XspI	CTAG	1 cut(s)	242

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.