Rh2DG207300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0021776
Physical Location & Seq
Reverse (-)
19528699 .. 19529232
534 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG207300.1

Sequence Viewer

Length: 471 bp
ATGGAAAACCGTAGCATATCTCTAGCGACGCTCTTCACGCTGATCCTAGCACTGCCTCTGTGTGGCGGCGGCGAGTACAGCGACTCTAGTCCTGTGTCCTCTTTCGGATACTTTCATCCTGGATCTATCTATTACTACTGTATGGTGGCTTCTCATGGCCTTCCTGCTATGACAGCTACTGATTTCTTATGTGGAGATGCTCTGGTGGAGTTGGTTTCAGTTCGTATACCGGATTGGACGAGGCTTGTGGAGGAGGCTGGAGTTGTGCTTTGCGGTGATAACAAAGTCGTCAGTCGCTGGTGTCGAGATTGCGGCCCTGTGGTGGCGGAGACAGTGTTACAAATGCAGTTGAGGGGGTCTCTATGGCTCGAACCTGGTGTTAGCATGGCAAGTGCGAGGTTTATACCCAAATGCGGCGGTGCTGTCGAGGTTTACCATACCATGCACTCCGGGGGAGGATGGGAGAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

156

Amino Acids

16.88

Weight (kDa)

5.24

Isoelectric Point (pI)

48.29

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0021776)

Species Orthologous Gene IDs
rosa_samantha Rh2DG207200 Rh2DG207300 Rh4AG307600 Rh4BG315200 Rh4CG330700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 226
AciI CCGC 7 cut(s) 66, 69, 273, 312, 326, 414, 417
AclWI GGATC 2 cut(s) 37, 130
AfaI GTAC 1 cut(s) 77
AfiI CCNNNNNNNGG 3 cut(s) 62, 322, 413
AjnI CCWGG 2 cut(s) 118, 373
AluBI AGCT 1 cut(s) 176
AluI AGCT 1 cut(s) 176
Alw26I GTCTC 2 cut(s) 323, 363
AlwI GGATC 2 cut(s) 37, 130
AlwNI CAGNNNCTG 2 cut(s) 179, 297
AoxI GGCC 2 cut(s) 157, 313
AspS9I GGNCC 1 cut(s) 314
AsuC2I CCSGG 1 cut(s) 451
AsuHPI GGTGA 1 cut(s) 287
BarI GAAGNNNNNNTAC 2 cut(s) 133, 165
BccI CCATC 1 cut(s) 453
BciT130I CCWGG 2 cut(s) 120, 375
BciVI GTATCC 1 cut(s) 101
BcnI CCSGG 1 cut(s) 451
BcoDI GTCTC 2 cut(s) 323, 363
BfaI CTAG 3 cut(s) 23, 47, 87
BfuI GTATCC 1 cut(s) 101
BisI GCNGC 4 cut(s) 67, 70, 313, 415
BlsI GCNGC 4 cut(s) 68, 71, 314, 416
Bme1390I CCNGG 3 cut(s) 120, 375, 451
BmgT120I GGNCC 1 cut(s) 314
BmrFI CCNGG 3 cut(s) 120, 375, 451
BmsI GCATC 1 cut(s) 187
BoxI GACNNNNGTC 1 cut(s) 87
BplI GAGNNNNNCTC 2 cut(s) 343, 375
BpmI CTGGAG 1 cut(s) 279
BpuMI CCSGG 1 cut(s) 451
BsaI GGTCTC 1 cut(s) 363
BsaJI CCNNGG 1 cut(s) 450
BsaWI WCCGGW 1 cut(s) 229
BsaXI ACNNNNNCTCC 2 cut(s) 320, 350
Bsc4I CCNNNNNNNGG 3 cut(s) 62, 322, 413
BseBI CCWGG 2 cut(s) 120, 375
BseDI CCNNGG 1 cut(s) 450
BseGI GGATG 2 cut(s) 115, 464
BseLI CCNNNNNNNGG 3 cut(s) 62, 322, 413
BseRI GAGGAG 1 cut(s) 266
BshFI GGCC 2 cut(s) 159, 315
BsiSI CCGG 2 cut(s) 230, 450
BslI CCNNNNNNNGG 3 cut(s) 62, 322, 413
BsmAI GTCTC 2 cut(s) 323, 363
BsnI GGCC 2 cut(s) 159, 315
Bso31I GGTCTC 1 cut(s) 363
Bsp143I GATC 2 cut(s) 42, 122
BspACI CCGC 7 cut(s) 66, 69, 273, 312, 326, 414, 417
BspANI GGCC 2 cut(s) 159, 315
BspPI GGATC 2 cut(s) 37, 130
BspQI GCTCTTC 1 cut(s) 38
BspTNI GGTCTC 1 cut(s) 363
BssECI CCNNGG 1 cut(s) 450
BssMI GATC 2 cut(s) 42, 122
BssNAI GTATAC 1 cut(s) 227
Bst1107I GTATAC 1 cut(s) 227
Bst2UI CCWGG 2 cut(s) 120, 375
Bst4CI ACNGT 3 cut(s) 11, 140, 334
Bst6I CTCTTC 1 cut(s) 38
BstF5I GGATG 2 cut(s) 115, 464
BstKTI GATC 2 cut(s) 45, 125
BstMAI GTCTC 2 cut(s) 323, 363
BstMBI GATC 2 cut(s) 42, 122
BstMWI GCNNNNNNNGC 3 cut(s) 37, 78, 173
BstNI CCWGG 2 cut(s) 120, 375
BstPAI GACNNNNGTC 1 cut(s) 87
BstSCI CCNGG 3 cut(s) 118, 373, 449
BstX2I RGATCY 1 cut(s) 122
BstYI RGATCY 1 cut(s) 122
BstZ17I GTATAC 1 cut(s) 227
BsuI GTATCC 1 cut(s) 101
BsuRI GGCC 2 cut(s) 159, 315
BtsCI GGATG 2 cut(s) 115, 464
BtsI GCAGTG 1 cut(s) 50
BtsIMutI CAGTG 2 cut(s) 50, 339
CaiI CAGNNNCTG 2 cut(s) 179, 297
Cfr13I GGNCC 1 cut(s) 314
CseI GACGC 1 cut(s) 37
CsiI ACCWGGT 1 cut(s) 373
Csp6I GTAC 1 cut(s) 76
CviAII CATG 3 cut(s) 155, 385, 442
CviJI RGCY 7 cut(s) 149, 159, 176, 244, 257, 315, 367
CviKI_1 RGCY 7 cut(s) 149, 159, 176, 244, 257, 315, 367
CviQI GTAC 1 cut(s) 76
DpnI GATC 2 cut(s) 44, 124
DpnII GATC 2 cut(s) 42, 122
Eam1104I CTCTTC 1 cut(s) 38
EarI CTCTTC 1 cut(s) 38
EciI GGCGGA 1 cut(s) 341
Eco31I GGTCTC 1 cut(s) 363
EcoRII CCWGG 2 cut(s) 118, 373
FaeI CATG 3 cut(s) 158, 388, 445
FatI CATG 3 cut(s) 154, 384, 441
FblI GTMKAC 1 cut(s) 226
Fnu4HI GCNGC 4 cut(s) 67, 70, 313, 415
FokI GGATG 1 cut(s) 102
Fsp4HI GCNGC 4 cut(s) 67, 70, 313, 415
FspBI CTAG 3 cut(s) 23, 47, 87
GluI GCNGC 4 cut(s) 67, 70, 313, 415
GsuI CTGGAG 1 cut(s) 279
HaeIII GGCC 2 cut(s) 159, 315
HapII CCGG 2 cut(s) 230, 450
HgaI GACGC 1 cut(s) 37
Hin1II CATG 3 cut(s) 158, 388, 445
HinfI GANTC 1 cut(s) 83
HpaII CCGG 2 cut(s) 230, 450
HphI GGTGA 1 cut(s) 287
Hpy166II GTNNAC 2 cut(s) 227, 433
Hpy188I TCNGA 1 cut(s) 107
Hpy188III TCNNGA 1 cut(s) 305
Hpy8I GTNNAC 2 cut(s) 227, 433
Hpy99I CGWCG 1 cut(s) 31
HpyAV CCTTC 1 cut(s) 170
HpyCH4III ACNGT 3 cut(s) 11, 140, 334
HpyCH4V TGCA 2 cut(s) 346, 445
HpyF10VI GCNNNNNNNGC 3 cut(s) 37, 78, 173
Hsp92II CATG 3 cut(s) 158, 388, 445
Kzo9I GATC 2 cut(s) 42, 122
LguI GCTCTTC 1 cut(s) 38
LweI GCATC 1 cut(s) 187
MabI ACCWGGT 1 cut(s) 373
MaeI CTAG 3 cut(s) 23, 47, 87
MaeIII GTNAC 1 cut(s) 336
MalI GATC 2 cut(s) 44, 124
MboI GATC 2 cut(s) 42, 122
MboII GAAGA 1 cut(s) 25
MflI RGATCY 1 cut(s) 122
MlyI GAGTC 1 cut(s) 77
MspI CCGG 2 cut(s) 230, 450
MspR9I CCNGG 3 cut(s) 120, 375, 451
MvaI CCWGG 2 cut(s) 120, 375
MwoI GCNNNNNNNGC 3 cut(s) 37, 78, 173
NciI CCSGG 1 cut(s) 451
NdeII GATC 2 cut(s) 42, 122
NlaIII CATG 3 cut(s) 158, 388, 445
PciSI GCTCTTC 1 cut(s) 38
PcsI WCGNNNNNNNCGW 1 cut(s) 301
PfoI TCCNGGA 1 cut(s) 118
PkrI GCNGC 4 cut(s) 68, 71, 314, 416
PleI GAGTC 1 cut(s) 77
PpsI GAGTC 1 cut(s) 77
PshAI GACNNNNGTC 1 cut(s) 87
Psp6I CCWGG 2 cut(s) 118, 373
PspGI CCWGG 2 cut(s) 118, 373
PspPI GGNCC 1 cut(s) 314
PstNI CAGNNNCTG 2 cut(s) 179, 297
PsuI RGATCY 1 cut(s) 122
RsaI GTAC 1 cut(s) 77
RsaNI GTAC 1 cut(s) 76
SapI GCTCTTC 1 cut(s) 38
SatI GCNGC 4 cut(s) 67, 70, 313, 415
Sau3AI GATC 2 cut(s) 42, 122
Sau96I GGNCC 1 cut(s) 314
SchI GAGTC 1 cut(s) 77
ScrFI CCNGG 3 cut(s) 120, 375, 451
SetI ASST 5 cut(s) 178, 376, 401, 432, 470
SexAI ACCWGGT 1 cut(s) 373
SfaNI GCATC 1 cut(s) 187
SsiI CCGC 7 cut(s) 66, 69, 273, 312, 326, 414, 417
SspMI CTAG 3 cut(s) 23, 47, 87
StyD4I CCNGG 3 cut(s) 118, 373, 449
TaaI ACNGT 3 cut(s) 11, 140, 334
TaqI TCGA 3 cut(s) 304, 369, 426
TatI WGTACW 1 cut(s) 75
TauI GCSGC 4 cut(s) 69, 72, 315, 417
TscAI CASTG 2 cut(s) 57, 339
TspDTI ATGAA 1 cut(s) 104
TspRI CASTG 2 cut(s) 57, 339
XmiI GTMKAC 1 cut(s) 226
XspI CTAG 3 cut(s) 23, 47, 87
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.