Rh4BG315200

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0021776
Physical Location & Seq
Reverse (-)
48267782 .. 48268051
270 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG315200.1

Sequence Viewer

Length: 270 bp
ATGGTGGCTTTTCATGGCCTTCCTGCTATGACAGCTGTTGATTTCTTATGTGGAGATGCTCCGGTGAGGGGACCTGGCTGGGGTGATTATACCGATTTTTATCCCAAGTCGGAGGTCGACAATCAAGTGGAGTTGGTTTCGGTCTGTATACCTGACTGGCCGGGGCTTGTGGCGGAGGCTGGAGTTGTGCTTTGTTGTGGTAACAAAGTCGCAGGTCGCTGGTGTCGAGATTGGGGCCCTCTGGAGGCAGAGACGGTGTCACAAGTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

89

Amino Acids

9.57

Weight (kDa)

4.24

Isoelectric Point (pI)

21.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0021776)

Species Orthologous Gene IDs
rosa_samantha Rh2DG207200 Rh2DG207300 Rh4AG307600 Rh4BG315200 Rh4CG330700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 203
AccI GTMKAC 2 cut(s) 117, 148
AciI CCGC 1 cut(s) 173
AcoI YGGCCR 1 cut(s) 158
AfiI CCNNNNNNNGG 3 cut(s) 68, 80, 244
AjnI CCWGG 1 cut(s) 73
AluBI AGCT 1 cut(s) 35
AluI AGCT 1 cut(s) 35
Alw26I GTCTC 1 cut(s) 245
AoxI GGCC 3 cut(s) 16, 158, 235
ApaI GGGCCC 1 cut(s) 239
AspS9I GGNCC 3 cut(s) 71, 235, 236
AsuC2I CCSGG 1 cut(s) 162
AsuHPI GGTGA 2 cut(s) 76, 95
AvaII GGWCC 1 cut(s) 71
BaeGI GKGCMC 1 cut(s) 239
BanII GRGCYC 1 cut(s) 239
BciT130I CCWGG 1 cut(s) 75
BcnI CCSGG 1 cut(s) 162
BcoDI GTCTC 1 cut(s) 245
BfuAI ACCTGC 1 cut(s) 203
Bme1390I CCNGG 2 cut(s) 75, 162
Bme18I GGWCC 1 cut(s) 71
BmgT120I GGNCC 3 cut(s) 71, 235, 236
BmiI GGNNCC 3 cut(s) 72, 236, 237
BmrFI CCNGG 2 cut(s) 75, 162
BmsI GCATC 1 cut(s) 46
BpmI CTGGAG 2 cut(s) 201, 263
BpuMI CCSGG 1 cut(s) 162
BsaBI GATNNNNATC 1 cut(s) 99
BsaJI CCNNGG 1 cut(s) 161
BsaWI WCCGGW 1 cut(s) 61
Bsc4I CCNNNNNNNGG 3 cut(s) 68, 80, 244
Bse1I ACTGG 1 cut(s) 161
Bse8I GATNNNNATC 1 cut(s) 99
BseBI CCWGG 1 cut(s) 75
BseDI CCNNGG 1 cut(s) 161
BseJI GATNNNNATC 1 cut(s) 99
BseLI CCNNNNNNNGG 3 cut(s) 68, 80, 244
BseNI ACTGG 1 cut(s) 161
BseSI GKGCMC 1 cut(s) 239
BseYI CCCAGC 1 cut(s) 78
BshFI GGCC 3 cut(s) 18, 160, 237
BsiSI CCGG 2 cut(s) 62, 161
BslFI GGGAC 1 cut(s) 84
BslI CCNNNNNNNGG 3 cut(s) 68, 80, 244
BsmAI GTCTC 1 cut(s) 245
BsmBI CGTCTC 1 cut(s) 245
BsmFI GGGAC 1 cut(s) 84
BsnI GGCC 3 cut(s) 18, 160, 237
Bsp120I GGGCCC 1 cut(s) 235
Bsp1286I GDGCHC 1 cut(s) 239
BspACI CCGC 1 cut(s) 173
BspANI GGCC 3 cut(s) 18, 160, 237
BspLI GGNNCC 3 cut(s) 72, 236, 237
BspMI ACCTGC 1 cut(s) 203
BsrI ACTGG 1 cut(s) 161
BssECI CCNNGG 1 cut(s) 161
BssNAI GTATAC 1 cut(s) 149
Bst1107I GTATAC 1 cut(s) 149
Bst2UI CCWGG 1 cut(s) 75
Bst4CI ACNGT 1 cut(s) 256
BstMAI GTCTC 1 cut(s) 245
BstMWI GCNNNNNNNGC 1 cut(s) 32
BstNI CCWGG 1 cut(s) 75
BstSCI CCNGG 2 cut(s) 73, 160
BstSLI GKGCMC 1 cut(s) 239
BstZ17I GTATAC 1 cut(s) 149
BsuRI GGCC 3 cut(s) 18, 160, 237
BveI ACCTGC 1 cut(s) 203
Cfr13I GGNCC 3 cut(s) 71, 235, 236
CviAII CATG 1 cut(s) 14
CviJI RGCY 8 cut(s) 8, 18, 35, 78, 160, 166, 179, 237
CviKI_1 RGCY 8 cut(s) 8, 18, 35, 78, 160, 166, 179, 237
EaeI YGGCCR 1 cut(s) 158
EciI GGCGGA 1 cut(s) 188
Eco24I GRGCYC 1 cut(s) 239
Eco47I GGWCC 1 cut(s) 71
EcoO109I RGGNCCY 3 cut(s) 71, 235, 236
EcoRII CCWGG 1 cut(s) 73
EcoT38I GRGCYC 1 cut(s) 239
Esp3I CGTCTC 1 cut(s) 245
FaeI CATG 1 cut(s) 17
FaiI YATR 5 cut(s) 15, 29, 49, 90, 149
FaqI GGGAC 1 cut(s) 84
FatI CATG 1 cut(s) 13
FblI GTMKAC 2 cut(s) 117, 148
FriOI GRGCYC 1 cut(s) 239
GsaI CCCAGC 1 cut(s) 82
GsuI CTGGAG 2 cut(s) 201, 263
HaeIII GGCC 3 cut(s) 18, 160, 237
HapII CCGG 2 cut(s) 62, 161
Hin1II CATG 1 cut(s) 17
HincII GTYRAC 1 cut(s) 118
HindII GTYRAC 1 cut(s) 118
HpaII CCGG 2 cut(s) 62, 161
HphI GGTGA 2 cut(s) 76, 95
Hpy166II GTNNAC 2 cut(s) 118, 149
Hpy188I TCNGA 1 cut(s) 112
Hpy188III TCNNGA 2 cut(s) 227, 242
Hpy8I GTNNAC 2 cut(s) 118, 149
HpyAV CCTTC 1 cut(s) 29
HpyCH4III ACNGT 1 cut(s) 256
HpyF10VI GCNNNNNNNGC 1 cut(s) 32
Hsp92II CATG 1 cut(s) 17
LmnI GCTCC 1 cut(s) 64
LweI GCATC 1 cut(s) 46
MaeIII GTNAC 2 cut(s) 200, 258
MhlI GDGCHC 1 cut(s) 239
MmeI TCCRAC 1 cut(s) 90
MnlI CCTC 5 cut(s) 60, 106, 169, 238, 249
MspA1I CMGCKG 1 cut(s) 35
MspI CCGG 2 cut(s) 62, 161
MspR9I CCNGG 2 cut(s) 75, 162
MvaI CCWGG 1 cut(s) 75
MwoI GCNNNNNNNGC 1 cut(s) 32
NciI CCSGG 1 cut(s) 162
NlaIII CATG 1 cut(s) 17
NlaIV GGNNCC 3 cut(s) 72, 236, 237
NmuCI GTSAC 1 cut(s) 258
PcsI WCGNNNNNNNCGW 1 cut(s) 223
PflFI GACNNNGTC 1 cut(s) 256
PpuMI RGGWCCY 1 cut(s) 71
Psp5II RGGWCCY 1 cut(s) 71
Psp6I CCWGG 1 cut(s) 73
PspFI CCCAGC 1 cut(s) 78
PspGI CCWGG 1 cut(s) 73
PspN4I GGNNCC 3 cut(s) 72, 236, 237
PspOMI GGGCCC 1 cut(s) 235
PspPI GGNCC 3 cut(s) 71, 235, 236
PspPPI RGGWCCY 1 cut(s) 71
PsyI GACNNNGTC 1 cut(s) 256
PvuII CAGCTG 1 cut(s) 35
SalI GTCGAC 1 cut(s) 116
Sau96I GGNCC 3 cut(s) 71, 235, 236
ScrFI CCNGG 2 cut(s) 75, 162
SduI GDGCHC 1 cut(s) 239
SetI ASST 5 cut(s) 37, 76, 117, 154, 217
SfaNI GCATC 1 cut(s) 46
SinI GGWCC 1 cut(s) 71
SsiI CCGC 1 cut(s) 173
StyD4I CCNGG 2 cut(s) 73, 160
TaaI ACNGT 1 cut(s) 256
TaqI TCGA 2 cut(s) 117, 226
TaqII GACCGA 1 cut(s) 130
TseFI GTSAC 1 cut(s) 258
Tsp45I GTSAC 1 cut(s) 258
Tth111I GACNNNGTC 1 cut(s) 256
VpaK11BI GGWCC 1 cut(s) 71
XmiI GTMKAC 2 cut(s) 117, 148
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.