Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0024865

Physical Location & Seq

Genomic Coordinates Reverse (-)

72786892 .. 72787212

Gene Structure 321 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG504600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 321 bp

ATGTCTGGGCAAAGCGAGCGTTTGAATGTGGTTCCTACTGTTATAGTGCTTGGAATTATGAAAGCTCGTCCTGTTGGTGCGACGAGAGGTCATGCTCTCCTCAAGAAGAAGAGTGATGCTCTAACTGTGCAGTTTCGTGCCATTCTTAAAAAGATTGTGTCAACCAAAGAATCAATGGGAGATATTATGAAAACCTCCTCCTTCGCCCTTACTGAAGCCAAGTGTATGTTGCTGGTGAGAACATCAAACACGTTGTTCTTGAGAATGTCAACACTGCCTCTCTTAAAGTTCGATCAAAGCAAGACAATGTTGCTGGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0005886 GO:0012505 GO:0016020 GO:0031090 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0071944 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04145 ko04150 ko04721 ko04966 ko05110 ko05120 ko05323 map00190 map01100 map04145 map04150 map04721 map04966 map05110 map05120 map05323

Pfam Domains

Protein Families

ATP-synt_D

Protein Analysis

106

Amino Acids

11.68

Weight (kDa)

10.6

Isoelectric Point (pI)

39.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ATP-synt_D	PF01813	18 - 77	3.7e-13	ATP synthase subunit D

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0024865)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0150691
rosa_samantha	Rh2DG504600 Rh2DG505600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcuI	CTGAAG	1 cut(s)	234
AflIII	ACRYGT	1 cut(s)	249
AgsI	TTSAA	1 cut(s)	25
AhdI	GACNNNNNGTC	1 cut(s)	87
AluBI	AGCT	1 cut(s)	65
AluI	AGCT	1 cut(s)	65
AsuHPI	GGTGA	1 cut(s)	247
BmeRI	GACNNNNNGTC	1 cut(s)	87
BmiI	GGNNCC	1 cut(s)	33
BmsI	GCATC	1 cut(s)	106
BplI	GAGNNNNNCTC	2 cut(s)	103, 135
BpuEI	CTTGAG	2 cut(s)	86, 280
BseRI	GAGGAG	2 cut(s)	89, 187
BsgI	GTGCAG	1 cut(s)	149
Bsp143I	GATC	1 cut(s)	292
BspLI	GGNNCC	1 cut(s)	33
BssMI	GATC	1 cut(s)	292
Bst4CI	ACNGT	2 cut(s)	40, 127
Bst6I	CTCTTC	1 cut(s)	104
BstC8I	GCNNGC	1 cut(s)	17
BstKTI	GATC	1 cut(s)	295
BstMBI	GATC	1 cut(s)	292
BstMWI	GCNNNNNNNGC	1 cut(s)	16
BtsI	GCAGTG	1 cut(s)	272
BtsIMutI	CAGTG	1 cut(s)	272
Cac8I	GCNNGC	1 cut(s)	17
CviAII	CATG	1 cut(s)	92
CviJI	RGCY	2 cut(s)	65, 218
CviKI_1	RGCY	2 cut(s)	65, 218
DpnI	GATC	1 cut(s)	294
DpnII	GATC	1 cut(s)	292
DriI	GACNNNNNGTC	1 cut(s)	87
Eam1104I	CTCTTC	1 cut(s)	104
Eam1105I	GACNNNNNGTC	1 cut(s)	87
EarI	CTCTTC	1 cut(s)	104
Eco57I	CTGAAG	1 cut(s)	234
FaeI	CATG	1 cut(s)	95
FaiI	YATR	5 cut(s)	44, 59, 93, 188, 227
FatI	CATG	1 cut(s)	91
Hin1II	CATG	1 cut(s)	95
HincII	GTYRAC	2 cut(s)	162, 270
HindII	GTYRAC	2 cut(s)	162, 270
HinfI	GANTC	1 cut(s)	170
HphI	GGTGA	1 cut(s)	247
Hpy166II	GTNNAC	2 cut(s)	162, 270
Hpy188III	TCNNGA	2 cut(s)	103, 259
Hpy8I	GTNNAC	2 cut(s)	162, 270
Hpy99I	CGWCG	1 cut(s)	85
HpyAV	CCTTC	1 cut(s)	211
HpyCH4III	ACNGT	2 cut(s)	40, 127
HpyCH4IV	ACGT	1 cut(s)	251
HpyCH4V	TGCA	1 cut(s)	130
HpyF10VI	GCNNNNNNNGC	1 cut(s)	16
HpySE526I	ACGT	1 cut(s)	251
Hsp92II	CATG	1 cut(s)	95
Kzo9I	GATC	1 cut(s)	292
LpnPI	CCDG	3 cut(s)	84, 218, 299
LweI	GCATC	1 cut(s)	106
MaeII	ACGT	1 cut(s)	251
MalI	GATC	1 cut(s)	294
MboI	GATC	1 cut(s)	292
MboII	GAAGA	2 cut(s)	118, 121
MluCI	AATT	1 cut(s)	54
MnlI	CCTC	5 cut(s)	80, 110, 205, 208, 288
MseI	TTAA	2 cut(s)	147, 284
MwoI	GCNNNNNNNGC	1 cut(s)	16
NdeII	GATC	1 cut(s)	292
NlaIII	CATG	1 cut(s)	95
NlaIV	GGNNCC	1 cut(s)	33
PfeI	GAWTC	1 cut(s)	170
PspN4I	GGNNCC	1 cut(s)	33
SaqAI	TTAA	2 cut(s)	147, 284
Sau3AI	GATC	1 cut(s)	292
SetI	ASST	4 cut(s)	67, 91, 197, 254
SfaNI	GCATC	1 cut(s)	106
SmlI	CTYRAG	2 cut(s)	101, 259
SmoI	CTYRAG	2 cut(s)	101, 259
Sse9I	AATT	1 cut(s)	54
TaaI	ACNGT	2 cut(s)	40, 127
TaiI	ACGT	1 cut(s)	254
TaqI	TCGA	1 cut(s)	291
TasI	AATT	1 cut(s)	54
TfiI	GAWTC	1 cut(s)	170
Tru1I	TTAA	2 cut(s)	147, 284
Tru9I	TTAA	2 cut(s)	147, 284
TscAI	CASTG	1 cut(s)	279
TspDTI	ATGAA	2 cut(s)	74, 203
TspRI	CASTG	1 cut(s)	279
XcmI	CCANNNNNNNNNTGG	1 cut(s)	172

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.