Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2D

Orthogroup ID

OG0024865

Physical Location & Seq

Genomic Coordinates Reverse (-)

72927009 .. 72927347

Gene Structure 339 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2DG505600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 339 bp

ATGTCTGGGCAAAGCCAGCGTTTGAATGTGGTTCCTACTGTTACAATGCTTGGAATTATGAAAGCTCGTCTTGTTGGTGCAACTAGAGGTCATGCTCTCCTCAAGAAGAAGAGTGATGCTCTAACTGTTCAGTTTAGAGCCATTCTTAAAAAGATTGTGTCAACCAAAGAATCAATGGGAGATATTATGAAAACCTCCTCCTTCGCCCTTACTGAAGCCAAGTATGTTGCTGGTGAGAACATCAAACACATTGTTCTCGAGAATGTCAACACTGCCTCTCTTAAAGTTCGATCAAAGCAAGAGAATGTTGCTGGTGTAAAGCTCCCAAAATTTGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0005794 GO:0005886 GO:0012505 GO:0016020 GO:0031090 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0071944 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 ko04145 ko04150 ko04721 ko04966 ko05110 ko05120 ko05323 map00190 map01100 map04145 map04150 map04721 map04966 map05110 map05120 map05323

Pfam Domains

Protein Families

ATP-synt_D

Protein Analysis

112

Amino Acids

12.23

Weight (kDa)

10.29

Isoelectric Point (pI)

32.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ATP-synt_D	PF01813	17 - 112	1.9e-25	ATP synthase subunit D

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0024865)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0150691
rosa_samantha	Rh2DG504600 Rh2DG505600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AcsI	RAATTY	1 cut(s)	329
AcuI	CTGAAG	1 cut(s)	234
AgsI	TTSAA	2 cut(s)	25, 335
AluBI	AGCT	2 cut(s)	65, 322
AluI	AGCT	2 cut(s)	65, 322
Ama87I	CYCGRG	1 cut(s)	257
ApoI	RAATTY	1 cut(s)	329
AsuHPI	GGTGA	1 cut(s)	245
AvaI	CYCGRG	1 cut(s)	257
BfaI	CTAG	1 cut(s)	84
BmeT110I	CYCGRG	1 cut(s)	257
BmiI	GGNNCC	1 cut(s)	33
BmsI	GCATC	1 cut(s)	106
BplI	GAGNNNNNCTC	2 cut(s)	103, 135
BpuEI	CTTGAG	1 cut(s)	86
BseRI	GAGGAG	2 cut(s)	89, 187
BsiHKCI	CYCGRG	1 cut(s)	257
BsoBI	CYCGRG	1 cut(s)	257
Bsp143I	GATC	1 cut(s)	290
BspLI	GGNNCC	1 cut(s)	33
BssMI	GATC	1 cut(s)	290
Bst4CI	ACNGT	2 cut(s)	40, 127
Bst6I	CTCTTC	1 cut(s)	104
BstC8I	GCNNGC	1 cut(s)	17
BstKTI	GATC	1 cut(s)	293
BstMBI	GATC	1 cut(s)	290
BstMWI	GCNNNNNNNGC	1 cut(s)	16
BtsI	GCAGTG	1 cut(s)	270
BtsIMutI	CAGTG	1 cut(s)	270
Cac8I	GCNNGC	1 cut(s)	17
CviAII	CATG	1 cut(s)	92
CviJI	RGCY	5 cut(s)	15, 65, 140, 218, 322
CviKI_1	RGCY	5 cut(s)	15, 65, 140, 218, 322
DpnI	GATC	1 cut(s)	292
DpnII	GATC	1 cut(s)	290
Eam1104I	CTCTTC	1 cut(s)	104
EarI	CTCTTC	1 cut(s)	104
Eco57I	CTGAAG	1 cut(s)	234
Eco88I	CYCGRG	1 cut(s)	257
FaeI	CATG	1 cut(s)	95
FaiI	YATR	4 cut(s)	59, 93, 188, 225
FalI	AAGNNNNNCTT	2 cut(s)	54, 86
FatI	CATG	1 cut(s)	91
FspBI	CTAG	1 cut(s)	84
Hin1II	CATG	1 cut(s)	95
HincII	GTYRAC	2 cut(s)	162, 268
HindII	GTYRAC	2 cut(s)	162, 268
HinfI	GANTC	1 cut(s)	170
HphI	GGTGA	1 cut(s)	245
Hpy166II	GTNNAC	2 cut(s)	162, 268
Hpy188III	TCNNGA	3 cut(s)	103, 257, 259
Hpy8I	GTNNAC	2 cut(s)	162, 268
HpyAV	CCTTC	1 cut(s)	211
HpyCH4III	ACNGT	2 cut(s)	40, 127
HpyCH4V	TGCA	1 cut(s)	80
HpyF10VI	GCNNNNNNNGC	1 cut(s)	16
Hsp92II	CATG	1 cut(s)	95
Kzo9I	GATC	1 cut(s)	290
LmnI	GCTCC	1 cut(s)	327
LpnPI	CCDG	3 cut(s)	29, 216, 297
LweI	GCATC	1 cut(s)	106
MaeI	CTAG	1 cut(s)	84
MaeIII	GTNAC	1 cut(s)	40
MalI	GATC	1 cut(s)	292
MboI	GATC	1 cut(s)	290
MboII	GAAGA	2 cut(s)	118, 121
MluCI	AATT	2 cut(s)	54, 329
MnlI	CCTC	5 cut(s)	80, 110, 205, 208, 286
MseI	TTAA	2 cut(s)	147, 282
MwoI	GCNNNNNNNGC	1 cut(s)	16
NdeII	GATC	1 cut(s)	290
NlaIII	CATG	1 cut(s)	95
NlaIV	GGNNCC	1 cut(s)	33
PaeR7I	CTCGAG	1 cut(s)	257
PfeI	GAWTC	1 cut(s)	170
PspN4I	GGNNCC	1 cut(s)	33
SaqAI	TTAA	2 cut(s)	147, 282
Sau3AI	GATC	1 cut(s)	290
SetI	ASST	4 cut(s)	67, 91, 197, 324
SfaNI	GCATC	1 cut(s)	106
Sfr274I	CTCGAG	1 cut(s)	257
SlaI	CTCGAG	1 cut(s)	257
SmlI	CTYRAG	2 cut(s)	101, 257
SmoI	CTYRAG	2 cut(s)	101, 257
Sse9I	AATT	2 cut(s)	54, 329
SspMI	CTAG	1 cut(s)	84
TaaI	ACNGT	2 cut(s)	40, 127
TaqI	TCGA	2 cut(s)	258, 289
TasI	AATT	2 cut(s)	54, 329
TfiI	GAWTC	1 cut(s)	170
Tru1I	TTAA	2 cut(s)	147, 282
Tru9I	TTAA	2 cut(s)	147, 282
TscAI	CASTG	1 cut(s)	277
TspDTI	ATGAA	2 cut(s)	74, 203
TspRI	CASTG	1 cut(s)	277
XapI	RAATTY	1 cut(s)	329
XcmI	CCANNNNNNNNNTGG	1 cut(s)	172
XhoI	CTCGAG	1 cut(s)	257
XspI	CTAG	1 cut(s)	84

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.