Rh3AG235800

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3A
OG0026027
Physical Location & Seq
Reverse (-)
24350390 .. 24380477
30088 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3AG235800.1

Sequence Viewer

Length: 369 bp
ATGTCAATCGATGTACATATACAACAAGTAGACTTTGGCTACAATGACAGAATCAAGATGGTTGTGGATGTTGCTGCAGCTGCTGTAGGACTAGCATTATCAGTGCTGTATAAGGGCATTGAGGAAGTTATCAGAAAGTGCGTGATCGACAAGGTTATGGAGTTTAATCCCCTCCTCAAGAAAATCAATATGAAGATAAAGGAATTAGAGCCAGAGATAGAAGAGATCGAGAAAAGGAATCAAGAATTGGATCGCCCAGAGGAATTGAAAGATTTCACAAAAGTGATCAAGGATGGCACAGCGCTTGTTGACAAGTTAAAGGAGGTTGCCCATTGGTACAAGAAACCTAAGTATGTTGTAGGAGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

122

Amino Acids

14.1

Weight (kDa)

5.79

Isoelectric Point (pI)

30.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RPW8 PF05659 24 - 118 1.1e-12 Arabidopsis broad-spectrum mildew resistance protein RPW8
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Orthologous Genes (Group: OG0026027)

Species Orthologous Gene IDs
rosa_samantha Rh3AG235800 Rh3DG261500 Rh4DG163200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 30
AclWI GGATC 1 cut(s) 258
AfaI GTAC 2 cut(s) 15, 338
AfeI AGCGCT 1 cut(s) 303
AgsI TTSAA 1 cut(s) 268
AjuI GAANNNNNNNTTGG 2 cut(s) 230, 262
AleI CACNNNNGTG 1 cut(s) 281
AluBI AGCT 1 cut(s) 80
AluI AGCT 1 cut(s) 80
AlwI GGATC 1 cut(s) 258
AlwNI CAGNNNCTG 1 cut(s) 83
Aor51HI AGCGCT 1 cut(s) 303
ApeKI GCWGC 3 cut(s) 74, 77, 80
Asp700I GAANNNNTTC 1 cut(s) 272
AspLEI GCGC 1 cut(s) 304
BbvI GCAGC 3 cut(s) 61, 67, 89
BccI CCATC 2 cut(s) 52, 287
BclI TGATCA 1 cut(s) 285
BfaI CTAG 1 cut(s) 92
BfmI CTRYAG 2 cut(s) 75, 84
BfoI RGCGCY 1 cut(s) 305
BisI GCNGC 3 cut(s) 75, 78, 81
BlsI GCNGC 3 cut(s) 76, 79, 82
BpuEI CTTGAG 1 cut(s) 161
Bsa29I ATCGAT 1 cut(s) 9
BseCI ATCGAT 1 cut(s) 9
BseGI GGATG 2 cut(s) 73, 298
BseRI GAGGAG 1 cut(s) 164
BseXI GCAGC 3 cut(s) 61, 67, 89
BshVI ATCGAT 1 cut(s) 9
Bsp1407I TGTACA 1 cut(s) 13
Bsp143I GATC 4 cut(s) 144, 225, 250, 285
BspDI ATCGAT 1 cut(s) 9
BspMAI CTGCAG 1 cut(s) 79
BspPI GGATC 1 cut(s) 258
BsrGI TGTACA 1 cut(s) 13
BssMI GATC 4 cut(s) 144, 225, 250, 285
Bst6I CTCTTC 1 cut(s) 216
BstAUI TGTACA 1 cut(s) 13
BstDEI CTNAG 1 cut(s) 348
BstF5I GGATG 2 cut(s) 73, 298
BstH2I RGCGCY 1 cut(s) 305
BstHHI GCGC 1 cut(s) 304
BstKTI GATC 4 cut(s) 147, 228, 253, 288
BstMBI GATC 4 cut(s) 144, 225, 250, 285
BstMWI GCNNNNNNNGC 1 cut(s) 80
BstSFI CTRYAG 2 cut(s) 75, 84
BstV1I GCAGC 3 cut(s) 61, 67, 89
Bsu15I ATCGAT 1 cut(s) 9
BsuTUI ATCGAT 1 cut(s) 9
BtsCI GGATG 2 cut(s) 73, 298
BtsIMutI CAGTG 1 cut(s) 108
CaiI CAGNNNCTG 1 cut(s) 83
CfoI GCGC 1 cut(s) 304
ClaI ATCGAT 1 cut(s) 9
Csp6I GTAC 2 cut(s) 14, 337
CviJI RGCY 3 cut(s) 39, 80, 211
CviKI_1 RGCY 3 cut(s) 39, 80, 211
CviQI GTAC 2 cut(s) 14, 337
DdeI CTNAG 1 cut(s) 348
DpnI GATC 4 cut(s) 146, 227, 252, 287
DpnII GATC 4 cut(s) 144, 225, 250, 285
Eam1104I CTCTTC 1 cut(s) 216
EarI CTCTTC 1 cut(s) 216
Eco47III AGCGCT 1 cut(s) 303
FaiI YATR 6 cut(s) 18, 20, 111, 158, 191, 354
FbaI TGATCA 1 cut(s) 285
FblI GTMKAC 1 cut(s) 30
Fnu4HI GCNGC 3 cut(s) 75, 78, 81
FokI GGATG 2 cut(s) 80, 305
Fsp4HI GCNGC 3 cut(s) 75, 78, 81
FspBI CTAG 1 cut(s) 92
GlaI GCGC 1 cut(s) 303
GluI GCNGC 3 cut(s) 75, 78, 81
HaeII RGCGCY 1 cut(s) 305
HhaI GCGC 1 cut(s) 304
Hin6I GCGC 1 cut(s) 302
HinP1I GCGC 1 cut(s) 302
HincII GTYRAC 1 cut(s) 310
HindII GTYRAC 1 cut(s) 310
HinfI GANTC 2 cut(s) 51, 238
Hpy166II GTNNAC 2 cut(s) 31, 310
Hpy188I TCNGA 1 cut(s) 134
Hpy188III TCNNGA 4 cut(s) 55, 178, 229, 242
Hpy8I GTNNAC 2 cut(s) 31, 310
HpyCH4V TGCA 1 cut(s) 77
HpyF10VI GCNNNNNNNGC 1 cut(s) 80
HpyF3I CTNAG 1 cut(s) 348
HspAI GCGC 1 cut(s) 302
Ksp22I TGATCA 1 cut(s) 285
Kzo9I GATC 4 cut(s) 144, 225, 250, 285
LpnPI CCDG 2 cut(s) 225, 270
Lsp1109I GCAGC 3 cut(s) 61, 67, 89
MaeI CTAG 1 cut(s) 92
MalI GATC 4 cut(s) 146, 227, 252, 287
MboI GATC 4 cut(s) 144, 225, 250, 285
MboII GAAGA 2 cut(s) 205, 233
MluCI AATT 3 cut(s) 203, 245, 263
MnlI CCTC 5 cut(s) 115, 182, 185, 253, 316
MroXI GAANNNNTTC 1 cut(s) 272
MseI TTAA 2 cut(s) 165, 317
MslI CAYNNNNRTG 1 cut(s) 281
MspA1I CMGCKG 1 cut(s) 80
MwoI GCNNNNNNNGC 1 cut(s) 80
NdeII GATC 4 cut(s) 144, 225, 250, 285
OliI CACNNNNGTG 1 cut(s) 281
PdmI GAANNNNTTC 1 cut(s) 272
PfeI GAWTC 2 cut(s) 51, 238
PkrI GCNGC 3 cut(s) 76, 79, 82
PstI CTGCAG 1 cut(s) 79
PstNI CAGNNNCTG 1 cut(s) 83
PvuII CAGCTG 1 cut(s) 80
RsaI GTAC 2 cut(s) 15, 338
RsaNI GTAC 2 cut(s) 14, 337
RseI CAYNNNNRTG 1 cut(s) 281
SaqAI TTAA 2 cut(s) 165, 317
SatI GCNGC 3 cut(s) 75, 78, 81
Sau3AI GATC 4 cut(s) 144, 225, 250, 285
SetI ASST 4 cut(s) 82, 156, 327, 349
SfcI CTRYAG 2 cut(s) 75, 84
SmiMI CAYNNNNRTG 1 cut(s) 281
SmlI CTYRAG 1 cut(s) 176
SmoI CTYRAG 1 cut(s) 176
Sse9I AATT 3 cut(s) 203, 245, 263
SspMI CTAG 1 cut(s) 92
TaqI TCGA 3 cut(s) 9, 147, 228
TasI AATT 3 cut(s) 203, 245, 263
TatI WGTACW 1 cut(s) 13
TfiI GAWTC 2 cut(s) 51, 238
Tru1I TTAA 2 cut(s) 165, 317
Tru9I TTAA 2 cut(s) 165, 317
TscAI CASTG 1 cut(s) 108
TseI GCWGC 3 cut(s) 74, 77, 80
TspDTI ATGAA 1 cut(s) 206
TspRI CASTG 1 cut(s) 108
XmiI GTMKAC 1 cut(s) 30
XmnI GAANNNNTTC 1 cut(s) 272
XspI CTAG 1 cut(s) 92
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.