Rh3BG024400
ERF Family

Belongs to the protein kinase superfamily. Ser Thr protein kinase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0020476
Physical Location & Seq
Forward (+)
1590270 .. 1595485
5216 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG024400.1

Sequence Viewer

Length: 399 bp
ATGTTCGCATCCGATTCGAAATCGTTGTTCATTATAGAGATCTCAATCACAACCAAGTTCTATAGAAGATTCTCTCTCCTTGACACTGTTTCGCAGATTATACTCTCTTTATTATCCAAAACCCAGTTTCGCAGAGTAGCGGATTTTGGAGTAGCTAAGGTGGTTGATGCAACTGAAAAAGGGGCTAAATCCATGTCGGTCATTGCCGGTTCTTGTGGTTACATTACTCTAGAGCGAGCTAGGCGAGCGAAGGGCATGGGCAGGTCGGTGACTGGGCTAGGTGGAGTGAGGCGTGCAGGTTGCTACAGGCGTGTGCTGAAGCCGTGCTTACTGCTGTTATCTGCGCAGGCGGAGCCGCGCTGGGCTGTGGTTGCGGCCGAATGCGGGGCTAGCAGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_8 Pkinase

Protein Analysis

132

Amino Acids

14.37

Weight (kDa)

10.39

Isoelectric Point (pI)

50.99

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0020476)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr1g0373161
rosa_samantha Rh3AG023700 Rh3BG024400 Rh3DG024300 Rh4DG090000 Rh5BG377900

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 345
Acc36I ACCTGC 2 cut(s) 252, 287
AccII CGCG 1 cut(s) 358
AciI CCGC 5 cut(s) 140, 350, 356, 374, 384
AcoI YGGCCR 1 cut(s) 375
AcuI CTGAAG 1 cut(s) 338
AfiI CCNNNNNNNGG 1 cut(s) 384
AluBI AGCT 2 cut(s) 155, 239
AluI AGCT 2 cut(s) 155, 239
AoxI GGCC 1 cut(s) 375
AspLEI GCGC 2 cut(s) 346, 360
AsuHPI GGTGA 1 cut(s) 280
AsuII TTCGAA 1 cut(s) 17
AsuNHI GCTAGC 1 cut(s) 389
BceAI ACGGC 1 cut(s) 307
BcgI CGANNNNNNTGC 1 cut(s) 31
BfaI CTAG 4 cut(s) 230, 240, 278, 390
BfmI CTRYAG 2 cut(s) 61, 304
BfuAI ACCTGC 2 cut(s) 252, 287
BglII AGATCT 1 cut(s) 39
BisI GCNGC 2 cut(s) 356, 375
BlsI GCNGC 2 cut(s) 357, 376
BmiI GGNNCC 1 cut(s) 354
BmrI ACTGGG 2 cut(s) 118, 282
BmsI GCATC 2 cut(s) 17, 157
BmtI GCTAGC 1 cut(s) 393
BmuI ACTGGG 2 cut(s) 118, 282
Bpu10I CCTNAGC 1 cut(s) 156
Bpu14I TTCGAA 1 cut(s) 17
BsaBI GATNNNNATC 1 cut(s) 44
Bsc4I CCNNNNNNNGG 1 cut(s) 384
Bse118I RCCGGY 1 cut(s) 206
Bse1I ACTGG 2 cut(s) 124, 277
Bse3DI GCAATG 1 cut(s) 201
Bse8I GATNNNNATC 1 cut(s) 44
BseGI GGATG 1 cut(s) 8
BseJI GATNNNNATC 1 cut(s) 44
BseLI CCNNNNNNNGG 1 cut(s) 384
BseMI GCAATG 1 cut(s) 201
BseNI ACTGG 2 cut(s) 124, 277
BseX3I CGGCCG 1 cut(s) 375
BseYI CCCAGC 1 cut(s) 360
BsgI GTGCAG 1 cut(s) 315
Bsh1236I CGCG 1 cut(s) 358
Bsh1285I CGRYCG 1 cut(s) 378
BshFI GGCC 1 cut(s) 377
BsiEI CGRYCG 1 cut(s) 378
BsiSI CCGG 1 cut(s) 207
BslI CCNNNNNNNGG 1 cut(s) 384
BsmI GAATGC 1 cut(s) 386
BsnI GGCC 1 cut(s) 377
Bsp119I TTCGAA 1 cut(s) 17
Bsp143I GATC 1 cut(s) 39
BspACI CCGC 5 cut(s) 140, 350, 356, 374, 384
BspANI GGCC 1 cut(s) 377
BspFNI CGCG 1 cut(s) 358
BspLI GGNNCC 1 cut(s) 354
BspMI ACCTGC 2 cut(s) 252, 287
BspOI GCTAGC 1 cut(s) 393
BspT104I TTCGAA 1 cut(s) 17
BsrDI GCAATG 1 cut(s) 201
BsrFI RCCGGY 1 cut(s) 206
BsrI ACTGG 2 cut(s) 124, 277
BssAI RCCGGY 1 cut(s) 206
BssMI GATC 1 cut(s) 39
Bst4CI ACNGT 1 cut(s) 88
BstBI TTCGAA 1 cut(s) 17
BstC8I GCNNGC 5 cut(s) 237, 246, 294, 348, 391
BstDEI CTNAG 1 cut(s) 156
BstF5I GGATG 1 cut(s) 8
BstFNI CGCG 1 cut(s) 358
BstHHI GCGC 2 cut(s) 346, 360
BstKTI GATC 1 cut(s) 42
BstMBI GATC 1 cut(s) 39
BstMCI CGRYCG 1 cut(s) 378
BstMWI GCNNNNNNNGC 5 cut(s) 241, 245, 352, 371, 390
BstSFI CTRYAG 2 cut(s) 61, 304
BstUI CGCG 1 cut(s) 358
BstX2I RGATCY 1 cut(s) 39
BstYI RGATCY 1 cut(s) 39
BstZI CGGCCG 1 cut(s) 375
BsuRI GGCC 1 cut(s) 377
BtsCI GGATG 1 cut(s) 8
BtsIMutI CAGTG 1 cut(s) 84
BveI ACCTGC 2 cut(s) 252, 287
Cac8I GCNNGC 5 cut(s) 237, 246, 294, 348, 391
CfoI GCGC 2 cut(s) 346, 360
Cfr10I RCCGGY 1 cut(s) 206
CviAII CATG 2 cut(s) 193, 256
CviJI RGCY 9 cut(s) 155, 185, 239, 277, 322, 355, 365, 377, 389
CviKI_1 RGCY 9 cut(s) 155, 185, 239, 277, 322, 355, 365, 377, 389
DdeI CTNAG 1 cut(s) 156
DpnI GATC 1 cut(s) 41
DpnII GATC 1 cut(s) 39
EaeI YGGCCR 1 cut(s) 375
EagI CGGCCG 1 cut(s) 375
EciI GGCGGA 1 cut(s) 365
EclXI CGGCCG 1 cut(s) 375
Eco52I CGGCCG 1 cut(s) 375
Eco57I CTGAAG 1 cut(s) 338
FaeI CATG 2 cut(s) 196, 259
FaiI YATR 5 cut(s) 35, 63, 101, 194, 257
FalI AAGNNNNNCTT 2 cut(s) 311, 343
FatI CATG 2 cut(s) 192, 255
FauI CCCGC 1 cut(s) 377
Fnu4HI GCNGC 2 cut(s) 356, 375
Fsp4HI GCNGC 2 cut(s) 356, 375
FspBI CTAG 4 cut(s) 230, 240, 278, 390
FspI TGCGCA 1 cut(s) 345
GlaI GCGC 2 cut(s) 345, 359
GluI GCNGC 2 cut(s) 356, 375
GsaI CCCAGC 1 cut(s) 364
HaeIII GGCC 1 cut(s) 377
HapII CCGG 1 cut(s) 207
HhaI GCGC 2 cut(s) 346, 360
Hin1II CATG 2 cut(s) 196, 259
Hin6I GCGC 2 cut(s) 344, 358
HinP1I GCGC 2 cut(s) 344, 358
HinfI GANTC 2 cut(s) 14, 69
HpaII CCGG 1 cut(s) 207
HphI GGTGA 1 cut(s) 280
Hpy188I TCNGA 1 cut(s) 13
Hpy188III TCNNGA 1 cut(s) 230
HpyAV CCTTC 1 cut(s) 244
HpyCH4III ACNGT 1 cut(s) 88
HpyCH4V TGCA 2 cut(s) 170, 296
HpyF10VI GCNNNNNNNGC 5 cut(s) 241, 245, 352, 371, 390
HpyF3I CTNAG 1 cut(s) 156
Hsp92II CATG 2 cut(s) 196, 259
HspAI GCGC 2 cut(s) 344, 358
Kzo9I GATC 1 cut(s) 39
LmnI GCTCC 1 cut(s) 352
LpnPI CCDG 8 cut(s) 137, 220, 247, 258, 282, 292, 332, 346
LweI GCATC 2 cut(s) 17, 157
MaeI CTAG 4 cut(s) 230, 240, 278, 390
MaeIII GTNAC 2 cut(s) 218, 268
MalI GATC 1 cut(s) 41
MboI GATC 1 cut(s) 39
MboII GAAGA 1 cut(s) 78
MflI RGATCY 1 cut(s) 39
MnlI CCTC 1 cut(s) 282
MspI CCGG 1 cut(s) 207
Mva1269I GAATGC 1 cut(s) 386
MvnI CGCG 1 cut(s) 358
MwoI GCNNNNNNNGC 5 cut(s) 241, 245, 352, 371, 390
NdeII GATC 1 cut(s) 39
NheI GCTAGC 1 cut(s) 389
NlaIII CATG 2 cut(s) 196, 259
NlaIV GGNNCC 1 cut(s) 354
NmuCI GTSAC 1 cut(s) 268
NsbI TGCGCA 1 cut(s) 345
NspV TTCGAA 1 cut(s) 17
PctI GAATGC 1 cut(s) 386
PfeI GAWTC 2 cut(s) 14, 69
PkrI GCNGC 2 cut(s) 357, 376
PspFI CCCAGC 1 cut(s) 360
PspN4I GGNNCC 1 cut(s) 354
PsuI RGATCY 1 cut(s) 39
SatI GCNGC 2 cut(s) 356, 375
Sau3AI GATC 1 cut(s) 39
SetI ASST 6 cut(s) 157, 162, 241, 266, 283, 301
SfaNI GCATC 2 cut(s) 17, 157
SfcI CTRYAG 2 cut(s) 61, 304
SfuI TTCGAA 1 cut(s) 17
SsiI CCGC 5 cut(s) 140, 350, 356, 374, 384
SspMI CTAG 4 cut(s) 230, 240, 278, 390
TaaI ACNGT 1 cut(s) 88
TaqI TCGA 1 cut(s) 17
TaqII GACCGA 1 cut(s) 187
TauI GCSGC 2 cut(s) 358, 377
TfiI GAWTC 2 cut(s) 14, 69
TscAI CASTG 1 cut(s) 91
TseFI GTSAC 1 cut(s) 268
Tsp45I GTSAC 1 cut(s) 268
TspDTI ATGAA 1 cut(s) 19
TspRI CASTG 1 cut(s) 91
XbaI TCTAGA 1 cut(s) 229
XspI CTAG 4 cut(s) 230, 240, 278, 390
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.