Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0020476

Physical Location & Seq

Genomic Coordinates Forward (+)

59872024 .. 59873233

Gene Structure 1210 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG377900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 267 bp

ATGCTCCCAACTCTTCGATTCCTTAATGTCATGTTCGCATCCGATTCGAAATCATTGTTCATTATAGAGATCTCAATCACAACCAAGTTCTATAGAAGATTCTCTCTCCTCGACGCTGTTTCGCAGATTATACTCTCTCTATTATCCAAAACCCAGTTTCGCAGTCAGTACTTGTCAGAGCTGCTAGCAGAGCATCAAAAGTTTGGACTTTTCATGCAAGTGCTTCCGATATGTAGCCGACTCTTGAATCAAGATGGCTTACAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003677 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0008150 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0048519 GO:0048577 GO:0048579 GO:0048580 GO:0048581 GO:0048583 GO:0048585 GO:0048586 GO:0048587 GO:0050789 GO:0050793 GO:0051093 GO:0051239 GO:0051241 GO:0065007 GO:0097159 GO:1901363 GO:2000026 GO:2000028 GO:2000241 GO:2000242

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

KH_1 STAR_dimer

Protein Analysis

88

Amino Acids

10.2

Weight (kDa)

9.43

Isoelectric Point (pI)

49.95

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
STAR_dimer	PF16544	50 - 84	5.5e-09	Homodimerisation region of STAR domain protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0020476)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0373161
rosa_samantha	Rh3AG023700 Rh3BG024400 Rh3DG024300 Rh4DG090000 Rh5BG377900

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AfaI	GTAC	1 cut(s)	170
AgsI	TTSAA	1 cut(s)	247
AluBI	AGCT	1 cut(s)	181
AluI	AGCT	1 cut(s)	181
ApeKI	GCWGC	1 cut(s)	181
AsuII	TTCGAA	1 cut(s)	47
AsuNHI	GCTAGC	1 cut(s)	184
BbvI	GCAGC	1 cut(s)	168
BccI	CCATC	1 cut(s)	248
BcgI	CGANNNNNNTGC	2 cut(s)	27, 61
BfaI	CTAG	1 cut(s)	185
BfmI	CTRYAG	1 cut(s)	91
BglII	AGATCT	1 cut(s)	69
BisI	GCNGC	1 cut(s)	182
BlsI	GCNGC	1 cut(s)	183
BmcAI	AGTACT	1 cut(s)	170
BmrI	ACTGGG	1 cut(s)	148
BmsI	GCATC	2 cut(s)	47, 202
BmtI	GCTAGC	1 cut(s)	188
BmuI	ACTGGG	1 cut(s)	148
Bpu14I	TTCGAA	1 cut(s)	47
BsaBI	GATNNNNATC	1 cut(s)	74
Bse1I	ACTGG	1 cut(s)	154
Bse8I	GATNNNNATC	1 cut(s)	74
BseGI	GGATG	1 cut(s)	38
BseJI	GATNNNNATC	1 cut(s)	74
BseNI	ACTGG	1 cut(s)	154
BseRI	GAGGAG	1 cut(s)	98
BseXI	GCAGC	1 cut(s)	168
Bsp119I	TTCGAA	1 cut(s)	47
Bsp143I	GATC	1 cut(s)	69
BspOI	GCTAGC	1 cut(s)	188
BspT104I	TTCGAA	1 cut(s)	47
BsrI	ACTGG	1 cut(s)	154
BssMI	GATC	1 cut(s)	69
Bst6I	CTCTTC	1 cut(s)	18
BstBI	TTCGAA	1 cut(s)	47
BstC8I	GCNNGC	1 cut(s)	186
BstF5I	GGATG	1 cut(s)	38
BstKTI	GATC	1 cut(s)	72
BstMBI	GATC	1 cut(s)	69
BstMWI	GCNNNNNNNGC	1 cut(s)	190
BstSFI	CTRYAG	1 cut(s)	91
BstV1I	GCAGC	1 cut(s)	168
BstX2I	RGATCY	1 cut(s)	69
BstYI	RGATCY	1 cut(s)	69
BtsCI	GGATG	1 cut(s)	38
Cac8I	GCNNGC	1 cut(s)	186
CseI	GACGC	1 cut(s)	122
Csp6I	GTAC	1 cut(s)	169
CviAII	CATG	2 cut(s)	31, 214
CviJI	RGCY	3 cut(s)	181, 237, 258
CviKI_1	RGCY	3 cut(s)	181, 237, 258
CviQI	GTAC	1 cut(s)	169
DpnI	GATC	1 cut(s)	71
DpnII	GATC	1 cut(s)	69
Eam1104I	CTCTTC	1 cut(s)	18
EarI	CTCTTC	1 cut(s)	18
FaeI	CATG	2 cut(s)	34, 217
FaiI	YATR	6 cut(s)	32, 65, 93, 131, 215, 232
FatI	CATG	2 cut(s)	30, 213
Fnu4HI	GCNGC	1 cut(s)	182
FokI	GGATG	1 cut(s)	25
Fsp4HI	GCNGC	1 cut(s)	182
FspBI	CTAG	1 cut(s)	185
GluI	GCNGC	1 cut(s)	182
HgaI	GACGC	1 cut(s)	122
Hin1II	CATG	2 cut(s)	34, 217
HinfI	GANTC	5 cut(s)	18, 44, 99, 240, 247
Hpy188I	TCNGA	3 cut(s)	43, 178, 228
Hpy188III	TCNNGA	2 cut(s)	244, 251
Hpy99I	CGWCG	1 cut(s)	116
HpyCH4V	TGCA	1 cut(s)	217
HpyF10VI	GCNNNNNNNGC	1 cut(s)	190
Hsp92II	CATG	2 cut(s)	34, 217
Kzo9I	GATC	1 cut(s)	69
LmnI	GCTCC	1 cut(s)	9
LpnPI	CCDG	1 cut(s)	167
Lsp1109I	GCAGC	1 cut(s)	168
LweI	GCATC	2 cut(s)	47, 202
MaeI	CTAG	1 cut(s)	185
MalI	GATC	1 cut(s)	71
MboI	GATC	1 cut(s)	69
MboII	GAAGA	2 cut(s)	5, 108
MflI	RGATCY	1 cut(s)	69
MlyI	GAGTC	1 cut(s)	234
MnlI	CCTC	1 cut(s)	119
MseI	TTAA	1 cut(s)	24
MslI	CAYNNNNRTG	1 cut(s)	218
MwoI	GCNNNNNNNGC	1 cut(s)	190
NdeII	GATC	1 cut(s)	69
NheI	GCTAGC	1 cut(s)	184
NlaIII	CATG	2 cut(s)	34, 217
NspV	TTCGAA	1 cut(s)	47
PfeI	GAWTC	4 cut(s)	18, 44, 99, 247
PkrI	GCNGC	1 cut(s)	183
PleI	GAGTC	1 cut(s)	234
PpsI	GAGTC	1 cut(s)	234
PsuI	RGATCY	1 cut(s)	69
RsaI	GTAC	1 cut(s)	170
RsaNI	GTAC	1 cut(s)	169
RseI	CAYNNNNRTG	1 cut(s)	218
SaqAI	TTAA	1 cut(s)	24
SatI	GCNGC	1 cut(s)	182
Sau3AI	GATC	1 cut(s)	69
ScaI	AGTACT	1 cut(s)	170
SchI	GAGTC	1 cut(s)	234
SetI	ASST	1 cut(s)	183
SfaNI	GCATC	2 cut(s)	47, 202
SfcI	CTRYAG	1 cut(s)	91
SfuI	TTCGAA	1 cut(s)	47
SmiMI	CAYNNNNRTG	1 cut(s)	218
SspMI	CTAG	1 cut(s)	185
TaqI	TCGA	3 cut(s)	16, 47, 111
TatI	WGTACW	1 cut(s)	168
TfiI	GAWTC	4 cut(s)	18, 44, 99, 247
Tru1I	TTAA	1 cut(s)	24
Tru9I	TTAA	1 cut(s)	24
TseI	GCWGC	1 cut(s)	181
TspDTI	ATGAA	2 cut(s)	49, 202
XspI	CTAG	1 cut(s)	185
ZrmI	AGTACT	1 cut(s)	170

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.