Rh3BG235600

ATP-dependent RNA helicase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0020527
Physical Location & Seq
Reverse (-)
22062319 .. 22063308
990 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG235600.1

Sequence Viewer

Length: 477 bp
ATGGTTCTTCCCCTGCATGGGTCAATGCCTACTGTCAATCAACGAGAAATATTTGATCGTCCTCCCACTAACAAAAGAAAAATTGTGCTGGCAACAAACATTGCAGAGAGCAGTATTACCATAGATGATGTCGTGTATGTCATAGACTGTCAAAAGGCAAAGGAAACGAGTTATGATGCTTTAAACAAGTTGGCTTGTCTATTACCATCATGTATTTCAAAGGCTTCAGCACATCAGAGACGAGGGCGTGCTGGCCGTGTCCAACCGGGAGTTTGTTACAGACTATATCCAAAAATGATTCACGATGCAATGCTCCAATATCAGTTACCTGAAATTCTCTGGACACCCTTGCAAGAGTTATGCCTCCATATAAAGAGTTTGCAGCTTGGAGTTGTTGGATCATTTTTGGCAAAGGCACTTCAACCACCAGATTCTCTTGCAGTTCAAAATGCCATCGAACTTCTCAAAACTATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000976 GO:0000977 GO:0000978 GO:0000987 GO:0001012 GO:0001067 GO:0001503 GO:0001817 GO:0001819 GO:0002151 GO:0002791 GO:0002793 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003697 GO:0003723 GO:0003724 GO:0003725 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005829 GO:0006139 GO:0006355 GO:0006357 GO:0006396 GO:0006725 GO:0006807 GO:0008026 GO:0008094 GO:0008150 GO:0008152 GO:0008186 GO:0009889 GO:0009891 GO:0009892 GO:0009893 GO:0009894 GO:0009895 GO:0009987 GO:0010467 GO:0010468 GO:0010501 GO:0010556 GO:0010557 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010638 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019219 GO:0019222 GO:0019899 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031328 GO:0031329 GO:0031330 GO:0032204 GO:0032206 GO:0032479 GO:0032481 GO:0032501 GO:0032647 GO:0032727 GO:0032879 GO:0032880 GO:0033043 GO:0033044 GO:0034641 GO:0042623 GO:0042826 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043487 GO:0043489 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0045893 GO:0045934 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050707 GO:0050708 GO:0050714 GO:0050715 GO:0050789 GO:0050794 GO:0051046 GO:0051047 GO:0051049 GO:0051050 GO:0051052 GO:0051054 GO:0051128 GO:0051130 GO:0051171 GO:0051172 GO:0051173 GO:0051222 GO:0051223 GO:0051239 GO:0051240 GO:0051252 GO:0051253 GO:0051254 GO:0051880 GO:0060255 GO:0065007 GO:0065008 GO:0070034 GO:0070035 GO:0070201 GO:0071704 GO:0080090 GO:0090087 GO:0090304 GO:0090669 GO:0097159 GO:0140098 GO:1901360 GO:1901363 GO:1902369 GO:1902680 GO:1902739 GO:1902741 GO:1903506 GO:1903508 GO:1903530 GO:1903532 GO:1904951 GO:1990837 GO:2000112 GO:2001141 GO:2001252
KEGG Pathways
Metabolic & Signaling
ko03018 map03018
Pfam Domains
Protein Families
DEAD HA2 Helicase_C OB_NTP_bind

Protein Analysis

158

Amino Acids

17.6

Weight (kDa)

9.02

Isoelectric Point (pI)

61.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Helicase_C PF00271 2 - 87 8.8e-13 Helicase conserved C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0020527)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr3g0476271
rosa_roxburghii Rroxscaffold_6G00405430
rosa_samantha Rh3AG204300 Rh3BG235600 Rh3BG235700 Rh3DG230000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 406
AcoI YGGCCR 1 cut(s) 253
AcsI RAATTY 1 cut(s) 333
AcuI CTGAAG 1 cut(s) 210
AfiI CCNNNNNNNGG 2 cut(s) 17, 18
AgsI TTSAA 3 cut(s) 219, 422, 446
AluBI AGCT 1 cut(s) 385
AluI AGCT 1 cut(s) 385
Alw26I GTCTC 1 cut(s) 232
AlwI GGATC 1 cut(s) 406
AoxI GGCC 1 cut(s) 253
ApeKI GCWGC 1 cut(s) 382
ApoI RAATTY 1 cut(s) 333
AsuC2I CCSGG 1 cut(s) 267
BbvI GCAGC 1 cut(s) 394
BccI CCATC 2 cut(s) 214, 461
BceAI ACGGC 1 cut(s) 240
BcnI CCSGG 1 cut(s) 267
BcoDI GTCTC 1 cut(s) 232
BisI GCNGC 1 cut(s) 383
BlsI GCNGC 1 cut(s) 384
Bme1390I CCNGG 1 cut(s) 267
BmrFI CCNGG 1 cut(s) 267
BmsI GCATC 2 cut(s) 166, 295
BpuMI CCSGG 1 cut(s) 267
Bsc4I CCNNNNNNNGG 2 cut(s) 17, 18
Bse3DI GCAATG 2 cut(s) 99, 315
BseLI CCNNNNNNNGG 2 cut(s) 17, 18
BseMI GCAATG 2 cut(s) 99, 315
BseXI GCAGC 1 cut(s) 394
BshFI GGCC 1 cut(s) 255
BsiSI CCGG 1 cut(s) 266
BslI CCNNNNNNNGG 2 cut(s) 17, 18
BsmAI GTCTC 1 cut(s) 232
BsmBI CGTCTC 1 cut(s) 232
BsnI GGCC 1 cut(s) 255
Bsp143I GATC 2 cut(s) 55, 398
BspANI GGCC 1 cut(s) 255
BspPI GGATC 1 cut(s) 406
BsrDI GCAATG 2 cut(s) 99, 315
BssMI GATC 2 cut(s) 55, 398
Bst4CI ACNGT 2 cut(s) 34, 149
BstC8I GCNNGC 3 cut(s) 90, 249, 253
BstKTI GATC 2 cut(s) 58, 401
BstMAI GTCTC 1 cut(s) 232
BstMBI GATC 2 cut(s) 55, 398
BstSCI CCNGG 1 cut(s) 265
BstV1I GCAGC 1 cut(s) 394
BsuRI GGCC 1 cut(s) 255
Cac8I GCNNGC 3 cut(s) 90, 249, 253
CviAII CATG 2 cut(s) 17, 210
CviJI RGCY 4 cut(s) 194, 224, 255, 385
CviKI_1 RGCY 4 cut(s) 194, 224, 255, 385
DpnI GATC 2 cut(s) 57, 400
DpnII GATC 2 cut(s) 55, 398
DraI TTTAAA 1 cut(s) 183
EaeI YGGCCR 1 cut(s) 253
Eco57I CTGAAG 1 cut(s) 210
Esp3I CGTCTC 1 cut(s) 232
FaeI CATG 2 cut(s) 20, 213
FatI CATG 2 cut(s) 16, 209
Fnu4HI GCNGC 1 cut(s) 383
Fsp4HI GCNGC 1 cut(s) 383
GluI GCNGC 1 cut(s) 383
HaeIII GGCC 1 cut(s) 255
HapII CCGG 1 cut(s) 266
Hin1II CATG 2 cut(s) 20, 213
HinfI GANTC 2 cut(s) 298, 431
HpaII CCGG 1 cut(s) 266
Hpy188I TCNGA 1 cut(s) 237
Hpy188III TCNNGA 2 cut(s) 302, 340
HpyCH4III ACNGT 2 cut(s) 34, 149
HpyCH4V TGCA 6 cut(s) 16, 104, 308, 352, 382, 440
Hsp92II CATG 2 cut(s) 20, 213
Kzo9I GATC 2 cut(s) 55, 398
LmnI GCTCC 1 cut(s) 318
LpnPI CCDG 7 cut(s) 26, 74, 237, 279, 325, 342, 441
Lsp1109I GCAGC 1 cut(s) 394
LweI GCATC 2 cut(s) 166, 295
MaeIII GTNAC 2 cut(s) 275, 324
MalI GATC 2 cut(s) 57, 400
MboI GATC 2 cut(s) 55, 398
MluCI AATT 2 cut(s) 81, 333
MmeI TCCRAC 2 cut(s) 286, 376
MnlI CCTC 3 cut(s) 72, 236, 374
MseI TTAA 1 cut(s) 182
MspI CCGG 1 cut(s) 266
MspR9I CCNGG 1 cut(s) 267
NciI CCSGG 1 cut(s) 267
NdeII GATC 2 cut(s) 55, 398
NlaIII CATG 2 cut(s) 20, 213
PfeI GAWTC 2 cut(s) 298, 431
PkrI GCNGC 1 cut(s) 384
SaqAI TTAA 1 cut(s) 182
SatI GCNGC 1 cut(s) 383
Sau3AI GATC 2 cut(s) 55, 398
ScrFI CCNGG 1 cut(s) 267
SetI ASST 2 cut(s) 331, 387
SfaNI GCATC 2 cut(s) 166, 295
Sse9I AATT 2 cut(s) 81, 333
SspI AATATT 1 cut(s) 51
StyD4I CCNGG 1 cut(s) 265
TaaI ACNGT 2 cut(s) 34, 149
TaqI TCGA 1 cut(s) 456
TasI AATT 2 cut(s) 81, 333
TfiI GAWTC 2 cut(s) 298, 431
Tru1I TTAA 1 cut(s) 182
Tru9I TTAA 1 cut(s) 182
TseI GCWGC 1 cut(s) 382
XapI RAATTY 1 cut(s) 333
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.