Rh3BG235700

ATP-dependent RNA helicase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
OG0020527
Physical Location & Seq
Reverse (-)
22063763 .. 22064135
373 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG235700.1

Sequence Viewer

Length: 234 bp
ATGGCAGGGTTCCCTGTGGCAGAGCTATTTCTAGAAGATGTTTTGGAGAAAACTCATTATATAGTCAAGTCAGAGTCCGACAAGATGGAGAGGGGAAATTCAGGAGAAGGAGACAGCAAGACTCCAAGAACAATCCTTAAGGTTTTCCGGTTTATTGCTTCAGCAGTTCCGACATTATTTCTGCAGGATGTTGATATTGATATTCGCTATAAAAGTTACAGCACATCTACATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000976 GO:0000977 GO:0000978 GO:0000987 GO:0001012 GO:0001067 GO:0001503 GO:0001817 GO:0001819 GO:0002151 GO:0002791 GO:0002793 GO:0003674 GO:0003676 GO:0003677 GO:0003690 GO:0003697 GO:0003723 GO:0003724 GO:0003725 GO:0003824 GO:0004004 GO:0004386 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005829 GO:0006139 GO:0006355 GO:0006357 GO:0006396 GO:0006725 GO:0006807 GO:0008026 GO:0008094 GO:0008150 GO:0008152 GO:0008186 GO:0009889 GO:0009891 GO:0009892 GO:0009893 GO:0009894 GO:0009895 GO:0009987 GO:0010467 GO:0010468 GO:0010501 GO:0010556 GO:0010557 GO:0010604 GO:0010605 GO:0010608 GO:0010628 GO:0010638 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0019219 GO:0019222 GO:0019899 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031328 GO:0031329 GO:0031330 GO:0032204 GO:0032206 GO:0032479 GO:0032481 GO:0032501 GO:0032647 GO:0032727 GO:0032879 GO:0032880 GO:0033043 GO:0033044 GO:0034641 GO:0042623 GO:0042826 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043487 GO:0043489 GO:0043565 GO:0044212 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0045893 GO:0045934 GO:0045935 GO:0045944 GO:0046483 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0050707 GO:0050708 GO:0050714 GO:0050715 GO:0050789 GO:0050794 GO:0051046 GO:0051047 GO:0051049 GO:0051050 GO:0051052 GO:0051054 GO:0051128 GO:0051130 GO:0051171 GO:0051172 GO:0051173 GO:0051222 GO:0051223 GO:0051239 GO:0051240 GO:0051252 GO:0051253 GO:0051254 GO:0051880 GO:0060255 GO:0065007 GO:0065008 GO:0070034 GO:0070035 GO:0070201 GO:0071704 GO:0080090 GO:0090087 GO:0090304 GO:0090669 GO:0097159 GO:0140098 GO:1901360 GO:1901363 GO:1902369 GO:1902680 GO:1902739 GO:1902741 GO:1903506 GO:1903508 GO:1903530 GO:1903532 GO:1904951 GO:1990837 GO:2000112 GO:2001141 GO:2001252
KEGG Pathways
Metabolic & Signaling
ko03018 map03018
Pfam Domains
Protein Families
DEAD HA2 Helicase_C OB_NTP_bind

Protein Analysis

77

Amino Acids

8.69

Weight (kDa)

5.26

Isoelectric Point (pI)

36.28

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0020527)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr3g0476271
rosa_roxburghii Rroxscaffold_6G00405430
rosa_samantha Rh3AG204300 Rh3BG235600 Rh3BG235700 Rh3DG230000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 97
AcuI CTGAAG 1 cut(s) 144
AflII CTTAAG 1 cut(s) 137
AluBI AGCT 1 cut(s) 25
AluI AGCT 1 cut(s) 25
Alw26I GTCTC 1 cut(s) 105
ApoI RAATTY 1 cut(s) 97
BccI CCATC 1 cut(s) 79
BcoDI GTCTC 1 cut(s) 105
BfaI CTAG 1 cut(s) 32
BfmI CTRYAG 1 cut(s) 182
BfrI CTTAAG 1 cut(s) 137
BmiI GGNNCC 1 cut(s) 11
BsaWI WCCGGW 1 cut(s) 147
BseGI GGATG 1 cut(s) 193
BsiSI CCGG 1 cut(s) 148
BsmAI GTCTC 1 cut(s) 105
BspLI GGNNCC 1 cut(s) 11
BspMAI CTGCAG 1 cut(s) 186
BspTI CTTAAG 1 cut(s) 137
BstAFI CTTAAG 1 cut(s) 137
BstF5I GGATG 1 cut(s) 193
BstMAI GTCTC 1 cut(s) 105
BstSFI CTRYAG 1 cut(s) 182
BtsCI GGATG 1 cut(s) 193
CviAII CATG 1 cut(s) 231
CviJI RGCY 1 cut(s) 25
CviKI_1 RGCY 1 cut(s) 25
Eco57I CTGAAG 1 cut(s) 144
FaeI CATG 1 cut(s) 234
FaiI YATR 4 cut(s) 60, 62, 210, 232
FatI CATG 1 cut(s) 230
FokI GGATG 1 cut(s) 200
FspBI CTAG 1 cut(s) 32
HapII CCGG 1 cut(s) 148
Hin1II CATG 1 cut(s) 234
HinfI GANTC 2 cut(s) 74, 121
HpaII CCGG 1 cut(s) 148
Hpy188I TCNGA 3 cut(s) 73, 79, 171
Hpy188III TCNNGA 2 cut(s) 32, 102
HpyAV CCTTC 1 cut(s) 101
HpyCH4V TGCA 1 cut(s) 184
Hsp92II CATG 1 cut(s) 234
LpnPI CCDG 4 cut(s) 27, 87, 161, 170
MaeI CTAG 1 cut(s) 32
MaeIII GTNAC 1 cut(s) 215
MboII GAAGA 1 cut(s) 47
MluCI AATT 1 cut(s) 97
MlyI GAGTC 2 cut(s) 83, 115
MmeI TCCRAC 2 cut(s) 102, 194
MnlI CCTC 1 cut(s) 84
MseI TTAA 1 cut(s) 138
MslI CAYNNNNRTG 1 cut(s) 229
MspCI CTTAAG 1 cut(s) 137
MspI CCGG 1 cut(s) 148
NlaIII CATG 1 cut(s) 234
NlaIV GGNNCC 1 cut(s) 11
PleI GAGTC 2 cut(s) 82, 115
PpsI GAGTC 2 cut(s) 82, 115
PspN4I GGNNCC 1 cut(s) 11
PstI CTGCAG 1 cut(s) 186
RseI CAYNNNNRTG 1 cut(s) 229
SaqAI TTAA 1 cut(s) 138
SchI GAGTC 2 cut(s) 83, 115
SetI ASST 2 cut(s) 27, 144
SfcI CTRYAG 1 cut(s) 182
SmiMI CAYNNNNRTG 1 cut(s) 229
SmlI CTYRAG 1 cut(s) 137
SmoI CTYRAG 1 cut(s) 137
Sse9I AATT 1 cut(s) 97
SspMI CTAG 1 cut(s) 32
TasI AATT 1 cut(s) 97
Tru1I TTAA 1 cut(s) 138
Tru9I TTAA 1 cut(s) 138
Vha464I CTTAAG 1 cut(s) 137
XapI RAATTY 1 cut(s) 97
XbaI TCTAGA 1 cut(s) 31
XspI CTAG 1 cut(s) 32
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.