Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3B

Orthogroup ID

OG0014285

Physical Location & Seq

Genomic Coordinates Forward (+)

24274068 .. 24277601

Gene Structure 3534 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3BG251700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1248 bp

ATGTTGAGCAAGCTAGTTCCGGTGGTTGGAAATGTATGTGAATTGGATCTTGGGCTAGGAGACGATATAGCTGCTTTGATTGCTAAAGAAGTTGATGTTGTTATAAATTCTGCAGCTAACACGACATTTCATGAAAGATATGATGTAGCTTTAGATATAAACACAAAAGGACCTTGCCACCTTATGGCCTTTGCAAAGAAGTGCAAGAGACTTAAGCTCTTTCTGCAAGTATCAACAGCATATGTCAATGGACAAAGACAAGGGAGAATCATGGAAAAGCCATTTCATATAGGAGAAAGCATAACAGGAGAGAATTCCACCTCTAATACCCCACCAGGATTCAATCCACTGGATGTTGAAAATGAAATAAAGTTGGCTATGAACTCCAAGGGAGCTTATGAAGATAATGAGGTAGCTCAAAAGCTAAAAGATCTGGGTTTGGAAAGGGCCAGAAAATATGGATGGCAAGATACATATGTGTTCACCAAGGCCATGGGAGAAATGCTGATTGATGATATGAGAGGTGATGTACCAGTAGTCATAATCCGACCTAGTGTCATCGAGAGCACTTGCAAAGAGCCATTTCCTGGATGGATGGAAGGAAATAGGATGATGGATCCAATTGTTTTATACTATGGAAAAGGACAGCTCACAGGTTTTCTAGTAGACCCTAATGGGGTACTTGATGTGGTTCCGGCTGACATGGTTGTTAACGCAACTTTGGCTGCCATTGCAAAGCATGGAATGGCTCAGAAACCAGACATCAATGTCTACCAGATTACTTCATCAGTTGTGAACCCATTAGACTTCCAAGATTTGGCTAGACTGCTGTATGAACATTACAACTCCTCACCCTGCATGGACTCGAAAGGCAGGCCAATCAACGTTCCATCAATGAAGCTCTTCAGCTCCATGGAAGATTTCTCCGCTCACATTTGGAGAGATGCCACTCAACGAAGCGGGTTGACAGCTTTGGCTTCCTCGAATGGGAAGCTGTCTCAGAAACTTGAGACGATGTGCAGAAAGTCAGTAGAGCAAGCAAAGTACTTGGCTAGTATTTATGAGCCTTATACTTTCTATGGTGGAAGGTTTGATAACAGCAACACTGAGAGACTAATGGAGAGCATGTCTGAAGAAGAAAAGAAGAAGTTTGGATTTGATGTTGGAAGCTTAGATTGGAAAGAGTATATAACAAATGTTCATATTCCAGGTCTTAAAAGGCATGTCTTGAAGGGCAGAGGGGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006163 GO:0006637 GO:0006725 GO:0006732 GO:0006753 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009117 GO:0009150 GO:0009259 GO:0009555 GO:0009653 GO:0009698 GO:0009699 GO:0009987 GO:0010208 GO:0010345 GO:0010584 GO:0010927 GO:0016043 GO:0016491 GO:0016620 GO:0016627 GO:0016628 GO:0016903 GO:0019438 GO:0019637 GO:0019693 GO:0019748 GO:0022607 GO:0030198 GO:0032501 GO:0032502 GO:0032989 GO:0033865 GO:0033875 GO:0034032 GO:0034641 GO:0035336 GO:0035337 GO:0035383 GO:0043062 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044424 GO:0044464 GO:0044550 GO:0045229 GO:0046483 GO:0048229 GO:0048646 GO:0048856 GO:0048869 GO:0051186 GO:0055086 GO:0055114 GO:0071704 GO:0071840 GO:0072521 GO:0080019 GO:0085029 GO:1901135 GO:1901360 GO:1901362 GO:1901564 GO:1901568 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00073 ko04146 ko04212 map00073 map04146 map04212

Pfam Domains

Protein Families

NAD_binding_4 Sterile

Protein Analysis

415

Amino Acids

46.26

Weight (kDa)

6.12

Isoelectric Point (pI)

31.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
NAD_binding_4	PF07993	2 - 240	4.2e-54	Male sterility protein
Sterile	PF03015	338 - 411	7.6e-18	Male sterility protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014285)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G11980
fragaria_vesca	FvH4_6g21540 FvH4_6g21540
malus_domestica	MD14G1051100.v1.1
prunus_persica	Prupe.7G084900_v2.0.a1
pyrus_communis	pycom12g04600
rosa_chinensis	RchiOBHm_Chr3g0478781
rosa_laevigata	RLG00000023627
rosa_rugosa	Rorug03G0167900 Rorug03G0168000 Rorug03G0168000 Rorug03G0168100.1
rosa_samantha	Rh3AG219900 Rh3BG251700 Rh3CG248600 Rh3DG244800
rosa_wichuraiana	Rw3G019750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	104
AasI	GACNNNNNNGTC	1 cut(s)	767
AccB7I	CCANNNNNTGG	3 cut(s)	184, 587, 817
AccBSI	CCGCTC	1 cut(s)	929
AccI	GTMKAC	2 cut(s)	666, 771
AciI	CCGC	2 cut(s)	927, 960
AclI	AACGTT	1 cut(s)	885
AclWI	GGATC	3 cut(s)	54, 611, 624
AcsI	RAATTY	2 cut(s)	106, 313
AcuI	CTGAAG	2 cut(s)	889, 1152
AfaI	GTAC	3 cut(s)	531, 681, 1046
AfiI	CCNNNNNNNGG	6 cut(s)	26, 184, 587, 676, 817, 987
AflII	CTTAAG	1 cut(s)	212
AgsI	TTSAA	3 cut(s)	343, 359, 1231
AhdI	GACNNNNNGTC	1 cut(s)	554
AjnI	CCWGG	3 cut(s)	334, 586, 1207
AjuI	GAANNNNNNNTTGG	4 cut(s)	33, 65, 1159, 1191
Alw21I	GWGCWC	1 cut(s)	569
Alw26I	GTCTC	5 cut(s)	54, 202, 1002, 1004, 1105
AlwI	GGATC	3 cut(s)	54, 611, 624
AoxI	GGCC	4 cut(s)	186, 447, 489, 875
ApeKI	GCWGC	3 cut(s)	71, 113, 725
ApoI	RAATTY	2 cut(s)	106, 313
Asp700I	GAANNNNTTC	1 cut(s)	902
AspS9I	GGNCC	2 cut(s)	170, 447
AsuHPI	GGTGA	3 cut(s)	475, 536, 843
AvaII	GGWCC	1 cut(s)	170
BaeI	ACNNNNGTAYC	2 cut(s)	462, 495
BamHI	GGATCC	1 cut(s)	616
Bbv12I	GWGCWC	1 cut(s)	569
BbvI	GCAGC	3 cut(s)	58, 125, 712
BccI	CCATC	5 cut(s)	456, 585, 589, 607, 898
BcgI	CGANNNNNNTGC	2 cut(s)	53, 87
BciT130I	CCWGG	3 cut(s)	336, 588, 1209
BcoDI	GTCTC	5 cut(s)	54, 202, 1002, 1004, 1105
BfaI	CTAG	6 cut(s)	14, 56, 552, 662, 822, 1053
BfmI	CTRYAG	1 cut(s)	111
BfrI	CTTAAG	1 cut(s)	212
BglII	AGATCT	1 cut(s)	430
BisI	GCNGC	3 cut(s)	72, 114, 726
BlsI	GCNGC	3 cut(s)	73, 115, 727
BmcAI	AGTACT	1 cut(s)	1046
Bme1390I	CCNGG	3 cut(s)	336, 588, 1209
Bme18I	GGWCC	1 cut(s)	170
BmeRI	GACNNNNNGTC	1 cut(s)	554
BmgT120I	GGNCC	2 cut(s)	170, 447
BmiI	GGNNCC	2 cut(s)	618, 693
BmrFI	CCNGG	3 cut(s)	336, 588, 1209
BmsI	GCATC	1 cut(s)	934
BpuEI	CTTGAG	1 cut(s)	1028
BsaJI	CCNNGG	4 cut(s)	387, 486, 492, 912
BsaWI	WCCGGW	1 cut(s)	19
BsaXI	ACNNNNNCTCC	2 cut(s)	1112, 1142
Bsc4I	CCNNNNNNNGG	6 cut(s)	26, 184, 587, 676, 817, 987
Bse1I	ACTGG	2 cut(s)	354, 533
Bse3DI	GCAATG	1 cut(s)	729
BseBI	CCWGG	3 cut(s)	336, 588, 1209
BseDI	CCNNGG	4 cut(s)	387, 486, 492, 912
BseGI	GGATG	5 cut(s)	358, 467, 596, 600, 615
BseLI	CCNNNNNNNGG	6 cut(s)	26, 184, 587, 676, 817, 987
BseMI	GCAATG	1 cut(s)	729
BseMII	CTCAG	3 cut(s)	764, 1013, 1098
BseNI	ACTGG	2 cut(s)	354, 533
BseRI	GAGGAG	1 cut(s)	838
BseXI	GCAGC	3 cut(s)	58, 125, 712
BsgI	GTGCAG	1 cut(s)	1039
BshFI	GGCC	4 cut(s)	188, 449, 491, 877
BsiHKAI	GWGCWC	1 cut(s)	569
BsiSI	CCGG	2 cut(s)	20, 695
BslI	CCNNNNNNNGG	6 cut(s)	26, 184, 587, 676, 817, 987
BsmAI	GTCTC	5 cut(s)	54, 202, 1002, 1004, 1105
BsmBI	CGTCTC	2 cut(s)	54, 1004
BsnI	GGCC	4 cut(s)	188, 449, 491, 877
Bsp1286I	GDGCHC	1 cut(s)	569
Bsp143I	GATC	3 cut(s)	46, 430, 616
Bsp19I	CCATGG	2 cut(s)	492, 912
BspACI	CCGC	2 cut(s)	927, 960
BspANI	GGCC	4 cut(s)	188, 449, 491, 877
BspCNI	CTCAG	3 cut(s)	763, 1012, 1099
BspHI	TCATGA	1 cut(s)	130
BspLI	GGNNCC	2 cut(s)	618, 693
BspMAI	CTGCAG	1 cut(s)	115
BspPI	GGATC	3 cut(s)	54, 611, 624
BspQI	GCTCTTC	1 cut(s)	908
BspTI	CTTAAG	1 cut(s)	212
BsrBI	CCGCTC	1 cut(s)	929
BsrDI	GCAATG	1 cut(s)	729
BsrI	ACTGG	2 cut(s)	354, 533
BssECI	CCNNGG	4 cut(s)	387, 486, 492, 912
BssMI	GATC	3 cut(s)	46, 430, 616
BssT1I	CCWWGG	4 cut(s)	387, 486, 492, 912
Bst2UI	CCWGG	3 cut(s)	336, 588, 1209
Bst6I	CTCTTC	1 cut(s)	908
BstAFI	CTTAAG	1 cut(s)	212
BstC8I	GCNNGC	3 cut(s)	11, 875, 1038
BstDEI	CTNAG	4 cut(s)	750, 999, 1107, 1171
BstDSI	CCRYGG	2 cut(s)	492, 912
BstF5I	GGATG	5 cut(s)	358, 467, 596, 600, 615
BstKTI	GATC	3 cut(s)	49, 433, 619
BstMAI	GTCTC	5 cut(s)	54, 202, 1002, 1004, 1105
BstMBI	GATC	3 cut(s)	46, 430, 616
BstMWI	GCNNNNNNNGC	4 cut(s)	80, 223, 722, 731
BstNI	CCWGG	3 cut(s)	336, 588, 1209
BstNSI	RCATGY	2 cut(s)	1129, 1226
BstSCI	CCNGG	3 cut(s)	334, 586, 1207
BstSFI	CTRYAG	1 cut(s)	111
BstV1I	GCAGC	3 cut(s)	58, 125, 712
BstX2I	RGATCY	3 cut(s)	46, 430, 616
BstXI	CCANNNNNNTGG	1 cut(s)	493
BstYI	RGATCY	3 cut(s)	46, 430, 616
BsuRI	GGCC	4 cut(s)	188, 449, 491, 877
BtgI	CCRYGG	2 cut(s)	492, 912
BtsCI	GGATG	5 cut(s)	358, 467, 596, 600, 615
BtsIMutI	CAGTG	2 cut(s)	347, 1104
Cac8I	GCNNGC	3 cut(s)	11, 875, 1038
CciI	TCATGA	1 cut(s)	130
Cfr13I	GGNCC	2 cut(s)	170, 447
Csp6I	GTAC	3 cut(s)	530, 680, 1045
CviAII	CATG	9 cut(s)	131, 271, 493, 703, 740, 859, 913, 1126, 1223
CviQI	GTAC	3 cut(s)	530, 680, 1045
DdeI	CTNAG	4 cut(s)	750, 999, 1107, 1171
DpnI	GATC	3 cut(s)	48, 432, 618
DpnII	GATC	3 cut(s)	46, 430, 616
DrdI	GACNNNNNNGTC	1 cut(s)	767
DriI	GACNNNNNGTC	1 cut(s)	554
DseDI	GACNNNNNNGTC	1 cut(s)	767
Eam1104I	CTCTTC	1 cut(s)	908
Eam1105I	GACNNNNNGTC	1 cut(s)	554
EarI	CTCTTC	1 cut(s)	908
Eco130I	CCWWGG	4 cut(s)	387, 486, 492, 912
Eco47I	GGWCC	1 cut(s)	170
Eco57I	CTGAAG	2 cut(s)	889, 1152
EcoO109I	RGGNCCY	1 cut(s)	170
EcoRI	GAATTC	1 cut(s)	313
EcoRII	CCWGG	3 cut(s)	334, 586, 1207
EcoT14I	CCWWGG	4 cut(s)	387, 486, 492, 912
ErhI	CCWWGG	4 cut(s)	387, 486, 492, 912
Esp3I	CGTCTC	2 cut(s)	54, 1004
FaeI	CATG	9 cut(s)	134, 274, 496, 706, 743, 862, 916, 1129, 1226
FatI	CATG	9 cut(s)	130, 270, 492, 702, 739, 858, 912, 1125, 1222
FauI	CCCGC	1 cut(s)	953
FauNDI	CATATG	2 cut(s)	241, 475
FblI	GTMKAC	2 cut(s)	666, 771
Fnu4HI	GCNGC	3 cut(s)	72, 114, 726
FokI	GGATG	5 cut(s)	365, 474, 603, 607, 622
Fsp4HI	GCNGC	3 cut(s)	72, 114, 726
FspBI	CTAG	6 cut(s)	14, 56, 552, 662, 822, 1053
GluI	GCNGC	3 cut(s)	72, 114, 726
HaeIII	GGCC	4 cut(s)	188, 449, 491, 877
HapII	CCGG	2 cut(s)	20, 695
Hin1II	CATG	9 cut(s)	134, 274, 496, 706, 743, 862, 916, 1129, 1226
HincII	GTYRAC	2 cut(s)	712, 966
HindII	GTYRAC	2 cut(s)	712, 966
HindIII	AAGCTT	1 cut(s)	1168
HinfI	GANTC	3 cut(s)	267, 339, 863
HpaI	GTTAAC	1 cut(s)	712
HpaII	CCGG	2 cut(s)	20, 695
HphI	GGTGA	3 cut(s)	475, 536, 843
Hpy166II	GTNNAC	6 cut(s)	483, 667, 712, 772, 796, 966
Hpy188I	TCNGA	4 cut(s)	548, 753, 1002, 1132
Hpy188III	TCNNGA	3 cut(s)	131, 562, 1228
Hpy8I	GTNNAC	6 cut(s)	483, 667, 712, 772, 796, 966
HpyAV	CCTTC	3 cut(s)	593, 1080, 1225
HpyCH4IV	ACGT	1 cut(s)	885
HpyCH4V	TGCA	8 cut(s)	113, 194, 204, 226, 573, 734, 858, 1020
HpyF10VI	GCNNNNNNNGC	4 cut(s)	80, 223, 722, 731
HpyF3I	CTNAG	4 cut(s)	750, 999, 1107, 1171
HpySE526I	ACGT	1 cut(s)	885
Hsp92II	CATG	9 cut(s)	134, 274, 496, 706, 743, 862, 916, 1129, 1226
KspAI	GTTAAC	1 cut(s)	712
Kzo9I	GATC	3 cut(s)	46, 430, 616
LguI	GCTCTTC	1 cut(s)	908
LmnI	GCTCC	2 cut(s)	392, 914
Lsp1109I	GCAGC	3 cut(s)	58, 125, 712
LweI	GCATC	1 cut(s)	934
MaeI	CTAG	6 cut(s)	14, 56, 552, 662, 822, 1053
MaeII	ACGT	1 cut(s)	885
MalI	GATC	3 cut(s)	48, 432, 618
MbiI	CCGCTC	1 cut(s)	929
MboI	GATC	3 cut(s)	46, 430, 616
MboII	GAAGA	6 cut(s)	413, 895, 929, 1145, 1148, 1156
MfeI	CAATTG	1 cut(s)	621
MflI	RGATCY	3 cut(s)	46, 430, 616
MhlI	GDGCHC	1 cut(s)	569
MluCI	AATT	4 cut(s)	41, 106, 313, 621
MlyI	GAGTC	1 cut(s)	857
MmeI	TCCRAC	3 cut(s)	7, 571, 1144
MnlI	CCTC	6 cut(s)	331, 403, 515, 859, 991, 1232
MroXI	GAANNNNTTC	1 cut(s)	902
MseI	TTAA	3 cut(s)	213, 711, 1215
MspCI	CTTAAG	1 cut(s)	212
MspI	CCGG	2 cut(s)	20, 695
MspR9I	CCNGG	3 cut(s)	336, 588, 1209
MunI	CAATTG	1 cut(s)	621
MvaI	CCWGG	3 cut(s)	336, 588, 1209
MwoI	GCNNNNNNNGC	4 cut(s)	80, 223, 722, 731
NcoI	CCATGG	2 cut(s)	492, 912
NdeI	CATATG	2 cut(s)	241, 475
NdeII	GATC	3 cut(s)	46, 430, 616
NlaIII	CATG	9 cut(s)	134, 274, 496, 706, 743, 862, 916, 1129, 1226
NlaIV	GGNNCC	2 cut(s)	618, 693
NspI	RCATGY	2 cut(s)	1129, 1226
PagI	TCATGA	1 cut(s)	130
PciSI	GCTCTTC	1 cut(s)	908
PdmI	GAANNNNTTC	1 cut(s)	902
PfeI	GAWTC	2 cut(s)	267, 339
PflMI	CCANNNNNTGG	3 cut(s)	184, 587, 817
PfoI	TCCNGGA	1 cut(s)	586
PkrI	GCNGC	3 cut(s)	73, 115, 727
PleI	GAGTC	1 cut(s)	857
PpsI	GAGTC	1 cut(s)	857
PpuMI	RGGWCCY	1 cut(s)	170
PsiI	TTATAA	1 cut(s)	104
Psp1406I	AACGTT	1 cut(s)	885
Psp5II	RGGWCCY	1 cut(s)	170
Psp6I	CCWGG	3 cut(s)	334, 586, 1207
PspGI	CCWGG	3 cut(s)	334, 586, 1207
PspN4I	GGNNCC	2 cut(s)	618, 693
PspPI	GGNCC	2 cut(s)	170, 447
PspPPI	RGGWCCY	1 cut(s)	170
PstI	CTGCAG	1 cut(s)	115
PsuI	RGATCY	3 cut(s)	46, 430, 616
RsaI	GTAC	3 cut(s)	531, 681, 1046
RsaNI	GTAC	3 cut(s)	530, 680, 1045
SapI	GCTCTTC	1 cut(s)	908
SaqAI	TTAA	3 cut(s)	213, 711, 1215
SatI	GCNGC	3 cut(s)	72, 114, 726
Sau3AI	GATC	3 cut(s)	46, 430, 616
Sau96I	GGNCC	2 cut(s)	170, 447
ScaI	AGTACT	1 cut(s)	1046
SchI	GAGTC	1 cut(s)	857
ScrFI	CCNGG	3 cut(s)	336, 588, 1209
SduI	GDGCHC	1 cut(s)	569
SfaNI	GCATC	1 cut(s)	934
SfcI	CTRYAG	1 cut(s)	111
SinI	GGWCC	1 cut(s)	170
SmlI	CTYRAG	2 cut(s)	212, 1007
SmoI	CTYRAG	2 cut(s)	212, 1007
Sse9I	AATT	4 cut(s)	41, 106, 313, 621
SsiI	CCGC	2 cut(s)	927, 960
SspMI	CTAG	6 cut(s)	14, 56, 552, 662, 822, 1053
StyD4I	CCNGG	3 cut(s)	334, 586, 1207
StyI	CCWWGG	4 cut(s)	387, 486, 492, 912
TaiI	ACGT	1 cut(s)	888
TaqI	TCGA	3 cut(s)	561, 866, 983
TasI	AATT	4 cut(s)	41, 106, 313, 621
TatI	WGTACW	1 cut(s)	1044
TfiI	GAWTC	2 cut(s)	267, 339
Tru1I	TTAA	3 cut(s)	213, 711, 1215
Tru9I	TTAA	3 cut(s)	213, 711, 1215
TscAI	CASTG	2 cut(s)	354, 1111
TseI	GCWGC	3 cut(s)	71, 113, 725
TspRI	CASTG	2 cut(s)	354, 1111
Van91I	CCANNNNNTGG	3 cut(s)	184, 587, 817
Vha464I	CTTAAG	1 cut(s)	212
VpaK11BI	GGWCC	1 cut(s)	170
XapI	RAATTY	2 cut(s)	106, 313
XceI	RCATGY	2 cut(s)	1129, 1226
XcmI	CCANNNNNNNNNTGG	1 cut(s)	588
XmiI	GTMKAC	2 cut(s)	666, 771
XmnI	GAANNNNTTC	1 cut(s)	902
XspI	CTAG	6 cut(s)	14, 56, 552, 662, 822, 1053
ZrmI	AGTACT	1 cut(s)	1046

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.