Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3C

Orthogroup ID

OG0014285

Physical Location & Seq

Genomic Coordinates Forward (+)

24063762 .. 24067823

Gene Structure 4062 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3CG248600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1338 bp

ATGGAAGCTTCATTGCTGAACTCTTTCTCTTCAATGATTAATGCACCAAATAAACTTGCGAGACTGTCAGAAAAGTGGGATTGGTGCTTGTTGAGGAGAAAAAAGAGTAGTTTGGCTGTGTGCCAAGGAGCATCATCAGGTGGAAATGCCAAAAAGATTAGTGGTTTTTCTTCTGCTGCAACTCTAATGGATGCAGGAAGCCTTGTTTTGTCTCTAAATGATCAGAAGGTCCAGAAGAAGAACAAATTTTCAGTCAAGGATTTGGTGCCTTTTGTGGAGATGCATGACGGTATTGGAATTGTAAAGTTTCTTAAAGGAAAAGGGTTCTTCATTACTGGCGGAACCGGGTTTCTAGCAAAAGTTCTTATTGAGAAGATTTTACGGACCGCACCTGATGTGGGGAAGATATATCTCTTGATCAAGGCCAAAAACAAGGAGGCTGCAATGGAAAGACTAAAAAGTGAAATCATAAGCACAGAGCTTTTCAAAGGTCTTAGACAAACTTACGGAAAATCTTATCAAGCCTTCATGTTGAGCAAGCTAGTTCCGGTGGTTGGAAATTTATGTGAATTGGATCTTGGGCTAGGAGACGATATAGCTGCTTTGATTGCTAAAGAAGTTGATGTTGTTATAAATTCTGCAGCTAACACGACATTTCATGAAAGATATGATGTAGCTTTAGATATAAACACAAAAGGACCTTGCCACCTTATGGCCTTTGCAAAGAAGTGCAAGAGACTTGAGCTCTTTCTGCAAATATCAACAGCATATGTCAATGGACAAAGACAAGGGAGAATCATGGAAAAGCCATTTCATATAGGAGAAAGCATAACAGGAGAGAATTCCACCTCTAATACCCCCCCAGGATTCTATCCACTGGATGTTGAAAATGAAATAAAGTTGGCTATGAACTCCAAGGGAGCTTATGAAGATAATGAGGTAGCTCAAAAGATGAAAGATCTGGGTTTGGAAAGGGCCAGAAAATATGGATGGCAAGATACATATGTGTTCACCAAGGCCATGGGAGAAATGCTGATTGATGATATGAGAGGTGATGTACCAGTAGTCATAATCCGACCTAGTGTCATCGAGAGCACTTGCAAAGAGCCATTTCCTGGATGGATCGAAGGAAATAGGATGATGGATCCAATTGTTTTATACTATGGAAAAGGACAGCTCACAGGTTTTCTAGGAGACCCTGATGTGGTACTTGATGTGGTATTTAATCTCTATCCACTGATATATACAAAAAAGTGCTCATCATCCAGAAAATCACACTCGGATCAAAATAAAATAAAATTCCAGAAAATCACATTTTTAATCTCTGAATACATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006163 GO:0006637 GO:0006725 GO:0006732 GO:0006753 GO:0006790 GO:0006793 GO:0006796 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009117 GO:0009150 GO:0009259 GO:0009555 GO:0009653 GO:0009698 GO:0009699 GO:0009987 GO:0010208 GO:0010345 GO:0010584 GO:0010927 GO:0016043 GO:0016491 GO:0016620 GO:0016627 GO:0016628 GO:0016903 GO:0019438 GO:0019637 GO:0019693 GO:0019748 GO:0022607 GO:0030198 GO:0032501 GO:0032502 GO:0032989 GO:0033865 GO:0033875 GO:0034032 GO:0034641 GO:0035336 GO:0035337 GO:0035383 GO:0043062 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0044085 GO:0044237 GO:0044238 GO:0044249 GO:0044281 GO:0044424 GO:0044464 GO:0044550 GO:0045229 GO:0046483 GO:0048229 GO:0048646 GO:0048856 GO:0048869 GO:0051186 GO:0055086 GO:0055114 GO:0071704 GO:0071840 GO:0072521 GO:0080019 GO:0085029 GO:1901135 GO:1901360 GO:1901362 GO:1901564 GO:1901568 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00073 ko04146 ko04212 map00073 map04146 map04212

Pfam Domains

Protein Families

NAD_binding_4 Sterile

Protein Analysis

445

Amino Acids

49.47

Weight (kDa)

9.08

Isoelectric Point (pI)

29.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Epimerase	PF01370	110 - 264	4.9e-09	NAD dependent epimerase/dehydratase family
NAD_binding_4	PF07993	111 - 407	4.9e-72	Male sterility protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0014285)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G11980
fragaria_vesca	FvH4_6g21540 FvH4_6g21540
malus_domestica	MD14G1051100.v1.1
prunus_persica	Prupe.7G084900_v2.0.a1
pyrus_communis	pycom12g04600
rosa_chinensis	RchiOBHm_Chr3g0478781
rosa_laevigata	RLG00000023627
rosa_rugosa	Rorug03G0167900 Rorug03G0168000 Rorug03G0168000 Rorug03G0168100.1
rosa_samantha	Rh3AG219900 Rh3BG251700 Rh3CG248600 Rh3DG244800
rosa_wichuraiana	Rw3G019750

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	632
AccB1I	GGYRCC	1 cut(s)	265
AccB7I	CCANNNNNTGG	2 cut(s)	712, 1115
AciI	CCGC	1 cut(s)	339
AclWI	GGATC	5 cut(s)	582, 1130, 1139, 1152, 1290
AcsI	RAATTY	5 cut(s)	245, 559, 634, 841, 1298
AfaI	GTAC	2 cut(s)	1059, 1209
AfiI	CCNNNNNNNGG	5 cut(s)	398, 554, 712, 1115, 1204
AgsI	TTSAA	3 cut(s)	33, 487, 887
AhdI	GACNNNNNGTC	1 cut(s)	1082
AjnI	CCWGG	2 cut(s)	862, 1114
AjuI	GAANNNNNNNTTGG	2 cut(s)	561, 593
Alw21I	GWGCWC	3 cut(s)	747, 1097, 1259
Alw26I	GTCTC	5 cut(s)	55, 216, 582, 730, 1188
AlwI	GGATC	5 cut(s)	582, 1130, 1139, 1152, 1290
AoxI	GGCC	4 cut(s)	423, 714, 975, 1017
ApeKI	GCWGC	4 cut(s)	176, 440, 599, 641
ApoI	RAATTY	5 cut(s)	245, 559, 634, 841, 1298
ArsI	GACNNNNNNTTYG	2 cut(s)	237, 269
AseI	ATTAAT	1 cut(s)	39
Asp700I	GAANNNNTTC	1 cut(s)	23
AspS9I	GGNCC	4 cut(s)	229, 384, 698, 975
AsuC2I	CCSGG	1 cut(s)	346
AsuHPI	GGTGA	2 cut(s)	1003, 1064
AvaII	GGWCC	3 cut(s)	229, 384, 698
BaeI	ACNNNNGTAYC	2 cut(s)	990, 1023
BamHI	GGATCC	1 cut(s)	1144
BanI	GGYRCC	1 cut(s)	265
BanII	GRGCYC	1 cut(s)	747
Bbv12I	GWGCWC	3 cut(s)	747, 1097, 1259
BbvI	GCAGC	4 cut(s)	163, 427, 586, 653
BccI	CCATC	3 cut(s)	984, 1113, 1135
BcgI	CGANNNNNNTGC	2 cut(s)	581, 615
BciT130I	CCWGG	2 cut(s)	864, 1116
BclI	TGATCA	2 cut(s)	220, 417
BcnI	CCSGG	1 cut(s)	346
BcoDI	GTCTC	5 cut(s)	55, 216, 582, 730, 1188
BfaI	CTAG	5 cut(s)	353, 542, 584, 1080, 1190
BfmI	CTRYAG	1 cut(s)	639
BglII	AGATCT	1 cut(s)	958
BisI	GCNGC	4 cut(s)	177, 441, 600, 642
BlsI	GCNGC	4 cut(s)	178, 442, 601, 643
Bme1390I	CCNGG	3 cut(s)	346, 864, 1116
Bme18I	GGWCC	3 cut(s)	229, 384, 698
BmeRI	GACNNNNNGTC	1 cut(s)	1082
BmgT120I	GGNCC	4 cut(s)	229, 384, 698, 975
BmiI	GGNNCC	3 cut(s)	267, 343, 1146
BmrFI	CCNGG	3 cut(s)	346, 864, 1116
BmsI	GCATC	3 cut(s)	140, 181, 270
BpuEI	CTTGAG	1 cut(s)	761
BpuMI	CCSGG	1 cut(s)	346
BsaI	GGTCTC	1 cut(s)	1188
BsaJI	CCNNGG	5 cut(s)	124, 862, 915, 1014, 1020
BsaWI	WCCGGW	1 cut(s)	547
Bsc4I	CCNNNNNNNGG	5 cut(s)	398, 554, 712, 1115, 1204
Bse1I	ACTGG	1 cut(s)	340
Bse3DI	GCAATG	2 cut(s)	11, 450
BseBI	CCWGG	2 cut(s)	864, 1116
BseDI	CCNNGG	5 cut(s)	124, 862, 915, 1014, 1020
BseGI	GGATG	6 cut(s)	196, 886, 995, 1124, 1143, 1262
BseLI	CCNNNNNNNGG	5 cut(s)	398, 554, 712, 1115, 1204
BseMI	GCAATG	2 cut(s)	11, 450
BseNI	ACTGG	3 cut(s)	340, 882, 1061
BseRI	GAGGAG	1 cut(s)	109
BseXI	GCAGC	4 cut(s)	163, 427, 586, 653
BshFI	GGCC	4 cut(s)	425, 716, 977, 1019
BshNI	GGYRCC	1 cut(s)	265
BsiHKAI	GWGCWC	3 cut(s)	747, 1097, 1259
BsiSI	CCGG	2 cut(s)	345, 548
BslI	CCNNNNNNNGG	5 cut(s)	398, 554, 712, 1115, 1204
BsmAI	GTCTC	5 cut(s)	55, 216, 582, 730, 1188
BsmBI	CGTCTC	1 cut(s)	582
BsnI	GGCC	4 cut(s)	425, 716, 977, 1019
Bso31I	GGTCTC	1 cut(s)	1188
Bsp1286I	GDGCHC	3 cut(s)	747, 1097, 1259
Bsp143I	GATC	7 cut(s)	220, 417, 574, 958, 1122, 1144, 1282
Bsp19I	CCATGG	1 cut(s)	1020
BspACI	CCGC	2 cut(s)	339, 387
BspANI	GGCC	4 cut(s)	425, 716, 977, 1019
BspHI	TCATGA	1 cut(s)	658
BspLI	GGNNCC	3 cut(s)	267, 343, 1146
BspMAI	CTGCAG	1 cut(s)	643
BspPI	GGATC	5 cut(s)	582, 1130, 1139, 1152, 1290
BspT107I	GGYRCC	1 cut(s)	265
BspTNI	GGTCTC	1 cut(s)	1188
BsrDI	GCAATG	2 cut(s)	11, 450
BsrI	ACTGG	3 cut(s)	340, 882, 1061
BssECI	CCNNGG	5 cut(s)	124, 862, 915, 1014, 1020
BssMI	GATC	7 cut(s)	220, 417, 574, 958, 1122, 1144, 1282
BssT1I	CCWWGG	4 cut(s)	124, 915, 1014, 1020
Bst2UI	CCWGG	2 cut(s)	864, 1116
Bst4CI	ACNGT	2 cut(s)	66, 290
Bst6I	CTCTTC	1 cut(s)	34
BstC8I	GCNNGC	1 cut(s)	539
BstDEI	CTNAG	1 cut(s)	494
BstDSI	CCRYGG	1 cut(s)	1020
BstF5I	GGATG	6 cut(s)	196, 886, 995, 1124, 1143, 1262
BstKTI	GATC	7 cut(s)	223, 420, 577, 961, 1125, 1147, 1285
BstMAI	GTCTC	5 cut(s)	55, 216, 582, 730, 1188
BstMBI	GATC	7 cut(s)	220, 417, 574, 958, 1122, 1144, 1282
BstMWI	GCNNNNNNNGC	2 cut(s)	608, 751
BstNI	CCWGG	2 cut(s)	864, 1116
BstSCI	CCNGG	3 cut(s)	344, 862, 1114
BstSFI	CTRYAG	1 cut(s)	639
BstV1I	GCAGC	4 cut(s)	163, 427, 586, 653
BstX2I	RGATCY	3 cut(s)	574, 958, 1144
BstXI	CCANNNNNNTGG	1 cut(s)	1021
BstYI	RGATCY	3 cut(s)	574, 958, 1144
BsuRI	GGCC	4 cut(s)	425, 716, 977, 1019
BtgI	CCRYGG	1 cut(s)	1020
BtsCI	GGATG	6 cut(s)	196, 886, 995, 1124, 1143, 1262
BtsIMutI	CAGTG	2 cut(s)	875, 1235
Cac8I	GCNNGC	1 cut(s)	539
CciI	TCATGA	1 cut(s)	658
Cfr13I	GGNCC	4 cut(s)	229, 384, 698, 975
CpoI	CGGWCCG	1 cut(s)	384
Csp6I	GTAC	2 cut(s)	1058, 1208
CspI	CGGWCCG	1 cut(s)	384
CviAII	CATG	5 cut(s)	284, 529, 659, 799, 1021
CviQI	GTAC	2 cut(s)	1058, 1208
DdeI	CTNAG	1 cut(s)	494
DpnI	GATC	7 cut(s)	222, 419, 576, 960, 1124, 1146, 1284
DpnII	GATC	7 cut(s)	220, 417, 574, 958, 1122, 1144, 1282
DriI	GACNNNNNGTC	1 cut(s)	1082
Eam1104I	CTCTTC	1 cut(s)	34
Eam1105I	GACNNNNNGTC	1 cut(s)	1082
EarI	CTCTTC	1 cut(s)	34
EciI	GGCGGA	1 cut(s)	354
Ecl136II	GAGCTC	1 cut(s)	745
Eco130I	CCWWGG	4 cut(s)	124, 915, 1014, 1020
Eco24I	GRGCYC	1 cut(s)	747
Eco31I	GGTCTC	1 cut(s)	1188
Eco47I	GGWCC	3 cut(s)	229, 384, 698
Eco53kI	GAGCTC	1 cut(s)	745
EcoICRI	GAGCTC	1 cut(s)	745
EcoO109I	RGGNCCY	1 cut(s)	698
EcoRI	GAATTC	1 cut(s)	841
EcoRII	CCWGG	2 cut(s)	862, 1114
EcoT14I	CCWWGG	4 cut(s)	124, 915, 1014, 1020
EcoT22I	ATGCAT	1 cut(s)	285
EcoT38I	GRGCYC	1 cut(s)	747
ErhI	CCWWGG	4 cut(s)	124, 915, 1014, 1020
Esp3I	CGTCTC	1 cut(s)	582
FaeI	CATG	5 cut(s)	287, 532, 662, 802, 1024
FatI	CATG	5 cut(s)	283, 528, 658, 798, 1020
FauNDI	CATATG	2 cut(s)	769, 1003
FbaI	TGATCA	2 cut(s)	220, 417
Fnu4HI	GCNGC	4 cut(s)	177, 441, 600, 642
FokI	GGATG	6 cut(s)	203, 893, 1002, 1131, 1150, 1249
FriOI	GRGCYC	1 cut(s)	747
Fsp4HI	GCNGC	4 cut(s)	177, 441, 600, 642
FspBI	CTAG	5 cut(s)	353, 542, 584, 1080, 1190
GluI	GCNGC	4 cut(s)	177, 441, 600, 642
HaeIII	GGCC	4 cut(s)	425, 716, 977, 1019
HapII	CCGG	2 cut(s)	345, 548
Hin1II	CATG	5 cut(s)	287, 532, 662, 802, 1024
HindIII	AAGCTT	1 cut(s)	6
HinfI	GANTC	2 cut(s)	795, 867
HpaII	CCGG	2 cut(s)	345, 548
HphI	GGTGA	2 cut(s)	1003, 1064
Hpy166II	GTNNAC	1 cut(s)	1011
Hpy188I	TCNGA	6 cut(s)	70, 225, 1076, 1282, 1327, 1337
Hpy188III	TCNNGA	6 cut(s)	232, 415, 659, 1090, 1266, 1303
Hpy8I	GTNNAC	1 cut(s)	1011
HpyAV	CCTTC	3 cut(s)	220, 535, 1121
HpyCH4III	ACNGT	2 cut(s)	66, 290
HpyF10VI	GCNNNNNNNGC	2 cut(s)	608, 751
HpyF3I	CTNAG	1 cut(s)	494
Hsp92II	CATG	5 cut(s)	287, 532, 662, 802, 1024
Ksp22I	TGATCA	2 cut(s)	220, 417
Kzo9I	GATC	7 cut(s)	220, 417, 574, 958, 1122, 1144, 1282
LmnI	GCTCC	2 cut(s)	128, 920
Lsp1109I	GCAGC	4 cut(s)	163, 427, 586, 653
LweI	GCATC	3 cut(s)	140, 181, 270
MaeI	CTAG	5 cut(s)	353, 542, 584, 1080, 1190
MalI	GATC	7 cut(s)	222, 419, 576, 960, 1124, 1146, 1284
MboI	GATC	7 cut(s)	220, 417, 574, 958, 1122, 1144, 1282
MboII	GAAGA	8 cut(s)	21, 162, 247, 250, 319, 385, 415, 941
MfeI	CAATTG	1 cut(s)	1149
MflI	RGATCY	3 cut(s)	574, 958, 1144
MhlI	GDGCHC	3 cut(s)	747, 1097, 1259
MluCI	AATT	8 cut(s)	245, 297, 559, 569, 634, 841, 1149, 1298
MmeI	TCCRAC	2 cut(s)	535, 1099
MnlI	CCTC	5 cut(s)	87, 430, 859, 931, 1043
Mph1103I	ATGCAT	1 cut(s)	285
MroXI	GAANNNNTTC	1 cut(s)	23
MseI	TTAA	4 cut(s)	39, 312, 1224, 1319
MspI	CCGG	2 cut(s)	345, 548
MspR9I	CCNGG	3 cut(s)	346, 864, 1116
MunI	CAATTG	1 cut(s)	1149
MvaI	CCWGG	2 cut(s)	864, 1116
MwoI	GCNNNNNNNGC	2 cut(s)	608, 751
NciI	CCSGG	1 cut(s)	346
NcoI	CCATGG	1 cut(s)	1020
NdeI	CATATG	2 cut(s)	769, 1003
NdeII	GATC	7 cut(s)	220, 417, 574, 958, 1122, 1144, 1282
NlaIII	CATG	5 cut(s)	287, 532, 662, 802, 1024
NlaIV	GGNNCC	3 cut(s)	267, 343, 1146
NsiI	ATGCAT	1 cut(s)	285
PagI	TCATGA	1 cut(s)	658
PdmI	GAANNNNTTC	1 cut(s)	23
PfeI	GAWTC	2 cut(s)	795, 867
PflMI	CCANNNNNTGG	2 cut(s)	712, 1115
PfoI	TCCNGGA	1 cut(s)	1114
PkrI	GCNGC	4 cut(s)	178, 442, 601, 643
PpuMI	RGGWCCY	1 cut(s)	698
PshBI	ATTAAT	1 cut(s)	39
PsiI	TTATAA	1 cut(s)	632
Psp124BI	GAGCTC	1 cut(s)	747
Psp5II	RGGWCCY	1 cut(s)	698
Psp6I	CCWGG	2 cut(s)	862, 1114
PspGI	CCWGG	2 cut(s)	862, 1114
PspN4I	GGNNCC	3 cut(s)	267, 343, 1146
PspPI	GGNCC	4 cut(s)	229, 384, 698, 975
PspPPI	RGGWCCY	1 cut(s)	698
PstI	CTGCAG	1 cut(s)	643
PsuI	RGATCY	3 cut(s)	574, 958, 1144
RsaI	GTAC	2 cut(s)	1059, 1209
RsaNI	GTAC	2 cut(s)	1058, 1208
Rsr2I	CGGWCCG	1 cut(s)	384
RsrII	CGGWCCG	1 cut(s)	384
SacI	GAGCTC	1 cut(s)	747
SaqAI	TTAA	4 cut(s)	39, 312, 1224, 1319
SatI	GCNGC	4 cut(s)	177, 441, 600, 642
Sau3AI	GATC	7 cut(s)	220, 417, 574, 958, 1122, 1144, 1282
Sau96I	GGNCC	4 cut(s)	229, 384, 698, 975
ScrFI	CCNGG	3 cut(s)	346, 864, 1116
SduI	GDGCHC	3 cut(s)	747, 1097, 1259
SfaNI	GCATC	3 cut(s)	140, 181, 270
SfcI	CTRYAG	1 cut(s)	639
SinI	GGWCC	3 cut(s)	229, 384, 698
SmlI	CTYRAG	1 cut(s)	740
SmoI	CTYRAG	1 cut(s)	740
Sse9I	AATT	8 cut(s)	245, 297, 559, 569, 634, 841, 1149, 1298
SsiI	CCGC	2 cut(s)	339, 387
SspMI	CTAG	5 cut(s)	353, 542, 584, 1080, 1190
SstI	GAGCTC	1 cut(s)	747
StyD4I	CCNGG	3 cut(s)	344, 862, 1114
StyI	CCWWGG	4 cut(s)	124, 915, 1014, 1020
TaaI	ACNGT	2 cut(s)	66, 290
TaqI	TCGA	2 cut(s)	1089, 1125
TasI	AATT	8 cut(s)	245, 297, 559, 569, 634, 841, 1149, 1298
TfiI	GAWTC	2 cut(s)	795, 867
Tru1I	TTAA	4 cut(s)	39, 312, 1224, 1319
Tru9I	TTAA	4 cut(s)	39, 312, 1224, 1319
TscAI	CASTG	2 cut(s)	882, 1242
TseI	GCWGC	4 cut(s)	176, 440, 599, 641
TspDTI	ATGAA	9 cut(s)	319, 517, 647, 675, 803, 906, 923, 942, 968
TspGWI	ACGGA	2 cut(s)	397, 522
TspRI	CASTG	2 cut(s)	882, 1242
Van91I	CCANNNNNTGG	2 cut(s)	712, 1115
VpaK11BI	GGWCC	3 cut(s)	229, 384, 698
VspI	ATTAAT	1 cut(s)	39
XapI	RAATTY	5 cut(s)	245, 559, 634, 841, 1298
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1116
XmnI	GAANNNNTTC	1 cut(s)	23
XspI	CTAG	5 cut(s)	353, 542, 584, 1080, 1190
Zsp2I	ATGCAT	1 cut(s)	285

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.