Rh3BG364900

metal ion binding

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3B
Physical Location & Seq
Forward (+)
44974907 .. 44976110
1204 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3BG364900.1

Sequence Viewer

Length: 387 bp
ATGGGGGCCGTCTCCTTACTCATTTTGCATATAAATATATGTTCCGTTCCGCATTTCCATCCATCCATCCATCCATCAGAAGAAATTCATCACAACCAGAAAGAAAGAGAGAGAGAGATAATGGCAGGAATCATCCACAAGATCGGAGATGCGCTCCACATCGGAGGAGAAGGCAAAGACAAGGAACAACACAAGGAGGGCGAGCACCACAAGAAGGAGGGCGAGCACTGCAAGGATGACCACAAAAAACACAAGGACGACCACGGCGACGATCACCACAAAAGCAAGGGCCACGACGAGCACCACAAGGACGACAAAAAGAAGAAGAAGAAGAACAAGGACAAGAAGAAGGAGGACGGACACAGCAGCAGCAGCGACAGCGATTAG

Protein Analysis

128

Amino Acids

14.69

Weight (kDa)

6.87

Isoelectric Point (pI)

52.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0019175)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G54410
fragaria_vesca FvH4_3g17320
malus_domestica MD14G1005700.v1.1
prunus_persica Prupe.7G009800_v2.0.a1
rosa_chinensis RchiOBHm_Chr3g0496451
rosa_rugosa Rorug03G0283000
rosa_samantha Rh3BG364900
rosa_wichuraiana Rw3G028790

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 50
AcsI RAATTY 1 cut(s) 84
AfiI CCNNNNNNNGG 1 cut(s) 214
Alw21I GWGCWC 3 cut(s) 207, 228, 303
Alw26I GTCTC 1 cut(s) 16
AoxI GGCC 2 cut(s) 6, 289
ApeKI GCWGC 3 cut(s) 366, 369, 372
ApoI RAATTY 1 cut(s) 84
Asp700I GAANNNNTTC 1 cut(s) 84
AspLEI GCGC 1 cut(s) 154
AspS9I GGNCC 2 cut(s) 6, 289
AsuHPI GGTGA 1 cut(s) 266
Bbv12I GWGCWC 3 cut(s) 207, 228, 303
BbvI GCAGC 2 cut(s) 378, 381
BccI CCATC 5 cut(s) 66, 70, 74, 78, 82
BceAI ACGGC 1 cut(s) 280
BcoDI GTCTC 1 cut(s) 16
BisI GCNGC 3 cut(s) 367, 370, 373
BlsI GCNGC 3 cut(s) 368, 371, 374
BmgT120I GGNCC 2 cut(s) 6, 289
BmiI GGNNCC 1 cut(s) 7
BmsI GCATC 1 cut(s) 139
BplI GAGNNNNNCTC 2 cut(s) 138, 170
BsaJI CCNNGG 1 cut(s) 262
Bsc4I CCNNNNNNNGG 1 cut(s) 214
BseDI CCNNGG 1 cut(s) 262
BseGI GGATG 6 cut(s) 58, 62, 66, 70, 132, 241
BseLI CCNNNNNNNGG 1 cut(s) 214
BseRI GAGGAG 1 cut(s) 180
BseXI GCAGC 2 cut(s) 378, 381
BshFI GGCC 2 cut(s) 8, 291
BsiHKAI GWGCWC 3 cut(s) 207, 228, 303
BslI CCNNNNNNNGG 1 cut(s) 214
BsmAI GTCTC 1 cut(s) 16
BsmBI CGTCTC 1 cut(s) 16
BsnI GGCC 2 cut(s) 8, 291
Bsp1286I GDGCHC 3 cut(s) 207, 228, 303
Bsp143I GATC 2 cut(s) 141, 271
BspACI CCGC 1 cut(s) 50
BspANI GGCC 2 cut(s) 8, 291
BspLI GGNNCC 1 cut(s) 7
BssECI CCNNGG 1 cut(s) 262
BssMI GATC 2 cut(s) 141, 271
BstC8I GCNNGC 2 cut(s) 203, 224
BstDSI CCRYGG 1 cut(s) 262
BstF5I GGATG 6 cut(s) 58, 62, 66, 70, 132, 241
BstHHI GCGC 1 cut(s) 154
BstKTI GATC 2 cut(s) 144, 274
BstMAI GTCTC 1 cut(s) 16
BstMBI GATC 2 cut(s) 141, 271
BstMWI GCNNNNNNNGC 3 cut(s) 228, 372, 378
BstV1I GCAGC 2 cut(s) 378, 381
BsuRI GGCC 2 cut(s) 8, 291
BtgI CCRYGG 1 cut(s) 262
BtsCI GGATG 6 cut(s) 58, 62, 66, 70, 132, 241
BtsI GCAGTG 1 cut(s) 226
BtsIMutI CAGTG 1 cut(s) 226
Cac8I GCNNGC 2 cut(s) 203, 224
CfoI GCGC 1 cut(s) 154
Cfr13I GGNCC 2 cut(s) 6, 289
CviJI RGCY 2 cut(s) 8, 291
CviKI_1 RGCY 2 cut(s) 8, 291
DpnI GATC 2 cut(s) 143, 273
DpnII GATC 2 cut(s) 141, 271
Esp3I CGTCTC 1 cut(s) 16
FaiI YATR 4 cut(s) 30, 32, 38, 40
Fnu4HI GCNGC 3 cut(s) 367, 370, 373
FokI GGATG 6 cut(s) 45, 49, 53, 57, 119, 248
Fsp4HI GCNGC 3 cut(s) 367, 370, 373
GlaI GCGC 1 cut(s) 153
GluI GCNGC 3 cut(s) 367, 370, 373
HaeIII GGCC 2 cut(s) 8, 291
HhaI GCGC 1 cut(s) 154
Hin6I GCGC 1 cut(s) 152
HinP1I GCGC 1 cut(s) 152
HinfI GANTC 1 cut(s) 129
HphI GGTGA 1 cut(s) 266
Hpy188I TCNGA 3 cut(s) 79, 146, 164
Hpy99I CGWCG 2 cut(s) 272, 299
HpyAV CCTTC 3 cut(s) 164, 208, 343
HpyCH4V TGCA 2 cut(s) 28, 231
HpyF10VI GCNNNNNNNGC 3 cut(s) 228, 372, 378
HspAI GCGC 1 cut(s) 152
Kzo9I GATC 2 cut(s) 141, 271
LmnI GCTCC 1 cut(s) 159
LpnPI CCDG 2 cut(s) 110, 111
Lsp1109I GCAGC 2 cut(s) 378, 381
LweI GCATC 1 cut(s) 139
MalI GATC 2 cut(s) 143, 273
MboI GATC 2 cut(s) 141, 271
MboII GAAGA 6 cut(s) 92, 334, 337, 340, 343, 358
MhlI GDGCHC 3 cut(s) 207, 228, 303
MluCI AATT 1 cut(s) 84
MnlI CCTC 4 cut(s) 158, 190, 211, 346
MroXI GAANNNNTTC 1 cut(s) 84
MwoI GCNNNNNNNGC 3 cut(s) 228, 372, 378
NdeII GATC 2 cut(s) 141, 271
NlaIV GGNNCC 1 cut(s) 7
PcsI WCGNNNNNNNCGW 1 cut(s) 264
PdmI GAANNNNTTC 1 cut(s) 84
PfeI GAWTC 1 cut(s) 129
PkrI GCNGC 3 cut(s) 368, 371, 374
PspN4I GGNNCC 1 cut(s) 7
PspPI GGNCC 2 cut(s) 6, 289
SatI GCNGC 3 cut(s) 367, 370, 373
Sau3AI GATC 2 cut(s) 141, 271
Sau96I GGNCC 2 cut(s) 6, 289
SduI GDGCHC 3 cut(s) 207, 228, 303
SfaNI GCATC 1 cut(s) 139
Sse9I AATT 1 cut(s) 84
SsiI CCGC 1 cut(s) 50
TasI AATT 1 cut(s) 84
TfiI GAWTC 1 cut(s) 129
TscAI CASTG 1 cut(s) 233
TseI GCWGC 3 cut(s) 366, 369, 372
TspDTI ATGAA 1 cut(s) 77
TspGWI ACGGA 2 cut(s) 34, 372
TspRI CASTG 1 cut(s) 233
XapI RAATTY 1 cut(s) 84
XmnI GAANNNNTTC 1 cut(s) 84
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.