Rh3CG365000

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3C
OG0024966
Physical Location & Seq
Reverse (-)
45891509 .. 45891787
279 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3CG365000.1

Sequence Viewer

Length: 279 bp
ATGAGCCCCGAGAACGTGTACCTTATGGGTGAATCCTCTAATTCATCGAATTGTCCTCACCCTTTAGACGGCGGCGCTAATCCTTTCCCTATTCCAGGTATTCCAATTACGGCGGTGGAACTAGCGGTAAGTATTATGGTAATTCCTTACATGTGCATCCTTATGGGTGTCCTCGCCACAATCTTCCCAGTCAAAGTCGCCACCTCCACCATCTTCGTCGCCGAGAGCTTTGACTTGGGACTTCATAAACTCGTTCGAAAGCATAGAGAGCTCTCGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

92

Amino Acids

9.88

Weight (kDa)

5.8

Isoelectric Point (pI)

44.78

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Orthologous Genes (Group: OG0024966)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr4g0398621
rosa_samantha Rh3CG365000 Rh3DG368100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 72, 113, 125
AfaI GTAC 1 cut(s) 20
AfiI CCNNNNNNNGG 2 cut(s) 68, 95
AflIII ACRYGT 2 cut(s) 15, 150
AjnI CCWGG 1 cut(s) 94
AluBI AGCT 2 cut(s) 228, 271
AluI AGCT 2 cut(s) 228, 271
Alw21I GWGCWC 1 cut(s) 273
Ama87I CYCGRG 1 cut(s) 8
AspLEI GCGC 1 cut(s) 77
AsuHPI GGTGA 2 cut(s) 41, 50
AsuII TTCGAA 1 cut(s) 256
AvaI CYCGRG 1 cut(s) 8
BanII GRGCYC 2 cut(s) 8, 273
BauI CACGAG 1 cut(s) 274
Bbv12I GWGCWC 1 cut(s) 273
BccI CCATC 1 cut(s) 218
BceAI ACGGC 2 cut(s) 85, 126
BciT130I CCWGG 1 cut(s) 96
BfaI CTAG 1 cut(s) 122
BfoI RGCGCY 1 cut(s) 78
BisI GCNGC 1 cut(s) 73
BlsI GCNGC 1 cut(s) 74
Bme1390I CCNGG 1 cut(s) 96
BmeT110I CYCGRG 1 cut(s) 8
BmrFI CCNGG 1 cut(s) 96
BmrI ACTGGG 1 cut(s) 182
BmsI GCATC 1 cut(s) 165
BmuI ACTGGG 1 cut(s) 182
Bpu14I TTCGAA 1 cut(s) 256
Bsc4I CCNNNNNNNGG 2 cut(s) 68, 95
Bse1I ACTGG 1 cut(s) 188
BseBI CCWGG 1 cut(s) 96
BseGI GGATG 1 cut(s) 156
BseLI CCNNNNNNNGG 2 cut(s) 68, 95
BseNI ACTGG 1 cut(s) 188
BsiHKAI GWGCWC 1 cut(s) 273
BsiHKCI CYCGRG 1 cut(s) 8
BslFI GGGAC 1 cut(s) 252
BslI CCNNNNNNNGG 2 cut(s) 68, 95
BsmFI GGGAC 1 cut(s) 252
BsoBI CYCGRG 1 cut(s) 8
Bsp119I TTCGAA 1 cut(s) 256
Bsp1286I GDGCHC 2 cut(s) 8, 273
BspACI CCGC 3 cut(s) 72, 113, 125
BspT104I TTCGAA 1 cut(s) 256
BsrI ACTGG 1 cut(s) 188
BssSI CACGAG 1 cut(s) 274
Bst2BI CACGAG 1 cut(s) 274
Bst2UI CCWGG 1 cut(s) 96
BstBI TTCGAA 1 cut(s) 256
BstENI CCTNNNNNAGG 1 cut(s) 93
BstF5I GGATG 1 cut(s) 156
BstH2I RGCGCY 1 cut(s) 78
BstHHI GCGC 1 cut(s) 77
BstMWI GCNNNNNNNGC 1 cut(s) 268
BstNI CCWGG 1 cut(s) 96
BstNSI RCATGY 1 cut(s) 154
BstSCI CCNGG 1 cut(s) 94
BtsCI GGATG 1 cut(s) 156
CfoI GCGC 1 cut(s) 77
Csp6I GTAC 1 cut(s) 19
CviAII CATG 1 cut(s) 151
CviJI RGCY 3 cut(s) 6, 228, 271
CviKI_1 RGCY 3 cut(s) 6, 228, 271
CviQI GTAC 1 cut(s) 19
Ecl136II GAGCTC 1 cut(s) 271
Eco24I GRGCYC 2 cut(s) 8, 273
Eco53kI GAGCTC 1 cut(s) 271
Eco88I CYCGRG 1 cut(s) 8
EcoICRI GAGCTC 1 cut(s) 271
EcoNI CCTNNNNNAGG 1 cut(s) 93
EcoRII CCWGG 1 cut(s) 94
EcoT38I GRGCYC 2 cut(s) 8, 273
FaeI CATG 1 cut(s) 154
FaiI YATR 6 cut(s) 26, 137, 152, 164, 246, 264
FaqI GGGAC 1 cut(s) 252
FatI CATG 1 cut(s) 150
Fnu4HI GCNGC 1 cut(s) 73
FokI GGATG 1 cut(s) 143
FriOI GRGCYC 2 cut(s) 8, 273
Fsp4HI GCNGC 1 cut(s) 73
FspBI CTAG 1 cut(s) 122
GlaI GCGC 1 cut(s) 76
GluI GCNGC 1 cut(s) 73
HaeII RGCGCY 1 cut(s) 78
HhaI GCGC 1 cut(s) 77
Hin1II CATG 1 cut(s) 154
Hin6I GCGC 1 cut(s) 75
HinP1I GCGC 1 cut(s) 75
HinfI GANTC 1 cut(s) 32
HphI GGTGA 2 cut(s) 41, 50
Hpy166II GTNNAC 1 cut(s) 19
Hpy188III TCNNGA 1 cut(s) 276
Hpy8I GTNNAC 1 cut(s) 19
Hpy99I CGWCG 1 cut(s) 221
HpyCH4IV ACGT 1 cut(s) 15
HpyCH4V TGCA 1 cut(s) 156
HpyF10VI GCNNNNNNNGC 1 cut(s) 268
HpySE526I ACGT 1 cut(s) 15
Hsp92II CATG 1 cut(s) 154
HspAI GCGC 1 cut(s) 75
LpnPI CCDG 3 cut(s) 81, 108, 201
LweI GCATC 1 cut(s) 165
MaeI CTAG 1 cut(s) 122
MaeII ACGT 1 cut(s) 15
MboII GAAGA 2 cut(s) 175, 205
MhlI GDGCHC 2 cut(s) 8, 273
MluCI AATT 4 cut(s) 40, 49, 105, 141
MnlI CCTC 4 cut(s) 46, 66, 182, 214
MslI CAYNNNNRTG 1 cut(s) 161
MspR9I CCNGG 1 cut(s) 96
MvaI CCWGG 1 cut(s) 96
MwoI GCNNNNNNNGC 1 cut(s) 268
NlaIII CATG 1 cut(s) 154
NmeAIII GCCGAG 1 cut(s) 247
NspI RCATGY 1 cut(s) 154
NspV TTCGAA 1 cut(s) 256
PciI ACATGT 1 cut(s) 150
PfeI GAWTC 1 cut(s) 32
PkrI GCNGC 1 cut(s) 74
PscI ACATGT 1 cut(s) 150
Psp124BI GAGCTC 1 cut(s) 273
Psp6I CCWGG 1 cut(s) 94
PspGI CCWGG 1 cut(s) 94
RsaI GTAC 1 cut(s) 20
RsaNI GTAC 1 cut(s) 19
RseI CAYNNNNRTG 1 cut(s) 161
SacI GAGCTC 1 cut(s) 273
SatI GCNGC 1 cut(s) 73
ScrFI CCNGG 1 cut(s) 96
SduI GDGCHC 2 cut(s) 8, 273
SetI ASST 6 cut(s) 18, 24, 100, 206, 230, 273
SfaNI GCATC 1 cut(s) 165
SfuI TTCGAA 1 cut(s) 256
SmiMI CAYNNNNRTG 1 cut(s) 161
Sse9I AATT 4 cut(s) 40, 49, 105, 141
SsiI CCGC 3 cut(s) 72, 113, 125
SspMI CTAG 1 cut(s) 122
SstI GAGCTC 1 cut(s) 273
StyD4I CCNGG 1 cut(s) 94
TaiI ACGT 1 cut(s) 18
TaqI TCGA 2 cut(s) 47, 256
TasI AATT 4 cut(s) 40, 49, 105, 141
TauI GCSGC 1 cut(s) 75
TfiI GAWTC 1 cut(s) 32
TspDTI ATGAA 2 cut(s) 33, 233
XagI CCTNNNNNAGG 1 cut(s) 93
XceI RCATGY 1 cut(s) 154
XspI CTAG 1 cut(s) 122
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.