Rh3DG368100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr3D
OG0024966
Physical Location & Seq
Reverse (-)
46350458 .. 46350751
294 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh3DG368100.1

Sequence Viewer

Length: 294 bp
ATGAGCCCCGAGAACGTGTACCTTATGGGTGAATCCTCTAATTCATCGAATTGTGCTCACCCTTTAGACGGTGGCGCTAATCCTTTCCCTATTCCAGGTATTCCAATTACGGCAGTGGAACTAGCGGTAAGTATTATGGTAATTCGTTACATGTGCATCCTTATGGGTGTCCTTGCCACGATCTTCCCAGTCAAAGTCGCCGCCTCCACCATCTTCGTTGCCGAGAGCTTTGACTTGGGACTTCATAAACTCGTTCGAAAGCATAGAGAAAGTTCTCGTGAGGGGAGAGAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

97

Amino Acids

10.49

Weight (kDa)

6.27

Isoelectric Point (pI)

45.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0024966)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr4g0398621
rosa_samantha Rh3CG365000 Rh3DG368100

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 125, 201
AfaI GTAC 1 cut(s) 20
AfiI CCNNNNNNNGG 2 cut(s) 68, 95
AflIII ACRYGT 2 cut(s) 15, 150
AjnI CCWGG 1 cut(s) 94
AluBI AGCT 1 cut(s) 228
AluI AGCT 1 cut(s) 228
Alw21I GWGCWC 1 cut(s) 58
Ama87I CYCGRG 1 cut(s) 8
AspLEI GCGC 1 cut(s) 77
AsuHPI GGTGA 2 cut(s) 41, 50
AsuII TTCGAA 1 cut(s) 256
AvaI CYCGRG 1 cut(s) 8
BanII GRGCYC 1 cut(s) 8
BauI CACGAG 1 cut(s) 276
Bbv12I GWGCWC 1 cut(s) 58
BccI CCATC 1 cut(s) 218
BceAI ACGGC 1 cut(s) 126
BciT130I CCWGG 1 cut(s) 96
BfaI CTAG 1 cut(s) 122
BfoI RGCGCY 1 cut(s) 78
BisI GCNGC 1 cut(s) 201
BlsI GCNGC 1 cut(s) 202
Bme1390I CCNGG 1 cut(s) 96
BmeT110I CYCGRG 1 cut(s) 8
BmrFI CCNGG 1 cut(s) 96
BmrI ACTGGG 1 cut(s) 182
BmsI GCATC 1 cut(s) 165
BmuI ACTGGG 1 cut(s) 182
Bpu14I TTCGAA 1 cut(s) 256
Bsc4I CCNNNNNNNGG 2 cut(s) 68, 95
Bse1I ACTGG 1 cut(s) 188
BseBI CCWGG 1 cut(s) 96
BseGI GGATG 1 cut(s) 156
BseLI CCNNNNNNNGG 2 cut(s) 68, 95
BseNI ACTGG 1 cut(s) 188
BsiHKAI GWGCWC 1 cut(s) 58
BsiHKCI CYCGRG 1 cut(s) 8
BslFI GGGAC 1 cut(s) 252
BslI CCNNNNNNNGG 2 cut(s) 68, 95
BsmFI GGGAC 1 cut(s) 252
BsoBI CYCGRG 1 cut(s) 8
Bsp119I TTCGAA 1 cut(s) 256
Bsp1286I GDGCHC 2 cut(s) 8, 58
Bsp143I GATC 1 cut(s) 180
BspACI CCGC 2 cut(s) 125, 201
BspT104I TTCGAA 1 cut(s) 256
BsrI ACTGG 1 cut(s) 188
BssMI GATC 1 cut(s) 180
BssSI CACGAG 1 cut(s) 276
Bst2BI CACGAG 1 cut(s) 276
Bst2UI CCWGG 1 cut(s) 96
Bst4CI ACNGT 1 cut(s) 71
BstBI TTCGAA 1 cut(s) 256
BstENI CCTNNNNNAGG 1 cut(s) 93
BstF5I GGATG 1 cut(s) 156
BstH2I RGCGCY 1 cut(s) 78
BstHHI GCGC 1 cut(s) 77
BstKTI GATC 1 cut(s) 183
BstMBI GATC 1 cut(s) 180
BstNI CCWGG 1 cut(s) 96
BstNSI RCATGY 1 cut(s) 154
BstSCI CCNGG 1 cut(s) 94
BtsCI GGATG 1 cut(s) 156
BtsI GCAGTG 1 cut(s) 120
BtsIMutI CAGTG 1 cut(s) 120
CfoI GCGC 1 cut(s) 77
Csp6I GTAC 1 cut(s) 19
CviAII CATG 1 cut(s) 151
CviJI RGCY 2 cut(s) 6, 228
CviKI_1 RGCY 2 cut(s) 6, 228
CviQI GTAC 1 cut(s) 19
DpnI GATC 1 cut(s) 182
DpnII GATC 1 cut(s) 180
Eco24I GRGCYC 1 cut(s) 8
Eco88I CYCGRG 1 cut(s) 8
EcoNI CCTNNNNNAGG 1 cut(s) 93
EcoRII CCWGG 1 cut(s) 94
EcoT38I GRGCYC 1 cut(s) 8
FaeI CATG 1 cut(s) 154
FaiI YATR 6 cut(s) 26, 137, 152, 164, 246, 264
FaqI GGGAC 1 cut(s) 252
FatI CATG 1 cut(s) 150
Fnu4HI GCNGC 1 cut(s) 201
FokI GGATG 1 cut(s) 143
FriOI GRGCYC 1 cut(s) 8
Fsp4HI GCNGC 1 cut(s) 201
FspBI CTAG 1 cut(s) 122
GlaI GCGC 1 cut(s) 76
GluI GCNGC 1 cut(s) 201
HaeII RGCGCY 1 cut(s) 78
HhaI GCGC 1 cut(s) 77
Hin1II CATG 1 cut(s) 154
Hin6I GCGC 1 cut(s) 75
HinP1I GCGC 1 cut(s) 75
HinfI GANTC 1 cut(s) 32
HphI GGTGA 2 cut(s) 41, 50
Hpy166II GTNNAC 1 cut(s) 19
Hpy188III TCNNGA 1 cut(s) 278
Hpy8I GTNNAC 1 cut(s) 19
HpyCH4III ACNGT 1 cut(s) 71
HpyCH4IV ACGT 1 cut(s) 15
HpyCH4V TGCA 1 cut(s) 156
HpySE526I ACGT 1 cut(s) 15
Hsp92II CATG 1 cut(s) 154
HspAI GCGC 1 cut(s) 75
Kzo9I GATC 1 cut(s) 180
LpnPI CCDG 3 cut(s) 81, 108, 201
LweI GCATC 1 cut(s) 165
MaeI CTAG 1 cut(s) 122
MaeII ACGT 1 cut(s) 15
MaeIII GTNAC 1 cut(s) 146
MalI GATC 1 cut(s) 182
MboI GATC 1 cut(s) 180
MboII GAAGA 2 cut(s) 175, 205
MhlI GDGCHC 2 cut(s) 8, 58
MluCI AATT 4 cut(s) 40, 49, 105, 141
MnlI CCTC 3 cut(s) 46, 214, 274
MslI CAYNNNNRTG 1 cut(s) 161
MspR9I CCNGG 1 cut(s) 96
MvaI CCWGG 1 cut(s) 96
NdeII GATC 1 cut(s) 180
NlaIII CATG 1 cut(s) 154
NmeAIII GCCGAG 1 cut(s) 247
NspI RCATGY 1 cut(s) 154
NspV TTCGAA 1 cut(s) 256
PciI ACATGT 1 cut(s) 150
PfeI GAWTC 1 cut(s) 32
PkrI GCNGC 1 cut(s) 202
PscI ACATGT 1 cut(s) 150
Psp6I CCWGG 1 cut(s) 94
PspGI CCWGG 1 cut(s) 94
RsaI GTAC 1 cut(s) 20
RsaNI GTAC 1 cut(s) 19
RseI CAYNNNNRTG 1 cut(s) 161
SatI GCNGC 1 cut(s) 201
Sau3AI GATC 1 cut(s) 180
ScrFI CCNGG 1 cut(s) 96
SduI GDGCHC 2 cut(s) 8, 58
SetI ASST 4 cut(s) 18, 24, 100, 230
SfaNI GCATC 1 cut(s) 165
SfuI TTCGAA 1 cut(s) 256
SmiMI CAYNNNNRTG 1 cut(s) 161
Sse9I AATT 4 cut(s) 40, 49, 105, 141
SsiI CCGC 2 cut(s) 125, 201
SspMI CTAG 1 cut(s) 122
StyD4I CCNGG 1 cut(s) 94
TaaI ACNGT 1 cut(s) 71
TaiI ACGT 1 cut(s) 18
TaqI TCGA 2 cut(s) 47, 256
TasI AATT 4 cut(s) 40, 49, 105, 141
TauI GCSGC 1 cut(s) 203
TfiI GAWTC 1 cut(s) 32
TscAI CASTG 1 cut(s) 120
TspDTI ATGAA 2 cut(s) 33, 233
TspRI CASTG 1 cut(s) 120
XagI CCTNNNNNAGG 1 cut(s) 93
XceI RCATGY 1 cut(s) 154
XspI CTAG 1 cut(s) 122
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.