Rh4AG309800
ERF Family

Belongs to the protein kinase superfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0021440
Physical Location & Seq
Reverse (-)
62119974 .. 62122425
2452 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG309800.1

Sequence Viewer

Length: 363 bp
ATGGATGGCTGGAGGCAGAGGAGTCGGACTGATCGTTTAAGCTCAAAACTTGAAGGAAGGCCACCAAGTTGCAGGCTCTCACACAAAGAAATAGCCGCCTCTGTTGTAGATAGTGACAATCCAATTGGTCATATAATTTTCGCAACCATAGGAGGCAAAAATGGAGAGCCCAAACAGGCTGTGGCTATAAAGAAGGTTTTACAGTGCAGATTCAAAGAAGTGAGCTCTCTATCGAGACCAAACACTAATGGTAATGAGTTTCCACTTTCAAATGCAAGCATTCAAGAGTATGTCCCTAGCTGGAAAGCAAATTTGATGGAGAAGTACAAGAGAAAGCCATCAAGGAATTGTTTGAGAAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0009593 GO:0009653 GO:0009719 GO:0009720 GO:0009725 GO:0009726 GO:0009729 GO:0009733 GO:0009741 GO:0009742 GO:0009755 GO:0009825 GO:0009888 GO:0009965 GO:0009966 GO:0009968 GO:0009987 GO:0010015 GO:0010016 GO:0010033 GO:0010053 GO:0010054 GO:0010646 GO:0010648 GO:0014070 GO:0016020 GO:0016049 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0021700 GO:0022622 GO:0023051 GO:0023052 GO:0023057 GO:0030154 GO:0032386 GO:0032388 GO:0032501 GO:0032502 GO:0032870 GO:0032879 GO:0032880 GO:0033157 GO:0033993 GO:0036211 GO:0040007 GO:0042221 GO:0042802 GO:0043170 GO:0043401 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0046777 GO:0046822 GO:0046824 GO:0046825 GO:0046827 GO:0048364 GO:0048366 GO:0048367 GO:0048468 GO:0048469 GO:0048518 GO:0048519 GO:0048523 GO:0048545 GO:0048583 GO:0048585 GO:0048731 GO:0048764 GO:0048765 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051049 GO:0051050 GO:0051222 GO:0051223 GO:0051606 GO:0051716 GO:0060341 GO:0065007 GO:0070201 GO:0070887 GO:0071310 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071695 GO:0071704 GO:0071944 GO:0090087 GO:0090316 GO:0090558 GO:0090627 GO:0099402 GO:0140096 GO:1900457 GO:1900458 GO:1901564 GO:1901700 GO:1901701 GO:1903827 GO:1903829 GO:1904951 GO:1905392
KEGG Pathways
Metabolic & Signaling
ko04075 map04075
Pfam Domains
Protein Families
Pkinase

Protein Analysis

120

Amino Acids

13.52

Weight (kDa)

10.08

Isoelectric Point (pI)

52.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0021440)

Species Orthologous Gene IDs
rosa_chinensis RchiOBHm_Chr5g0015641
rosa_samantha Rh4AG309800 Rh4BG075800 Rh4BG317000 Rh7BG361600

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 96
AcsI RAATTY 1 cut(s) 310
AfaI GTAC 1 cut(s) 326
AgsI TTSAA 4 cut(s) 53, 214, 270, 284
AluBI AGCT 3 cut(s) 42, 225, 300
AluI AGCT 3 cut(s) 42, 225, 300
Alw21I GWGCWC 1 cut(s) 227
Alw26I GTCTC 1 cut(s) 229
AoxI GGCC 1 cut(s) 59
ApoI RAATTY 1 cut(s) 310
BanII GRGCYC 2 cut(s) 171, 227
Bbv12I GWGCWC 1 cut(s) 227
BccI CCATC 2 cut(s) 310, 346
BcgI CGANNNNNNTGC 2 cut(s) 5, 39
BcoDI GTCTC 1 cut(s) 229
BfaI CTAG 1 cut(s) 297
BisI GCNGC 1 cut(s) 96
BlsI GCNGC 1 cut(s) 97
BpmI CTGGAG 1 cut(s) 31
BsaI GGTCTC 1 cut(s) 229
BseGI GGATG 1 cut(s) 10
BseRI GAGGAG 1 cut(s) 34
BsgI GTGCAG 1 cut(s) 226
BshFI GGCC 1 cut(s) 61
BsiHKAI GWGCWC 1 cut(s) 227
BslFI GGGAC 1 cut(s) 278
BsmAI GTCTC 1 cut(s) 229
BsmFI GGGAC 1 cut(s) 278
BsmI GAATGC 1 cut(s) 279
BsnI GGCC 1 cut(s) 61
Bso31I GGTCTC 1 cut(s) 229
Bsp1286I GDGCHC 2 cut(s) 171, 227
Bsp143I GATC 1 cut(s) 31
BspACI CCGC 1 cut(s) 96
BspANI GGCC 1 cut(s) 61
BspTNI GGTCTC 1 cut(s) 229
BssMI GATC 1 cut(s) 31
Bst4CI ACNGT 1 cut(s) 204
BstC8I GCNNGC 2 cut(s) 74, 277
BstF5I GGATG 1 cut(s) 10
BstKTI GATC 1 cut(s) 34
BstMAI GTCTC 1 cut(s) 229
BstMBI GATC 1 cut(s) 31
BsuRI GGCC 1 cut(s) 61
BtsCI GGATG 1 cut(s) 10
BtsIMutI CAGTG 1 cut(s) 209
Cac8I GCNNGC 2 cut(s) 74, 277
Csp6I GTAC 1 cut(s) 325
CviQI GTAC 1 cut(s) 325
DpnI GATC 1 cut(s) 33
DpnII GATC 1 cut(s) 31
Ecl136II GAGCTC 1 cut(s) 225
Eco24I GRGCYC 2 cut(s) 171, 227
Eco31I GGTCTC 1 cut(s) 229
Eco53kI GAGCTC 1 cut(s) 225
EcoICRI GAGCTC 1 cut(s) 225
EcoT38I GRGCYC 2 cut(s) 171, 227
FaiI YATR 5 cut(s) 132, 134, 149, 188, 291
FaqI GGGAC 1 cut(s) 278
Fnu4HI GCNGC 1 cut(s) 96
FokI GGATG 1 cut(s) 17
FriOI GRGCYC 2 cut(s) 171, 227
Fsp4HI GCNGC 1 cut(s) 96
FspBI CTAG 1 cut(s) 297
GluI GCNGC 1 cut(s) 96
GsuI CTGGAG 1 cut(s) 31
HaeIII GGCC 1 cut(s) 61
HinfI GANTC 2 cut(s) 22, 210
Hpy188I TCNGA 1 cut(s) 27
Hpy188III TCNNGA 2 cut(s) 234, 284
HpyAV CCTTC 3 cut(s) 47, 51, 187
HpyCH4III ACNGT 1 cut(s) 204
HpyCH4V TGCA 3 cut(s) 72, 207, 275
Kzo9I GATC 1 cut(s) 31
LpnPI CCDG 3 cut(s) 58, 161, 286
MaeI CTAG 1 cut(s) 297
MaeIII GTNAC 1 cut(s) 113
MalI GATC 1 cut(s) 33
MboI GATC 1 cut(s) 31
MfeI CAATTG 1 cut(s) 123
MhlI GDGCHC 2 cut(s) 171, 227
MluCI AATT 5 cut(s) 123, 135, 310, 346, 358
MlyI GAGTC 1 cut(s) 31
MmeI TCCRAC 1 cut(s) 5
MnlI CCTC 4 cut(s) 6, 12, 109, 146
MseI TTAA 2 cut(s) 38, 361
MunI CAATTG 1 cut(s) 123
Mva1269I GAATGC 1 cut(s) 279
NdeII GATC 1 cut(s) 31
NmuCI GTSAC 1 cut(s) 113
PcsI WCGNNNNNNNCGW 1 cut(s) 31
PctI GAATGC 1 cut(s) 279
PfeI GAWTC 1 cut(s) 210
PkrI GCNGC 1 cut(s) 97
PleI GAGTC 1 cut(s) 30
PpsI GAGTC 1 cut(s) 30
Psp124BI GAGCTC 1 cut(s) 227
RsaI GTAC 1 cut(s) 326
RsaNI GTAC 1 cut(s) 325
SacI GAGCTC 1 cut(s) 227
SaqAI TTAA 2 cut(s) 38, 361
SatI GCNGC 1 cut(s) 96
Sau3AI GATC 1 cut(s) 31
SchI GAGTC 1 cut(s) 31
SduI GDGCHC 2 cut(s) 171, 227
SetI ASST 4 cut(s) 44, 198, 227, 302
Sse9I AATT 5 cut(s) 123, 135, 310, 346, 358
SsiI CCGC 1 cut(s) 96
SspMI CTAG 1 cut(s) 297
SstI GAGCTC 1 cut(s) 227
TaaI ACNGT 1 cut(s) 204
TaqI TCGA 1 cut(s) 233
TasI AATT 5 cut(s) 123, 135, 310, 346, 358
TatI WGTACW 1 cut(s) 324
TauI GCSGC 1 cut(s) 98
TfiI GAWTC 1 cut(s) 210
Tru1I TTAA 2 cut(s) 38, 361
Tru9I TTAA 2 cut(s) 38, 361
TscAI CASTG 1 cut(s) 209
TseFI GTSAC 1 cut(s) 113
Tsp45I GTSAC 1 cut(s) 113
TspRI CASTG 1 cut(s) 209
XapI RAATTY 1 cut(s) 310
XcmI CCANNNNNNNNNTGG 1 cut(s) 178
XspI CTAG 1 cut(s) 297
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.