Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0021440

Physical Location & Seq

Genomic Coordinates Reverse (-)

48445933 .. 48448980

Gene Structure 3048 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG317000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 435 bp

ATGGATAGCTGCCACGTGGGTGGTGGTGATGAGAAGAAACCTGGACAGAAATGTGATGGGCTGCTAAGACTCACCGTCAAACGCAGCTCAAAACTTGAAGGAAGGCCACCAAGTTGCAGGCTCTCACACAAAGAAATAGCCGCCTCTGTTGTAGATAGTGACAATCCAATTGGTCATATAATTTTCGCAACCATAGGAGGCAAAAATGGAGAGCCCAAACAGACCATTAGTTATATAGCAGAACCTGTTCTGGGAACTGGATCATTTGAAATTGTTTTCAGATTCAAAGAAGTGAGCTCTCTATCGAGACCAAACACTAATGGTAATGAGTTTCCACTTTCAAATGCAAGCATTCAAGAGTATGTCCCTAGCTGGAAAGCAAATTTGATGGAGAAGTACAAGAGAAAGCCATCAAGGAATTGTTTGAGAAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0005488 GO:0005515 GO:0005575 GO:0005623 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0008152 GO:0009593 GO:0009653 GO:0009719 GO:0009720 GO:0009725 GO:0009726 GO:0009729 GO:0009733 GO:0009741 GO:0009742 GO:0009755 GO:0009825 GO:0009888 GO:0009965 GO:0009966 GO:0009968 GO:0009987 GO:0010015 GO:0010016 GO:0010033 GO:0010053 GO:0010054 GO:0010646 GO:0010648 GO:0014070 GO:0016020 GO:0016049 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019538 GO:0021700 GO:0022622 GO:0023051 GO:0023052 GO:0023057 GO:0030154 GO:0032386 GO:0032388 GO:0032501 GO:0032502 GO:0032870 GO:0032879 GO:0032880 GO:0033157 GO:0033993 GO:0036211 GO:0040007 GO:0042221 GO:0042802 GO:0043170 GO:0043401 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044464 GO:0046777 GO:0046822 GO:0046824 GO:0046825 GO:0046827 GO:0048364 GO:0048366 GO:0048367 GO:0048468 GO:0048469 GO:0048518 GO:0048519 GO:0048523 GO:0048545 GO:0048583 GO:0048585 GO:0048731 GO:0048764 GO:0048765 GO:0048827 GO:0048856 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051049 GO:0051050 GO:0051222 GO:0051223 GO:0051606 GO:0051716 GO:0060341 GO:0065007 GO:0070201 GO:0070887 GO:0071310 GO:0071367 GO:0071383 GO:0071396 GO:0071407 GO:0071495 GO:0071695 GO:0071704 GO:0071944 GO:0090087 GO:0090316 GO:0090558 GO:0090627 GO:0099402 GO:0140096 GO:1900457 GO:1900458 GO:1901564 GO:1901700 GO:1901701 GO:1903827 GO:1903829 GO:1904951 GO:1905392

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Pkinase

Protein Analysis

144

Amino Acids

15.85

Weight (kDa)

9.39

Isoelectric Point (pI)

54.92

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0021440)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr5g0015641
rosa_samantha	Rh4AG309800 Rh4BG075800 Rh4BG317000 Rh7BG361600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	141
AclWI	GGATC	1 cut(s)	268
AcsI	RAATTY	1 cut(s)	382
AcvI	CACGTG	1 cut(s)	16
AfaI	GTAC	1 cut(s)	398
AfiI	CCNNNNNNNGG	1 cut(s)	251
AgsI	TTSAA	5 cut(s)	98, 269, 286, 342, 356
AhdI	GACNNNNNGTC	1 cut(s)	74
AjnI	CCWGG	1 cut(s)	40
AleI	CACNNNNGTG	1 cut(s)	18
AluBI	AGCT	4 cut(s)	9, 87, 297, 372
AluI	AGCT	4 cut(s)	9, 87, 297, 372
Alw21I	GWGCWC	1 cut(s)	299
Alw26I	GTCTC	1 cut(s)	301
AlwI	GGATC	1 cut(s)	268
AlwNI	CAGNNNCTG	1 cut(s)	245
AoxI	GGCC	1 cut(s)	104
ApeKI	GCWGC	3 cut(s)	9, 61, 84
ApoI	RAATTY	1 cut(s)	382
Asp700I	GAANNNNTTC	1 cut(s)	246
AsuHPI	GGTGA	2 cut(s)	38, 64
BanII	GRGCYC	2 cut(s)	216, 299
BbrPI	CACGTG	1 cut(s)	16
Bbv12I	GWGCWC	1 cut(s)	299
BbvI	GCAGC	2 cut(s)	48, 96
BccI	CCATC	3 cut(s)	50, 382, 418
BciT130I	CCWGG	1 cut(s)	42
BcoDI	GTCTC	1 cut(s)	301
BfaI	CTAG	1 cut(s)	369
BisI	GCNGC	4 cut(s)	10, 62, 85, 141
BlsI	GCNGC	4 cut(s)	11, 63, 86, 142
Bme1390I	CCNGG	1 cut(s)	42
BmeRI	GACNNNNNGTC	1 cut(s)	74
BmrFI	CCNGG	1 cut(s)	42
BsaAI	YACGTR	1 cut(s)	16
BsaI	GGTCTC	1 cut(s)	301
Bsc4I	CCNNNNNNNGG	1 cut(s)	251
Bse1I	ACTGG	1 cut(s)	262
BseBI	CCWGG	1 cut(s)	42
BseLI	CCNNNNNNNGG	1 cut(s)	251
BseNI	ACTGG	1 cut(s)	262
BseXI	GCAGC	2 cut(s)	48, 96
BshFI	GGCC	1 cut(s)	106
BsiHKAI	GWGCWC	1 cut(s)	299
BslFI	GGGAC	1 cut(s)	350
BslI	CCNNNNNNNGG	1 cut(s)	251
BsmAI	GTCTC	1 cut(s)	301
BsmFI	GGGAC	1 cut(s)	350
BsmI	GAATGC	1 cut(s)	351
BsnI	GGCC	1 cut(s)	106
Bso31I	GGTCTC	1 cut(s)	301
Bsp1286I	GDGCHC	2 cut(s)	216, 299
Bsp143I	GATC	1 cut(s)	260
BspACI	CCGC	1 cut(s)	141
BspANI	GGCC	1 cut(s)	106
BspPI	GGATC	1 cut(s)	268
BspTNI	GGTCTC	1 cut(s)	301
BsrI	ACTGG	1 cut(s)	262
BssMI	GATC	1 cut(s)	260
Bst2UI	CCWGG	1 cut(s)	42
Bst4CI	ACNGT	1 cut(s)	76
BstBAI	YACGTR	1 cut(s)	16
BstC8I	GCNNGC	2 cut(s)	119, 349
BstDEI	CTNAG	1 cut(s)	65
BstKTI	GATC	1 cut(s)	263
BstMAI	GTCTC	1 cut(s)	301
BstMBI	GATC	1 cut(s)	260
BstNI	CCWGG	1 cut(s)	42
BstSCI	CCNGG	1 cut(s)	40
BstV1I	GCAGC	2 cut(s)	48, 96
BstXI	CCANNNNNNTGG	1 cut(s)	20
BsuRI	GGCC	1 cut(s)	106
Cac8I	GCNNGC	2 cut(s)	119, 349
CaiI	CAGNNNCTG	1 cut(s)	245
Csp6I	GTAC	1 cut(s)	397
CviQI	GTAC	1 cut(s)	397
DdeI	CTNAG	1 cut(s)	65
DpnI	GATC	1 cut(s)	262
DpnII	GATC	1 cut(s)	260
DriI	GACNNNNNGTC	1 cut(s)	74
Eam1105I	GACNNNNNGTC	1 cut(s)	74
Ecl136II	GAGCTC	1 cut(s)	297
Eco24I	GRGCYC	2 cut(s)	216, 299
Eco31I	GGTCTC	1 cut(s)	301
Eco53kI	GAGCTC	1 cut(s)	297
Eco72I	CACGTG	1 cut(s)	16
EcoICRI	GAGCTC	1 cut(s)	297
EcoRII	CCWGG	1 cut(s)	40
EcoT38I	GRGCYC	2 cut(s)	216, 299
FaiI	YATR	6 cut(s)	177, 179, 194, 234, 236, 363
FaqI	GGGAC	1 cut(s)	350
Fnu4HI	GCNGC	4 cut(s)	10, 62, 85, 141
FriOI	GRGCYC	2 cut(s)	216, 299
Fsp4HI	GCNGC	4 cut(s)	10, 62, 85, 141
FspBI	CTAG	1 cut(s)	369
GluI	GCNGC	4 cut(s)	10, 62, 85, 141
HaeIII	GGCC	1 cut(s)	106
HinfI	GANTC	2 cut(s)	69, 282
HphI	GGTGA	2 cut(s)	38, 64
Hpy188I	TCNGA	1 cut(s)	281
Hpy188III	TCNNGA	2 cut(s)	306, 356
HpyAV	CCTTC	2 cut(s)	92, 96
HpyCH4III	ACNGT	1 cut(s)	76
HpyCH4IV	ACGT	1 cut(s)	15
HpyCH4V	TGCA	2 cut(s)	117, 347
HpyF3I	CTNAG	1 cut(s)	65
HpySE526I	ACGT	1 cut(s)	15
Kzo9I	GATC	1 cut(s)	260
LpnPI	CCDG	7 cut(s)	27, 54, 103, 236, 243, 258, 358
Lsp1109I	GCAGC	2 cut(s)	48, 96
MaeI	CTAG	1 cut(s)	369
MaeII	ACGT	1 cut(s)	15
MaeIII	GTNAC	1 cut(s)	158
MalI	GATC	1 cut(s)	262
MboI	GATC	1 cut(s)	260
MboII	GAAGA	1 cut(s)	46
MfeI	CAATTG	1 cut(s)	168
MhlI	GDGCHC	2 cut(s)	216, 299
MluCI	AATT	6 cut(s)	168, 180, 270, 382, 418, 430
MlyI	GAGTC	1 cut(s)	63
MnlI	CCTC	2 cut(s)	154, 191
MroXI	GAANNNNTTC	1 cut(s)	246
MseI	TTAA	1 cut(s)	433
MslI	CAYNNNNRTG	1 cut(s)	18
MspR9I	CCNGG	1 cut(s)	42
MunI	CAATTG	1 cut(s)	168
Mva1269I	GAATGC	1 cut(s)	351
MvaI	CCWGG	1 cut(s)	42
NdeII	GATC	1 cut(s)	260
NmuCI	GTSAC	1 cut(s)	158
OliI	CACNNNNGTG	1 cut(s)	18
PctI	GAATGC	1 cut(s)	351
PdmI	GAANNNNTTC	1 cut(s)	246
PfeI	GAWTC	1 cut(s)	282
PkrI	GCNGC	4 cut(s)	11, 63, 86, 142
PleI	GAGTC	1 cut(s)	63
PmaCI	CACGTG	1 cut(s)	16
PmlI	CACGTG	1 cut(s)	16
PpsI	GAGTC	1 cut(s)	63
Ppu21I	YACGTR	1 cut(s)	16
Psp124BI	GAGCTC	1 cut(s)	299
Psp6I	CCWGG	1 cut(s)	40
PspCI	CACGTG	1 cut(s)	16
PspGI	CCWGG	1 cut(s)	40
PstNI	CAGNNNCTG	1 cut(s)	245
RsaI	GTAC	1 cut(s)	398
RsaNI	GTAC	1 cut(s)	397
RseI	CAYNNNNRTG	1 cut(s)	18
SacI	GAGCTC	1 cut(s)	299
SaqAI	TTAA	1 cut(s)	433
SatI	GCNGC	4 cut(s)	10, 62, 85, 141
Sau3AI	GATC	1 cut(s)	260
SchI	GAGTC	1 cut(s)	63
ScrFI	CCNGG	1 cut(s)	42
SduI	GDGCHC	2 cut(s)	216, 299
SetI	ASST	7 cut(s)	11, 18, 43, 89, 247, 299, 374
SmiMI	CAYNNNNRTG	1 cut(s)	18
Sse9I	AATT	6 cut(s)	168, 180, 270, 382, 418, 430
SsiI	CCGC	1 cut(s)	141
SspMI	CTAG	1 cut(s)	369
SstI	GAGCTC	1 cut(s)	299
StyD4I	CCNGG	1 cut(s)	40
TaaI	ACNGT	1 cut(s)	76
TaiI	ACGT	1 cut(s)	18
TaqI	TCGA	1 cut(s)	305
TasI	AATT	6 cut(s)	168, 180, 270, 382, 418, 430
TatI	WGTACW	1 cut(s)	396
TauI	GCSGC	1 cut(s)	143
TfiI	GAWTC	1 cut(s)	282
Tru1I	TTAA	1 cut(s)	433
Tru9I	TTAA	1 cut(s)	433
TseFI	GTSAC	1 cut(s)	158
TseI	GCWGC	3 cut(s)	9, 61, 84
Tsp45I	GTSAC	1 cut(s)	158
XapI	RAATTY	1 cut(s)	382
XcmI	CCANNNNNNNNNTGG	1 cut(s)	20
XmnI	GAANNNNTTC	1 cut(s)	246
XspI	CTAG	1 cut(s)	369

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.