Rh4AG404700

Leucine-rich repeats, typical (most populated) subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0026096
Physical Location & Seq
Reverse (-)
70676234 .. 70676536
303 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG404700.1

Sequence Viewer

Length: 303 bp
ATGGATGGTAAACCTGATTTTTTGAGTGGACATTTCGAGGAGTTATTAACATTGAAAAATTTCGTCTGCCTTGAGGTTTTGCATGAAATTGTAGTGCAAATTGGCCCTCACTGCAAGCGCTTTACGGATTTAACGGTTTATCATACTAGTCTTTGTGAAGTTGAGGCATCGATGATTGTGAAGTTACTGCCAAATCTTAAGAAGTTGTCATTGACTCATTGTCGCATTGATCAGGACAGTGTTGTTAGTTTACTGAGGAGGTACGGTGCAAAGAGCTTGTGCTTTTCAATGCCAGCCAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_8 ubiquitin

Protein Analysis

100

Amino Acids

11.33

Weight (kDa)

6.94

Isoelectric Point (pI)

26.27

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0026096)

Species Orthologous Gene IDs
rosa_samantha Rh4AG404700 Rh4BG415700 Rh4DG410200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AcsI RAATTY 1 cut(s) 58
AfaI GTAC 1 cut(s) 263
AfeI AGCGCT 1 cut(s) 119
AflII CTTAAG 1 cut(s) 197
AgsI TTSAA 2 cut(s) 55, 288
AhdI GACNNNNNGTC 1 cut(s) 219
AhlI ACTAGT 1 cut(s) 146
AluBI AGCT 1 cut(s) 276
AluI AGCT 1 cut(s) 276
Aor51HI AGCGCT 1 cut(s) 119
AoxI GGCC 1 cut(s) 103
ApoI RAATTY 1 cut(s) 58
Asp700I GAANNNNTTC 1 cut(s) 59
AspLEI GCGC 1 cut(s) 120
AspS9I GGNCC 1 cut(s) 104
BclI TGATCA 1 cut(s) 229
BcuI ACTAGT 1 cut(s) 146
BfaI CTAG 1 cut(s) 147
BfoI RGCGCY 1 cut(s) 121
BfrI CTTAAG 1 cut(s) 197
BmeRI GACNNNNNGTC 1 cut(s) 219
BmgT120I GGNCC 1 cut(s) 104
BmsI GCATC 1 cut(s) 176
BpuEI CTTGAG 1 cut(s) 92
Bsa29I ATCGAT 1 cut(s) 170
BsaXI ACNNNNNCTCC 2 cut(s) 250, 280
BseCI ATCGAT 1 cut(s) 170
BseGI GGATG 1 cut(s) 10
BseMII CTCAG 1 cut(s) 245
BseRI GAGGAG 2 cut(s) 53, 271
BshFI GGCC 1 cut(s) 105
BshVI ATCGAT 1 cut(s) 170
BsnI GGCC 1 cut(s) 105
Bsp143I GATC 1 cut(s) 229
BspANI GGCC 1 cut(s) 105
BspCNI CTCAG 1 cut(s) 246
BspDI ATCGAT 1 cut(s) 170
BspTI CTTAAG 1 cut(s) 197
BssMI GATC 1 cut(s) 229
Bst4CI ACNGT 3 cut(s) 136, 239, 266
BstAFI CTTAAG 1 cut(s) 197
BstC8I GCNNGC 2 cut(s) 116, 294
BstDEI CTNAG 1 cut(s) 254
BstF5I GGATG 1 cut(s) 10
BstH2I RGCGCY 1 cut(s) 121
BstHHI GCGC 1 cut(s) 120
BstKTI GATC 1 cut(s) 232
BstMBI GATC 1 cut(s) 229
BstMWI GCNNNNNNNGC 1 cut(s) 111
Bsu15I ATCGAT 1 cut(s) 170
BsuRI GGCC 1 cut(s) 105
BsuTUI ATCGAT 1 cut(s) 170
BtsCI GGATG 1 cut(s) 10
BtsI GCAGTG 1 cut(s) 109
BtsIMutI CAGTG 2 cut(s) 109, 244
Cac8I GCNNGC 2 cut(s) 116, 294
CfoI GCGC 1 cut(s) 120
Cfr13I GGNCC 1 cut(s) 104
ClaI ATCGAT 1 cut(s) 170
Csp6I GTAC 1 cut(s) 262
CviAII CATG 1 cut(s) 83
CviJI RGCY 3 cut(s) 105, 276, 296
CviKI_1 RGCY 3 cut(s) 105, 276, 296
CviQI GTAC 1 cut(s) 262
DdeI CTNAG 1 cut(s) 254
DpnI GATC 1 cut(s) 231
DpnII GATC 1 cut(s) 229
DriI GACNNNNNGTC 1 cut(s) 219
Eam1105I GACNNNNNGTC 1 cut(s) 219
Eco47III AGCGCT 1 cut(s) 119
FaeI CATG 1 cut(s) 86
FaiI YATR 2 cut(s) 84, 144
FatI CATG 1 cut(s) 82
FbaI TGATCA 1 cut(s) 229
FokI GGATG 1 cut(s) 17
FspBI CTAG 1 cut(s) 147
GlaI GCGC 1 cut(s) 119
HaeII RGCGCY 1 cut(s) 121
HaeIII GGCC 1 cut(s) 105
HhaI GCGC 1 cut(s) 120
Hin1II CATG 1 cut(s) 86
Hin6I GCGC 1 cut(s) 118
HinP1I GCGC 1 cut(s) 118
HinfI GANTC 1 cut(s) 214
Hpy166II GTNNAC 3 cut(s) 11, 29, 251
Hpy188III TCNNGA 1 cut(s) 233
Hpy8I GTNNAC 3 cut(s) 11, 29, 251
HpyCH4III ACNGT 3 cut(s) 136, 239, 266
HpyCH4V TGCA 4 cut(s) 82, 97, 114, 269
HpyF10VI GCNNNNNNNGC 1 cut(s) 111
HpyF3I CTNAG 1 cut(s) 254
Hsp92II CATG 1 cut(s) 86
HspAI GCGC 1 cut(s) 118
Ksp22I TGATCA 1 cut(s) 229
Kzo9I GATC 1 cut(s) 229
LpnPI CCDG 2 cut(s) 27, 218
LweI GCATC 1 cut(s) 176
MaeI CTAG 1 cut(s) 147
MaeIII GTNAC 1 cut(s) 183
MalI GATC 1 cut(s) 231
MboI GATC 1 cut(s) 229
MfeI CAATTG 1 cut(s) 298
MluCI AATT 4 cut(s) 58, 87, 99, 298
MlyI GAGTC 1 cut(s) 208
MnlI CCTC 6 cut(s) 31, 67, 117, 157, 249, 252
MroXI GAANNNNTTC 1 cut(s) 59
MseI TTAA 3 cut(s) 47, 131, 198
MspCI CTTAAG 1 cut(s) 197
MunI CAATTG 1 cut(s) 298
MwoI GCNNNNNNNGC 1 cut(s) 111
NdeII GATC 1 cut(s) 229
NlaIII CATG 1 cut(s) 86
PdmI GAANNNNTTC 1 cut(s) 59
PleI GAGTC 1 cut(s) 208
PpsI GAGTC 1 cut(s) 208
PspPI GGNCC 1 cut(s) 104
RsaI GTAC 1 cut(s) 263
RsaNI GTAC 1 cut(s) 262
SaqAI TTAA 3 cut(s) 47, 131, 198
Sau3AI GATC 1 cut(s) 229
Sau96I GGNCC 1 cut(s) 104
SchI GAGTC 1 cut(s) 208
SetI ASST 4 cut(s) 16, 78, 263, 278
SfaNI GCATC 1 cut(s) 176
SgeI CNNG 8 cut(s) 26, 49, 83, 95, 127, 159, 245, 289
SmlI CTYRAG 2 cut(s) 71, 197
SmoI CTYRAG 2 cut(s) 71, 197
SpeI ACTAGT 1 cut(s) 146
Sse9I AATT 4 cut(s) 58, 87, 99, 298
SspMI CTAG 1 cut(s) 147
TaaI ACNGT 3 cut(s) 136, 239, 266
TaqI TCGA 2 cut(s) 36, 170
TasI AATT 4 cut(s) 58, 87, 99, 298
Tru1I TTAA 3 cut(s) 47, 131, 198
Tru9I TTAA 3 cut(s) 47, 131, 198
TscAI CASTG 2 cut(s) 116, 244
TspDTI ATGAA 1 cut(s) 99
TspGWI ACGGA 1 cut(s) 140
TspRI CASTG 2 cut(s) 116, 244
Vha464I CTTAAG 1 cut(s) 197
XapI RAATTY 1 cut(s) 58
XmnI GAANNNNTTC 1 cut(s) 59
XspI CTAG 1 cut(s) 147
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.