Rh4DG410200

Leucine-rich repeats, typical (most populated) subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0026096
Physical Location & Seq
Reverse (-)
62213319 .. 62220718
7400 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG410200.1

Sequence Viewer

Length: 579 bp
ATGTTTGTTTCGGATGAATGCCCTTTCCTAAAAAATGCATGGTTGCCAGATGATTTGGTAATTTTCAAGACTTCTCACGTTATTCCACAGTTGATTGGGAAGTGGAAATTCTTAGAGAGCTTGGTTTTGAGATTTGGGATGTTGGACATCATGGACCAGTATGAAATAGATGGTAAGCCTGATTTTTTTAGTGGACATTTCGGGGAGTTTTTAACGTTGAAAAATTTCGTCTGCCTTGAGGTTTTGCATGAAATTGTAGTGCAAATTGGCGCTCACTGCAAGCGCTTTACGGATTTAACGGTTTATCATACTAGTCCTTGTGAAGTTGAGGCATCGATGATTGTGAAGTTACTGCCAAATCTCAAGAAGTTGTCATTGAATCATTGTCGCATTGATCAGGACAGTGTTGTTAGTTTACTGAGGAGGTGCAAAGAGCTTGTGCTTTTCAATGCCAGCCAATTGAAGGCTTTGAAGAGAACTCTCTGTTTCAAAGATGCTGGGGATGACTTTAGAGCCACCAAGTTTGCTGCTTTGCCACCGTTGCTTTTGGAATTGGATGGAGAGAGATTTCATTGGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRR_8 ubiquitin

Protein Analysis

192

Amino Acids

22.13

Weight (kDa)

6.37

Isoelectric Point (pI)

24.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0026096)

Species Orthologous Gene IDs
rosa_samantha Rh4AG404700 Rh4BG415700 Rh4DG410200

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclI AACGTT 1 cut(s) 215
AcsI RAATTY 2 cut(s) 107, 223
AfeI AGCGCT 1 cut(s) 284
AfiI CCNNNNNNNGG 1 cut(s) 463
AgsI TTSAA 7 cut(s) 67, 220, 379, 448, 463, 472, 490
AhlI ACTAGT 1 cut(s) 311
AluBI AGCT 2 cut(s) 120, 436
AluI AGCT 2 cut(s) 120, 436
Aor51HI AGCGCT 1 cut(s) 284
ApeKI GCWGC 1 cut(s) 527
ApoI RAATTY 2 cut(s) 107, 223
Asp700I GAANNNNTTC 1 cut(s) 224
AspLEI GCGC 2 cut(s) 272, 285
AspS9I GGNCC 1 cut(s) 154
AvaII GGWCC 1 cut(s) 154
BbvI GCAGC 1 cut(s) 514
BccI CCATC 2 cut(s) 164, 551
BclI TGATCA 1 cut(s) 394
BcuI ACTAGT 1 cut(s) 311
BfaI CTAG 1 cut(s) 312
BfoI RGCGCY 2 cut(s) 273, 286
BisI GCNGC 1 cut(s) 528
BlsI GCNGC 1 cut(s) 529
Bme18I GGWCC 1 cut(s) 154
BmgT120I GGNCC 1 cut(s) 154
BmsI GCATC 2 cut(s) 341, 484
BpuEI CTTGAG 2 cut(s) 257, 347
Bsa29I ATCGAT 1 cut(s) 335
Bsc4I CCNNNNNNNGG 1 cut(s) 463
Bse1I ACTGG 1 cut(s) 157
BseCI ATCGAT 1 cut(s) 335
BseGI GGATG 4 cut(s) 19, 144, 508, 562
BseLI CCNNNNNNNGG 1 cut(s) 463
BseMII CTCAG 1 cut(s) 410
BseNI ACTGG 1 cut(s) 157
BseRI GAGGAG 1 cut(s) 436
BseXI GCAGC 1 cut(s) 514
BseYI CCCAGC 1 cut(s) 497
BshVI ATCGAT 1 cut(s) 335
BslI CCNNNNNNNGG 1 cut(s) 463
BsmI GAATGC 1 cut(s) 23
Bsp143I GATC 1 cut(s) 394
BspCNI CTCAG 1 cut(s) 411
BspDI ATCGAT 1 cut(s) 335
BsrI ACTGG 1 cut(s) 157
BssMI GATC 1 cut(s) 394
Bst4CI ACNGT 4 cut(s) 90, 301, 404, 540
Bst6I CTCTTC 1 cut(s) 467
BstC8I GCNNGC 2 cut(s) 281, 454
BstDEI CTNAG 2 cut(s) 112, 419
BstF5I GGATG 4 cut(s) 19, 144, 508, 562
BstH2I RGCGCY 2 cut(s) 273, 286
BstHHI GCGC 2 cut(s) 272, 285
BstKTI GATC 1 cut(s) 397
BstMBI GATC 1 cut(s) 394
BstMWI GCNNNNNNNGC 2 cut(s) 276, 541
BstV1I GCAGC 1 cut(s) 514
Bsu15I ATCGAT 1 cut(s) 335
BsuTUI ATCGAT 1 cut(s) 335
BtsCI GGATG 4 cut(s) 19, 144, 508, 562
BtsI GCAGTG 1 cut(s) 274
BtsIMutI CAGTG 2 cut(s) 274, 409
Cac8I GCNNGC 2 cut(s) 281, 454
CfoI GCGC 2 cut(s) 272, 285
Cfr13I GGNCC 1 cut(s) 154
ClaI ATCGAT 1 cut(s) 335
CspCI CAANNNNNGTGG 2 cut(s) 505, 540
CviAII CATG 3 cut(s) 39, 151, 248
CviJI RGCY 6 cut(s) 120, 178, 436, 456, 467, 515
CviKI_1 RGCY 6 cut(s) 120, 178, 436, 456, 467, 515
DdeI CTNAG 2 cut(s) 112, 419
DpnI GATC 1 cut(s) 396
DpnII GATC 1 cut(s) 394
Eam1104I CTCTTC 1 cut(s) 467
EarI CTCTTC 1 cut(s) 467
Eco47I GGWCC 1 cut(s) 154
Eco47III AGCGCT 1 cut(s) 284
EcoT22I ATGCAT 1 cut(s) 40
FaeI CATG 3 cut(s) 42, 154, 251
FaiI YATR 5 cut(s) 40, 152, 162, 249, 309
FatI CATG 3 cut(s) 38, 150, 247
FbaI TGATCA 1 cut(s) 394
Fnu4HI GCNGC 1 cut(s) 528
FokI GGATG 4 cut(s) 26, 151, 515, 569
Fsp4HI GCNGC 1 cut(s) 528
FspBI CTAG 1 cut(s) 312
GlaI GCGC 2 cut(s) 271, 284
GluI GCNGC 1 cut(s) 528
GsaI CCCAGC 1 cut(s) 501
HaeII RGCGCY 2 cut(s) 273, 286
HhaI GCGC 2 cut(s) 272, 285
Hin1II CATG 3 cut(s) 42, 154, 251
Hin6I GCGC 2 cut(s) 270, 283
HinP1I GCGC 2 cut(s) 270, 283
HinfI GANTC 1 cut(s) 379
Hpy166II GTNNAC 2 cut(s) 194, 416
Hpy188I TCNGA 1 cut(s) 13
Hpy188III TCNNGA 3 cut(s) 67, 364, 398
Hpy8I GTNNAC 2 cut(s) 194, 416
HpyAV CCTTC 1 cut(s) 457
HpyCH4III ACNGT 4 cut(s) 90, 301, 404, 540
HpyCH4IV ACGT 2 cut(s) 78, 215
HpyCH4V TGCA 5 cut(s) 38, 247, 262, 279, 429
HpyF10VI GCNNNNNNNGC 2 cut(s) 276, 541
HpyF3I CTNAG 2 cut(s) 112, 419
HpySE526I ACGT 2 cut(s) 78, 215
Hsp92II CATG 3 cut(s) 42, 154, 251
HspAI GCGC 2 cut(s) 270, 283
Ksp22I TGATCA 1 cut(s) 394
Kzo9I GATC 1 cut(s) 394
LpnPI CCDG 6 cut(s) 60, 170, 192, 383, 466, 483
Lsp1109I GCAGC 1 cut(s) 514
LweI GCATC 2 cut(s) 341, 484
MaeI CTAG 1 cut(s) 312
MaeII ACGT 2 cut(s) 78, 215
MaeIII GTNAC 1 cut(s) 348
MalI GATC 1 cut(s) 396
MboI GATC 1 cut(s) 394
MboII GAAGA 1 cut(s) 484
MfeI CAATTG 1 cut(s) 458
MluCI AATT 7 cut(s) 60, 107, 223, 252, 264, 458, 551
MmeI TCCRAC 1 cut(s) 123
MnlI CCTC 4 cut(s) 232, 322, 414, 417
Mph1103I ATGCAT 1 cut(s) 40
MroXI GAANNNNTTC 1 cut(s) 224
MseI TTAA 2 cut(s) 212, 296
MunI CAATTG 1 cut(s) 458
Mva1269I GAATGC 1 cut(s) 23
MwoI GCNNNNNNNGC 2 cut(s) 276, 541
NdeII GATC 1 cut(s) 394
NlaIII CATG 3 cut(s) 42, 154, 251
NsiI ATGCAT 1 cut(s) 40
PctI GAATGC 1 cut(s) 23
PdmI GAANNNNTTC 1 cut(s) 224
PfeI GAWTC 1 cut(s) 379
PkrI GCNGC 1 cut(s) 529
Psp1406I AACGTT 1 cut(s) 215
PspFI CCCAGC 1 cut(s) 497
PspPI GGNCC 1 cut(s) 154
SaqAI TTAA 2 cut(s) 212, 296
SatI GCNGC 1 cut(s) 528
Sau3AI GATC 1 cut(s) 394
Sau96I GGNCC 1 cut(s) 154
SetI ASST 6 cut(s) 81, 122, 218, 243, 428, 438
SfaNI GCATC 2 cut(s) 341, 484
SinI GGWCC 1 cut(s) 154
SmlI CTYRAG 2 cut(s) 236, 362
SmoI CTYRAG 2 cut(s) 236, 362
SpeI ACTAGT 1 cut(s) 311
Sse9I AATT 7 cut(s) 60, 107, 223, 252, 264, 458, 551
SspMI CTAG 1 cut(s) 312
TaaI ACNGT 4 cut(s) 90, 301, 404, 540
TaiI ACGT 2 cut(s) 81, 218
TaqI TCGA 1 cut(s) 335
TasI AATT 7 cut(s) 60, 107, 223, 252, 264, 458, 551
TfiI GAWTC 1 cut(s) 379
Tru1I TTAA 2 cut(s) 212, 296
Tru9I TTAA 2 cut(s) 212, 296
TscAI CASTG 2 cut(s) 281, 409
TseI GCWGC 1 cut(s) 527
TspDTI ATGAA 4 cut(s) 30, 177, 264, 560
TspGWI ACGGA 1 cut(s) 305
TspRI CASTG 2 cut(s) 281, 409
VpaK11BI GGWCC 1 cut(s) 154
XapI RAATTY 2 cut(s) 107, 223
XmnI GAANNNNTTC 1 cut(s) 224
XspI CTAG 1 cut(s) 312
Zsp2I ATGCAT 1 cut(s) 40
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.