Rh4BG020800

G-type lectin S-receptor-like serine threonine-protein kinase

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
Physical Location & Seq
Forward (+)
3262157 .. 3262588
432 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG020800.1

Sequence Viewer

Length: 432 bp
ATGAGGGGGCCAATTAATTTAGCACATTATAAGAATTCATTATTTATTGTCTGTTACCCAAATGTTGCTTCCGGTTCAGTTCCAACTCTCTGTTTGATAGTTTTATTTGCACAATCAGGACACGTCGAATTAACAGCACGACGCTTGGGATCAACTAGTATGATTAAGATTCATAGAGACGGTCTTCGAGAATATATAGGGAAGCATGATCCCTCAGAGCTAAAGATATATGATTTTGATAGCATACTAATCGCCACAGACAGCTTCAGCATCACAAACAAACTTGGGCAAGGAGGCTTTGGCCCAGTTTATAAGGTATTTTCTTTGCTAAGCAAAACATATATAGCACTTCAGAAGGTTCAAGATATAGACATGCATGCAATGACTAATTTGTGGACGTGTAGGGGATGCTACCAGAAGGGAAGGAAATAG

Protein Analysis

143

Amino Acids

16.0

Weight (kDa)

9.36

Isoelectric Point (pI)

35.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0025683)

Species Orthologous Gene IDs
rosa_multiflora Rmu_co8162910.1_g000001
rosa_roxburghii Rroxscaffold_1G00070220
rosa_samantha Rh4BG020800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 30, 312
AclWI GGATC 2 cut(s) 157, 203
AcsI RAATTY 1 cut(s) 34
AcuI CTGAAG 2 cut(s) 250, 335
AflIII ACRYGT 2 cut(s) 121, 398
AgsI TTSAA 1 cut(s) 362
AhlI ACTAGT 1 cut(s) 155
AjiI CACGTC 2 cut(s) 124, 399
AjuI GAANNNNNNNTTGG 2 cut(s) 52, 84
AluBI AGCT 2 cut(s) 220, 264
AluI AGCT 2 cut(s) 220, 264
Alw26I GTCTC 1 cut(s) 171
AlwI GGATC 2 cut(s) 157, 203
AoxI GGCC 2 cut(s) 8, 301
ApoI RAATTY 1 cut(s) 34
AseI ATTAAT 1 cut(s) 15
AspS9I GGNCC 2 cut(s) 8, 302
BbsI GAAGAC 1 cut(s) 176
BcgI CGANNNNNNTGC 2 cut(s) 232, 266
BcoDI GTCTC 1 cut(s) 171
BcuI ACTAGT 1 cut(s) 155
BfaI CTAG 1 cut(s) 156
BlpI GCTNAGC 1 cut(s) 329
BmgBI CACGTC 2 cut(s) 124, 399
BmgT120I GGNCC 2 cut(s) 8, 302
BmiI GGNNCC 1 cut(s) 9
BmrI ACTGGG 1 cut(s) 299
BmsI GCATC 2 cut(s) 279, 398
BmuI ACTGGG 1 cut(s) 299
BpiI GAAGAC 1 cut(s) 176
Bpu1102I GCTNAGC 1 cut(s) 329
BsaWI WCCGGW 1 cut(s) 71
Bse1I ACTGG 1 cut(s) 305
Bse3DI GCAATG 1 cut(s) 387
BseGI GGATG 1 cut(s) 413
BseMI GCAATG 1 cut(s) 387
BseMII CTCAG 1 cut(s) 228
BseNI ACTGG 1 cut(s) 305
BshFI GGCC 2 cut(s) 10, 303
BsiSI CCGG 1 cut(s) 72
BsmAI GTCTC 1 cut(s) 171
BsmBI CGTCTC 1 cut(s) 171
BsnI GGCC 2 cut(s) 10, 303
Bsp143I GATC 2 cut(s) 149, 208
Bsp1720I GCTNAGC 1 cut(s) 329
BspANI GGCC 2 cut(s) 10, 303
BspCNI CTCAG 1 cut(s) 227
BspLI GGNNCC 1 cut(s) 9
BspPI GGATC 2 cut(s) 157, 203
BsrDI GCAATG 1 cut(s) 387
BsrI ACTGG 1 cut(s) 305
BssMI GATC 2 cut(s) 149, 208
Bst4CI ACNGT 1 cut(s) 182
BstC8I GCNNGC 1 cut(s) 378
BstDEI CTNAG 2 cut(s) 214, 329
BstF5I GGATG 1 cut(s) 413
BstKTI GATC 2 cut(s) 152, 211
BstMAI GTCTC 1 cut(s) 171
BstMBI GATC 2 cut(s) 149, 208
BstNSI RCATGY 2 cut(s) 376, 380
BstV2I GAAGAC 1 cut(s) 176
BsuRI GGCC 2 cut(s) 10, 303
BtrI CACGTC 2 cut(s) 124, 399
BtsCI GGATG 1 cut(s) 413
Cac8I GCNNGC 1 cut(s) 378
Cfr13I GGNCC 2 cut(s) 8, 302
CseI GACGC 1 cut(s) 150
CviAII CATG 3 cut(s) 206, 373, 377
CviJI RGCY 5 cut(s) 10, 220, 264, 297, 303
CviKI_1 RGCY 5 cut(s) 10, 220, 264, 297, 303
DdeI CTNAG 2 cut(s) 214, 329
DpnI GATC 2 cut(s) 151, 210
DpnII GATC 2 cut(s) 149, 208
Eco57I CTGAAG 2 cut(s) 250, 335
EcoRI GAATTC 1 cut(s) 34
EcoT22I ATGCAT 1 cut(s) 378
Esp3I CGTCTC 1 cut(s) 171
FaeI CATG 3 cut(s) 209, 376, 380
FatI CATG 3 cut(s) 205, 372, 376
FokI GGATG 1 cut(s) 420
FspBI CTAG 1 cut(s) 156
HaeIII GGCC 2 cut(s) 10, 303
HapII CCGG 1 cut(s) 72
HgaI GACGC 1 cut(s) 150
Hin1II CATG 3 cut(s) 209, 376, 380
HinfI GANTC 1 cut(s) 169
HpaII CCGG 1 cut(s) 72
Hpy166II GTNNAC 1 cut(s) 396
Hpy188I TCNGA 2 cut(s) 217, 354
Hpy188III TCNNGA 3 cut(s) 117, 188, 362
Hpy8I GTNNAC 1 cut(s) 396
Hpy99I CGWCG 2 cut(s) 128, 144
HpyAV CCTTC 3 cut(s) 349, 412, 417
HpyCH4III ACNGT 1 cut(s) 182
HpyCH4IV ACGT 2 cut(s) 123, 398
HpyCH4V TGCA 3 cut(s) 110, 376, 380
HpyF3I CTNAG 2 cut(s) 214, 329
HpySE526I ACGT 2 cut(s) 123, 398
Hsp92II CATG 3 cut(s) 209, 376, 380
Kzo9I GATC 2 cut(s) 149, 208
LpnPI CCDG 4 cut(s) 85, 102, 318, 428
LweI GCATC 2 cut(s) 279, 398
MaeI CTAG 1 cut(s) 156
MaeII ACGT 2 cut(s) 123, 398
MaeIII GTNAC 1 cut(s) 53
MalI GATC 2 cut(s) 151, 210
MboI GATC 2 cut(s) 149, 208
MboII GAAGA 1 cut(s) 176
MluCI AATT 5 cut(s) 12, 16, 34, 128, 388
MmeI TCCRAC 1 cut(s) 107
MnlI CCTC 2 cut(s) 223, 287
Mph1103I ATGCAT 1 cut(s) 378
MseI TTAA 3 cut(s) 15, 131, 165
MspI CCGG 1 cut(s) 72
NdeII GATC 2 cut(s) 149, 208
NlaIII CATG 3 cut(s) 209, 376, 380
NlaIV GGNNCC 1 cut(s) 9
NsiI ATGCAT 1 cut(s) 378
NspI RCATGY 2 cut(s) 376, 380
PaeI GCATGC 1 cut(s) 380
PfeI GAWTC 1 cut(s) 169
PshBI ATTAAT 1 cut(s) 15
PsiI TTATAA 2 cut(s) 30, 312
PspN4I GGNNCC 1 cut(s) 9
PspPI GGNCC 2 cut(s) 8, 302
SaqAI TTAA 3 cut(s) 15, 131, 165
Sau3AI GATC 2 cut(s) 149, 208
Sau96I GGNCC 2 cut(s) 8, 302
SetI ASST 6 cut(s) 126, 222, 266, 318, 360, 401
SfaNI GCATC 2 cut(s) 279, 398
SpeI ACTAGT 1 cut(s) 155
SphI GCATGC 1 cut(s) 380
Sse9I AATT 5 cut(s) 12, 16, 34, 128, 388
SspMI CTAG 1 cut(s) 156
TaaI ACNGT 1 cut(s) 182
TaiI ACGT 2 cut(s) 126, 401
TaqI TCGA 2 cut(s) 126, 187
TasI AATT 5 cut(s) 12, 16, 34, 128, 388
TfiI GAWTC 1 cut(s) 169
Tru1I TTAA 3 cut(s) 15, 131, 165
Tru9I TTAA 3 cut(s) 15, 131, 165
TspDTI ATGAA 2 cut(s) 27, 161
VspI ATTAAT 1 cut(s) 15
XapI RAATTY 1 cut(s) 34
XceI RCATGY 2 cut(s) 376, 380
XspI CTAG 1 cut(s) 156
Zsp2I ATGCAT 1 cut(s) 378
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.