Rh4BG114900

Protein GLUTAMINE DUMPER

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0018298
Physical Location & Seq
Reverse (-)
19445079 .. 19446606
1528 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG114900.1

Sequence Viewer

Length: 531 bp
ATGGCAGCAAGAGAGCCTTTTAACGTGACAGTCAGGTCACCGGCCGTGACAACACAGCGGTCACCATGGCATTCACCGGTCCCCTACTTGTTCGGCGGTTTGGCGGCCATGTTGGGTCTCATCGCCTTTGCCCTTCTCATCTTAGCCTGTTCGTACTGGAAGCTTTCCGGCTACCTCGAAAACAGCGAAAACGACGGTGAGCGAGACCTGGAGGCCGGCGAAGGAGGCAAAGGCGACGAAACCCAGAAGGCCCCGCCGGTTTTCGAAGAGAAAATCTTGGTGATCATGGCCGGTGACGCAAAGCCAACTTTCTTGGCCACCCCCATTTCGAGTAGGTCATCGTCTTTCGGTGACAGTTCGAGTACTAATAGCACTACTTGTAGCTGCGATAAGAGTGAGAAGTCGGTGGAAATGGCCGAGCAGACTGAAACGACTGTGAAATTGGAAACTAGTAGTGGCGCTGAAAATGTTCATCATCATGAGAACAACACCGAGGCGACGCATGAGGCCTCAACAGATCAGACCAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

176

Amino Acids

18.89

Weight (kDa)

4.75

Isoelectric Point (pI)

52.87

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0018298)

Species Orthologous Gene IDs
fragaria_vesca FvH4_4g08450
rosa_chinensis RchiOBHm_Chr4g0403911
rosa_laevigata RLG00000008942
rosa_multiflora Rmu_sc0005134.1_g000010
rosa_roxburghii Rroxscaffold_5G00348530
rosa_rugosa Rorug04G0046300
rosa_samantha Rh4BG114900 Rh4CG130200 Rh4DG114900
rosa_wichuraiana Rw4G009910

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 34
AciI CCGC 4 cut(s) 58, 96, 104, 254
AcoI YGGCCR 5 cut(s) 42, 105, 288, 315, 414
AfaI GTAC 2 cut(s) 155, 364
AgeI ACCGGT 1 cut(s) 76
AhlI ACTAGT 1 cut(s) 449
AjnI CCWGG 1 cut(s) 207
AluBI AGCT 2 cut(s) 163, 384
AluI AGCT 2 cut(s) 163, 384
Alw26I GTCTC 2 cut(s) 122, 198
AoxI GGCC 8 cut(s) 42, 105, 213, 249, 288, 315, 414, 507
ApeKI GCWGC 2 cut(s) 5, 384
AsiGI ACCGGT 1 cut(s) 76
Asp700I GAANNNNTTC 1 cut(s) 468
AspLEI GCGC 1 cut(s) 461
AspS9I GGNCC 2 cut(s) 79, 250
AsuHPI GGTGA 7 cut(s) 30, 54, 66, 209, 292, 305, 362
AsuII TTCGAA 1 cut(s) 264
AvaII GGWCC 1 cut(s) 79
BalI TGGCCA 1 cut(s) 317
BbvI GCAGC 2 cut(s) 17, 371
BceAI ACGGC 1 cut(s) 29
BciT130I CCWGG 1 cut(s) 209
BclI TGATCA 1 cut(s) 282
BcoDI GTCTC 2 cut(s) 122, 198
BcuI ACTAGT 1 cut(s) 449
BfaI CTAG 1 cut(s) 450
BfoI RGCGCY 1 cut(s) 462
BisI GCNGC 3 cut(s) 6, 105, 385
BlsI GCNGC 3 cut(s) 7, 106, 386
BmcAI AGTACT 1 cut(s) 364
Bme1390I CCNGG 1 cut(s) 209
Bme18I GGWCC 1 cut(s) 79
BmgT120I GGNCC 2 cut(s) 79, 250
BmiI GGNNCC 2 cut(s) 81, 252
BmrFI CCNGG 1 cut(s) 209
BpmI CTGGAG 1 cut(s) 230
Bpu14I TTCGAA 1 cut(s) 264
BsaI GGTCTC 2 cut(s) 122, 198
BsaJI CCNNGG 2 cut(s) 65, 492
BsaWI WCCGGW 1 cut(s) 76
Bse118I RCCGGY 5 cut(s) 40, 76, 215, 256, 290
Bse1I ACTGG 1 cut(s) 161
BseBI CCWGG 1 cut(s) 209
BseDI CCNNGG 2 cut(s) 65, 492
BseNI ACTGG 1 cut(s) 161
BseX3I CGGCCG 1 cut(s) 42
BseXI GCAGC 2 cut(s) 17, 371
Bsh1285I CGRYCG 1 cut(s) 45
BshFI GGCC 8 cut(s) 44, 107, 215, 251, 290, 317, 416, 509
BshTI ACCGGT 1 cut(s) 76
BsiEI CGRYCG 1 cut(s) 45
BsiSI CCGG 6 cut(s) 41, 77, 168, 216, 257, 291
BslFI GGGAC 1 cut(s) 65
BsmAI GTCTC 2 cut(s) 122, 198
BsmFI GGGAC 1 cut(s) 65
BsmI GAATGC 1 cut(s) 70
BsnI GGCC 8 cut(s) 44, 107, 215, 251, 290, 317, 416, 509
Bso31I GGTCTC 2 cut(s) 122, 198
Bsp119I TTCGAA 1 cut(s) 264
Bsp143I GATC 2 cut(s) 282, 517
Bsp19I CCATGG 1 cut(s) 65
BspACI CCGC 4 cut(s) 58, 96, 104, 254
BspANI GGCC 8 cut(s) 44, 107, 215, 251, 290, 317, 416, 509
BspHI TCATGA 1 cut(s) 478
BspLI GGNNCC 2 cut(s) 81, 252
BspT104I TTCGAA 1 cut(s) 264
BspTNI GGTCTC 2 cut(s) 122, 198
BsrFI RCCGGY 5 cut(s) 40, 76, 215, 256, 290
BsrI ACTGG 1 cut(s) 161
BssAI RCCGGY 5 cut(s) 40, 76, 215, 256, 290
BssECI CCNNGG 2 cut(s) 65, 492
BssMI GATC 2 cut(s) 282, 517
BssT1I CCWWGG 1 cut(s) 65
Bst2UI CCWGG 1 cut(s) 209
Bst4CI ACNGT 4 cut(s) 31, 197, 356, 436
Bst6I CTCTTC 1 cut(s) 261
BstBI TTCGAA 1 cut(s) 264
BstC8I GCNNGC 1 cut(s) 217
BstDEI CTNAG 1 cut(s) 142
BstDSI CCRYGG 1 cut(s) 65
BstEII GGTNACC 2 cut(s) 36, 60
BstH2I RGCGCY 1 cut(s) 462
BstHHI GCGC 1 cut(s) 461
BstKTI GATC 2 cut(s) 285, 520
BstMAI GTCTC 2 cut(s) 122, 198
BstMBI GATC 2 cut(s) 282, 517
BstMCI CGRYCG 1 cut(s) 45
BstMWI GCNNNNNNNGC 2 cut(s) 225, 296
BstNI CCWGG 1 cut(s) 209
BstPI GGTNACC 2 cut(s) 36, 60
BstSCI CCNGG 1 cut(s) 207
BstV1I GCAGC 2 cut(s) 17, 371
BstZI CGGCCG 1 cut(s) 42
BsuRI GGCC 8 cut(s) 44, 107, 215, 251, 290, 317, 416, 509
BtgI CCRYGG 1 cut(s) 65
BtgZI GCGATG 1 cut(s) 106
Cac8I GCNNGC 1 cut(s) 217
CciI TCATGA 1 cut(s) 478
CfoI GCGC 1 cut(s) 461
Cfr10I RCCGGY 5 cut(s) 40, 76, 215, 256, 290
Cfr13I GGNCC 2 cut(s) 79, 250
CseI GACGC 2 cut(s) 305, 508
Csp6I GTAC 2 cut(s) 154, 363
CspAI ACCGGT 1 cut(s) 76
CviAII CATG 5 cut(s) 66, 109, 286, 479, 503
CviQI GTAC 2 cut(s) 154, 363
DdeI CTNAG 1 cut(s) 142
DpnI GATC 2 cut(s) 284, 519
DpnII GATC 2 cut(s) 282, 517
DrdI GACNNNNNNGTC 1 cut(s) 34
DseDI GACNNNNNNGTC 1 cut(s) 34
EaeI YGGCCR 5 cut(s) 42, 105, 288, 315, 414
EagI CGGCCG 1 cut(s) 42
Eam1104I CTCTTC 1 cut(s) 261
EarI CTCTTC 1 cut(s) 261
EclXI CGGCCG 1 cut(s) 42
Eco130I CCWWGG 1 cut(s) 65
Eco147I AGGCCT 1 cut(s) 509
Eco31I GGTCTC 2 cut(s) 122, 198
Eco47I GGWCC 1 cut(s) 79
Eco52I CGGCCG 1 cut(s) 42
Eco91I GGTNACC 2 cut(s) 36, 60
EcoO109I RGGNCCY 1 cut(s) 250
EcoO65I GGTNACC 2 cut(s) 36, 60
EcoRII CCWGG 1 cut(s) 207
EcoT14I CCWWGG 1 cut(s) 65
ErhI CCWWGG 1 cut(s) 65
FaeI CATG 5 cut(s) 69, 112, 289, 482, 506
FaiI YATR 5 cut(s) 67, 110, 287, 480, 504
FalI AAGNNNNNCTT 1 cut(s) 33
FaqI GGGAC 1 cut(s) 65
FatI CATG 5 cut(s) 65, 108, 285, 478, 502
FauI CCCGC 1 cut(s) 261
FbaI TGATCA 1 cut(s) 282
Fnu4HI GCNGC 3 cut(s) 6, 105, 385
Fsp4HI GCNGC 3 cut(s) 6, 105, 385
FspBI CTAG 1 cut(s) 450
GlaI GCGC 1 cut(s) 460
GluI GCNGC 3 cut(s) 6, 105, 385
GsuI CTGGAG 1 cut(s) 230
HaeII RGCGCY 1 cut(s) 462
HaeIII GGCC 8 cut(s) 44, 107, 215, 251, 290, 317, 416, 509
HapII CCGG 6 cut(s) 41, 77, 168, 216, 257, 291
HgaI GACGC 2 cut(s) 305, 508
HhaI GCGC 1 cut(s) 461
Hin1II CATG 5 cut(s) 69, 112, 289, 482, 506
Hin6I GCGC 1 cut(s) 459
HinP1I GCGC 1 cut(s) 459
HindIII AAGCTT 1 cut(s) 161
HpaII CCGG 6 cut(s) 41, 77, 168, 216, 257, 291
HphI GGTGA 7 cut(s) 30, 54, 66, 209, 292, 305, 362
Hpy188I TCNGA 1 cut(s) 522
Hpy188III TCNNGA 1 cut(s) 479
Hpy99I CGWCG 3 cut(s) 197, 239, 502
HpyAV CCTTC 3 cut(s) 143, 215, 241
HpyCH4III ACNGT 4 cut(s) 31, 197, 356, 436
HpyCH4IV ACGT 1 cut(s) 24
HpyF10VI GCNNNNNNNGC 2 cut(s) 225, 296
HpyF3I CTNAG 1 cut(s) 142
HpySE526I ACGT 1 cut(s) 24
Hsp92II CATG 5 cut(s) 69, 112, 289, 482, 506
HspAI GCGC 1 cut(s) 459
KroI GCCGGC 1 cut(s) 215
KroNI GCCGGC 1 cut(s) 217
Ksp22I TGATCA 1 cut(s) 282
Kzo9I GATC 2 cut(s) 282, 517
Lsp1109I GCAGC 2 cut(s) 17, 371
MaeI CTAG 1 cut(s) 450
MaeII ACGT 1 cut(s) 24
MaeIII GTNAC 6 cut(s) 25, 36, 46, 60, 293, 350
MalI GATC 2 cut(s) 284, 519
MboI GATC 2 cut(s) 282, 517
MboII GAAGA 1 cut(s) 278
MlsI TGGCCA 1 cut(s) 317
MluCI AATT 2 cut(s) 440, 526
MluNI TGGCCA 1 cut(s) 317
MnlI CCTC 6 cut(s) 185, 205, 218, 487, 499, 520
Mox20I TGGCCA 1 cut(s) 317
MroNI GCCGGC 1 cut(s) 215
MroXI GAANNNNTTC 1 cut(s) 468
MscI TGGCCA 1 cut(s) 317
MseI TTAA 2 cut(s) 21, 529
MslI CAYNNNNRTG 1 cut(s) 477
Msp20I TGGCCA 1 cut(s) 317
MspA1I CMGCKG 1 cut(s) 58
MspI CCGG 6 cut(s) 41, 77, 168, 216, 257, 291
MspR9I CCNGG 1 cut(s) 209
Mva1269I GAATGC 1 cut(s) 70
MvaI CCWGG 1 cut(s) 209
MwoI GCNNNNNNNGC 2 cut(s) 225, 296
NaeI GCCGGC 1 cut(s) 217
NcoI CCATGG 1 cut(s) 65
NdeII GATC 2 cut(s) 282, 517
NgoMIV GCCGGC 1 cut(s) 215
NlaIII CATG 5 cut(s) 69, 112, 289, 482, 506
NlaIV GGNNCC 2 cut(s) 81, 252
NmeAIII GCCGAG 1 cut(s) 442
NmuCI GTSAC 6 cut(s) 25, 36, 46, 60, 293, 350
NspV TTCGAA 1 cut(s) 264
PagI TCATGA 1 cut(s) 478
PceI AGGCCT 1 cut(s) 509
PcsI WCGNNNNNNNCGW 1 cut(s) 183
PctI GAATGC 1 cut(s) 70
PdiI GCCGGC 1 cut(s) 217
PdmI GAANNNNTTC 1 cut(s) 468
PinAI ACCGGT 1 cut(s) 76
PkrI GCNGC 3 cut(s) 7, 106, 386
Psp6I CCWGG 1 cut(s) 207
PspEI GGTNACC 2 cut(s) 36, 60
PspGI CCWGG 1 cut(s) 207
PspN4I GGNNCC 2 cut(s) 81, 252
PspPI GGNCC 2 cut(s) 79, 250
RsaI GTAC 2 cut(s) 155, 364
RsaNI GTAC 2 cut(s) 154, 363
RseI CAYNNNNRTG 1 cut(s) 477
SaqAI TTAA 2 cut(s) 21, 529
SatI GCNGC 3 cut(s) 6, 105, 385
Sau3AI GATC 2 cut(s) 282, 517
Sau96I GGNCC 2 cut(s) 79, 250
ScaI AGTACT 1 cut(s) 364
ScrFI CCNGG 1 cut(s) 209
SetI ASST 7 cut(s) 27, 38, 165, 177, 210, 338, 386
SfuI TTCGAA 1 cut(s) 264
SinI GGWCC 1 cut(s) 79
SmiMI CAYNNNNRTG 1 cut(s) 477
SpeI ACTAGT 1 cut(s) 449
Sse9I AATT 2 cut(s) 440, 526
SseBI AGGCCT 1 cut(s) 509
SsiI CCGC 4 cut(s) 58, 96, 104, 254
SspMI CTAG 1 cut(s) 450
StuI AGGCCT 1 cut(s) 509
StyD4I CCNGG 1 cut(s) 207
StyI CCWWGG 1 cut(s) 65
TaaI ACNGT 4 cut(s) 31, 197, 356, 436
TaiI ACGT 1 cut(s) 27
TaqI TCGA 4 cut(s) 177, 264, 329, 359
TasI AATT 2 cut(s) 440, 526
TatI WGTACW 1 cut(s) 362
TauI GCSGC 1 cut(s) 107
Tru1I TTAA 2 cut(s) 21, 529
Tru9I TTAA 2 cut(s) 21, 529
TseFI GTSAC 6 cut(s) 25, 36, 46, 60, 293, 350
TseI GCWGC 2 cut(s) 5, 384
Tsp45I GTSAC 6 cut(s) 25, 36, 46, 60, 293, 350
TspDTI ATGAA 1 cut(s) 461
VpaK11BI GGWCC 1 cut(s) 79
XmnI GAANNNNTTC 1 cut(s) 468
XspI CTAG 1 cut(s) 450
ZrmI AGTACT 1 cut(s) 364
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.