Rh4BG213800

receptor-like protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0023260
Physical Location & Seq
Reverse (-)
37157166 .. 37165362
8197 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG213800.1

Sequence Viewer

Length: 642 bp
ATGCATGATCTTGTGCATGATCTTGCAAACGAAGTATCCAAGTTTGAGAGCTTGACACCAGACTTCAATCATGAGAAGGATGATCATGATATACTTATTCGACATGTTGCACGGATTCCTACTCCAACACTAGAAGAAATGTCAAAAATAAGTTGGGTAACAAGGTTAGTAGCCTGTGGTGCATCCCTGGGTTCATTTGTACTCATACTACTTGCTGCTGCAGCTTATTATGTCTATAGTTCAGTTGAAATTTTTTTAGAGGATTACAGAGCTCTCAAACCAAGCAGATACTCTTACGCAGATATCAAGAGGATTACAAATCAGTTCGAGGACAAATTAGGCCAAGGAGCCTATGGAACTGTTTATAAGGGGGAAAGCTTTCTTCTAAATGTTTTGTTGCTGTCAAAGTCCTCAATAGTACAAAGGGGGATGGGGAAAGTGTTAGAAAATTTGAACACTGTGATGGATAATGTAGAGATAAACAACCCCGATAGTGGCAGTATTGATGCTGATATGAGGCTATTACAAAAGTACATGGATTGTGCTCTCAGTATTCTTTGTCAAAAACTTCAAAGTTCTGGGGTTTCAGTTGTAGAGCCTGGAAGCTTGGTGCAGAAGGAGATCTTATTTCTCATAGTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GUB_WAK_bind Pkinase

Protein Analysis

213

Amino Acids

23.79

Weight (kDa)

5.23

Isoelectric Point (pI)

31.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0023260)

Species Orthologous Gene IDs
rosa_rugosa Rorug01G0103300 Rorug01G0110400
rosa_samantha Rh4BG213800 Rh5AG296000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 366
AcsI RAATTY 2 cut(s) 249, 448
AfaI GTAC 3 cut(s) 201, 420, 533
AfiI CCNNNNNNNGG 1 cut(s) 494
AflIII ACRYGT 1 cut(s) 103
AgsI TTSAA 4 cut(s) 67, 248, 454, 572
AjnI CCWGG 2 cut(s) 186, 598
AluBI AGCT 5 cut(s) 51, 224, 272, 378, 606
AluI AGCT 5 cut(s) 51, 224, 272, 378, 606
Alw21I GWGCWC 2 cut(s) 274, 547
AoxI GGCC 1 cut(s) 340
ApeKI GCWGC 3 cut(s) 215, 218, 221
ApoI RAATTY 2 cut(s) 249, 448
Asp700I GAANNNNTTC 1 cut(s) 378
BanII GRGCYC 1 cut(s) 274
Bbv12I GWGCWC 2 cut(s) 274, 547
BbvI GCAGC 3 cut(s) 202, 205, 233
BccI CCATC 2 cut(s) 424, 457
BciT130I CCWGG 2 cut(s) 188, 600
BciVI GTATCC 1 cut(s) 46
BclI TGATCA 1 cut(s) 82
BfaI CTAG 1 cut(s) 131
BfmI CTRYAG 2 cut(s) 219, 235
BfuI GTATCC 1 cut(s) 46
BglII AGATCT 1 cut(s) 621
BisI GCNGC 3 cut(s) 216, 219, 222
BlsI GCNGC 3 cut(s) 217, 220, 223
Bme1390I CCNGG 2 cut(s) 188, 600
BmiI GGNNCC 1 cut(s) 349
BmrFI CCNGG 2 cut(s) 188, 600
BmsI GCATC 2 cut(s) 191, 496
BsaJI CCNNGG 3 cut(s) 186, 187, 343
Bsc4I CCNNNNNNNGG 1 cut(s) 494
BseBI CCWGG 2 cut(s) 188, 600
BseDI CCNNGG 3 cut(s) 186, 187, 343
BseGI GGATG 3 cut(s) 85, 182, 435
BseLI CCNNNNNNNGG 1 cut(s) 494
BseMII CTCAG 1 cut(s) 562
BseXI GCAGC 3 cut(s) 202, 205, 233
BsgI GTGCAG 1 cut(s) 632
BshFI GGCC 1 cut(s) 342
BsiHKAI GWGCWC 2 cut(s) 274, 547
BslI CCNNNNNNNGG 1 cut(s) 494
BsnI GGCC 1 cut(s) 342
Bsp1286I GDGCHC 2 cut(s) 274, 547
Bsp143I GATC 4 cut(s) 7, 19, 82, 621
BspANI GGCC 1 cut(s) 342
BspCNI CTCAG 1 cut(s) 561
BspHI TCATGA 2 cut(s) 70, 85
BspLI GGNNCC 1 cut(s) 349
BspMAI CTGCAG 1 cut(s) 223
BssECI CCNNGG 3 cut(s) 186, 187, 343
BssMI GATC 4 cut(s) 7, 19, 82, 621
BssT1I CCWWGG 1 cut(s) 343
Bst2UI CCWGG 2 cut(s) 188, 600
Bst4CI ACNGT 2 cut(s) 361, 460
BstDEI CTNAG 1 cut(s) 548
BstF5I GGATG 3 cut(s) 85, 182, 435
BstKTI GATC 4 cut(s) 10, 22, 85, 624
BstMBI GATC 4 cut(s) 7, 19, 82, 621
BstMWI GCNNNNNNNGC 2 cut(s) 179, 221
BstNI CCWGG 2 cut(s) 188, 600
BstNSI RCATGY 1 cut(s) 107
BstSCI CCNGG 2 cut(s) 186, 598
BstSFI CTRYAG 2 cut(s) 219, 235
BstV1I GCAGC 3 cut(s) 202, 205, 233
BstX2I RGATCY 1 cut(s) 621
BstYI RGATCY 1 cut(s) 621
BsuI GTATCC 1 cut(s) 46
BsuRI GGCC 1 cut(s) 342
BtsCI GGATG 3 cut(s) 85, 182, 435
BtsIMutI CAGTG 1 cut(s) 456
CciI TCATGA 2 cut(s) 70, 85
Csp6I GTAC 3 cut(s) 200, 419, 532
CviAII CATG 6 cut(s) 5, 17, 71, 86, 104, 535
CviQI GTAC 3 cut(s) 200, 419, 532
DdeI CTNAG 1 cut(s) 548
DpnI GATC 4 cut(s) 9, 21, 84, 623
DpnII GATC 4 cut(s) 7, 19, 82, 621
Ecl136II GAGCTC 1 cut(s) 272
Eco130I CCWWGG 1 cut(s) 343
Eco24I GRGCYC 1 cut(s) 274
Eco32I GATATC 1 cut(s) 304
Eco53kI GAGCTC 1 cut(s) 272
EcoICRI GAGCTC 1 cut(s) 272
EcoRII CCWGG 2 cut(s) 186, 598
EcoRV GATATC 1 cut(s) 304
EcoT14I CCWWGG 1 cut(s) 343
EcoT22I ATGCAT 1 cut(s) 6
EcoT38I GRGCYC 1 cut(s) 274
ErhI CCWWGG 1 cut(s) 343
FaeI CATG 6 cut(s) 8, 20, 74, 89, 107, 538
FalI AAGNNNNNCTT 2 cut(s) 608, 640
FatI CATG 6 cut(s) 4, 16, 70, 85, 103, 534
FbaI TGATCA 1 cut(s) 82
Fnu4HI GCNGC 3 cut(s) 216, 219, 222
FokI GGATG 3 cut(s) 92, 169, 442
FriOI GRGCYC 1 cut(s) 274
Fsp4HI GCNGC 3 cut(s) 216, 219, 222
FspBI CTAG 1 cut(s) 131
GluI GCNGC 3 cut(s) 216, 219, 222
HaeIII GGCC 1 cut(s) 342
Hin1II CATG 6 cut(s) 8, 20, 74, 89, 107, 538
HindIII AAGCTT 2 cut(s) 376, 604
HinfI GANTC 1 cut(s) 115
Hpy188III TCNNGA 3 cut(s) 71, 86, 307
HpyAV CCTTC 2 cut(s) 70, 610
HpyCH4III ACNGT 2 cut(s) 361, 460
HpyCH4V TGCA 7 cut(s) 4, 16, 26, 110, 182, 221, 613
HpyF10VI GCNNNNNNNGC 2 cut(s) 179, 221
HpyF3I CTNAG 1 cut(s) 548
Hsp92II CATG 6 cut(s) 8, 20, 74, 89, 107, 538
Ksp22I TGATCA 1 cut(s) 82
Kzo9I GATC 4 cut(s) 7, 19, 82, 621
LmnI GCTCC 1 cut(s) 347
LpnPI CCDG 7 cut(s) 72, 173, 187, 200, 564, 585, 612
Lsp1109I GCAGC 3 cut(s) 202, 205, 233
LweI GCATC 2 cut(s) 191, 496
MaeI CTAG 1 cut(s) 131
MaeIII GTNAC 1 cut(s) 157
MalI GATC 4 cut(s) 9, 21, 84, 623
MboI GATC 4 cut(s) 7, 19, 82, 621
MboII GAAGA 2 cut(s) 146, 374
MflI RGATCY 1 cut(s) 621
MhlI GDGCHC 2 cut(s) 274, 547
MluCI AATT 3 cut(s) 249, 335, 448
MmeI TCCRAC 1 cut(s) 149
MnlI CCTC 5 cut(s) 253, 303, 322, 421, 510
Mph1103I ATGCAT 1 cut(s) 6
MroXI GAANNNNTTC 1 cut(s) 378
MslI CAYNNNNRTG 1 cut(s) 461
MspR9I CCNGG 2 cut(s) 188, 600
MvaI CCWGG 2 cut(s) 188, 600
MwoI GCNNNNNNNGC 2 cut(s) 179, 221
NdeII GATC 4 cut(s) 7, 19, 82, 621
NlaIII CATG 6 cut(s) 8, 20, 74, 89, 107, 538
NlaIV GGNNCC 1 cut(s) 349
NsiI ATGCAT 1 cut(s) 6
NspI RCATGY 1 cut(s) 107
PagI TCATGA 2 cut(s) 70, 85
PasI CCCWGGG 1 cut(s) 187
PciI ACATGT 1 cut(s) 103
PdmI GAANNNNTTC 1 cut(s) 378
PfeI GAWTC 1 cut(s) 115
PkrI GCNGC 3 cut(s) 217, 220, 223
PscI ACATGT 1 cut(s) 103
PsiI TTATAA 1 cut(s) 366
Psp124BI GAGCTC 1 cut(s) 274
Psp6I CCWGG 2 cut(s) 186, 598
PspGI CCWGG 2 cut(s) 186, 598
PspN4I GGNNCC 1 cut(s) 349
PstI CTGCAG 1 cut(s) 223
PsuI RGATCY 1 cut(s) 621
RsaI GTAC 3 cut(s) 201, 420, 533
RsaNI GTAC 3 cut(s) 200, 419, 532
RseI CAYNNNNRTG 1 cut(s) 461
SacI GAGCTC 1 cut(s) 274
SatI GCNGC 3 cut(s) 216, 219, 222
Sau3AI GATC 4 cut(s) 7, 19, 82, 621
ScrFI CCNGG 2 cut(s) 188, 600
SduI GDGCHC 2 cut(s) 274, 547
SetI ASST 6 cut(s) 53, 167, 226, 274, 380, 608
SfaNI GCATC 2 cut(s) 191, 496
SfcI CTRYAG 2 cut(s) 219, 235
SmiMI CAYNNNNRTG 1 cut(s) 461
Sse9I AATT 3 cut(s) 249, 335, 448
SspMI CTAG 1 cut(s) 131
SstI GAGCTC 1 cut(s) 274
StyD4I CCNGG 2 cut(s) 186, 598
StyI CCWWGG 1 cut(s) 343
TaaI ACNGT 2 cut(s) 361, 460
TaqI TCGA 2 cut(s) 100, 327
TasI AATT 3 cut(s) 249, 335, 448
TatI WGTACW 3 cut(s) 199, 418, 531
TfiI GAWTC 1 cut(s) 115
TscAI CASTG 1 cut(s) 463
TseI GCWGC 3 cut(s) 215, 218, 221
TspDTI ATGAA 1 cut(s) 183
TspGWI ACGGA 1 cut(s) 127
TspRI CASTG 1 cut(s) 463
XapI RAATTY 2 cut(s) 249, 448
XceI RCATGY 1 cut(s) 107
XcmI CCANNNNNNNNNTGG 1 cut(s) 350
XmnI GAANNNNTTC 1 cut(s) 378
XspI CTAG 1 cut(s) 131
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.