Rh5AG296000

receptor-like protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
OG0023260
Physical Location & Seq
Reverse (-)
41239006 .. 41241258
2253 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5AG296000.1

Sequence Viewer

Length: 255 bp
ATGAAATTCTTCTATTTTGTATCAATTTGGCCATGGGAACTATTTGGAAAAGGTTGGGTAACAAAGTTAGTAGCCTGTGGTGCATCCCTGGGTTCATTTGTACTCATACTACTTGCTGCTGCAGCTTATTATGTCTATAGTTCTGTTGAAATTTTTTTAGAGGATTACAGAGCTCTCAAACCAAGCAGATATCAAGAGGATTACAAATCAGTTCAAGGACAAATTAGGCCAAGGAGCCTATGGAACTGTTTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GUB_WAK_bind Pkinase

Protein Analysis

84

Amino Acids

9.79

Weight (kDa)

8.98

Isoelectric Point (pI)

41.01

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0023260)

Species Orthologous Gene IDs
rosa_rugosa Rorug01G0103300 Rorug01G0110400
rosa_samantha Rh4BG213800 Rh5AG296000

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 253
AcoI YGGCCR 1 cut(s) 29
AcsI RAATTY 2 cut(s) 5, 150
AfaI GTAC 1 cut(s) 102
AgsI TTSAA 2 cut(s) 149, 215
AjnI CCWGG 1 cut(s) 87
AluBI AGCT 2 cut(s) 125, 173
AluI AGCT 2 cut(s) 125, 173
Alw21I GWGCWC 1 cut(s) 175
AoxI GGCC 2 cut(s) 29, 227
ApeKI GCWGC 3 cut(s) 116, 119, 122
ApoI RAATTY 2 cut(s) 5, 150
Asp700I GAANNNNTTC 1 cut(s) 8
BalI TGGCCA 1 cut(s) 31
BanII GRGCYC 1 cut(s) 175
Bbv12I GWGCWC 1 cut(s) 175
BbvI GCAGC 3 cut(s) 103, 106, 134
BciT130I CCWGG 1 cut(s) 89
BfmI CTRYAG 2 cut(s) 120, 136
BisI GCNGC 3 cut(s) 117, 120, 123
BlsI GCNGC 3 cut(s) 118, 121, 124
Bme1390I CCNGG 1 cut(s) 89
BmiI GGNNCC 1 cut(s) 236
BmrFI CCNGG 1 cut(s) 89
BmsI GCATC 1 cut(s) 92
BsaJI CCNNGG 4 cut(s) 32, 87, 88, 230
BseBI CCWGG 1 cut(s) 89
BseDI CCNNGG 4 cut(s) 32, 87, 88, 230
BseGI GGATG 1 cut(s) 83
BseXI GCAGC 3 cut(s) 103, 106, 134
BshFI GGCC 2 cut(s) 31, 229
BsiHKAI GWGCWC 1 cut(s) 175
BsnI GGCC 2 cut(s) 31, 229
Bsp1286I GDGCHC 1 cut(s) 175
Bsp19I CCATGG 1 cut(s) 32
BspANI GGCC 2 cut(s) 31, 229
BspLI GGNNCC 1 cut(s) 236
BspMAI CTGCAG 1 cut(s) 124
BssECI CCNNGG 4 cut(s) 32, 87, 88, 230
BssT1I CCWWGG 2 cut(s) 32, 230
Bst2UI CCWGG 1 cut(s) 89
Bst4CI ACNGT 1 cut(s) 248
BstDSI CCRYGG 1 cut(s) 32
BstF5I GGATG 1 cut(s) 83
BstMWI GCNNNNNNNGC 2 cut(s) 80, 122
BstNI CCWGG 1 cut(s) 89
BstSCI CCNGG 1 cut(s) 87
BstSFI CTRYAG 2 cut(s) 120, 136
BstV1I GCAGC 3 cut(s) 103, 106, 134
BsuRI GGCC 2 cut(s) 31, 229
BtgI CCRYGG 1 cut(s) 32
BtsCI GGATG 1 cut(s) 83
Csp6I GTAC 1 cut(s) 101
CviAII CATG 1 cut(s) 33
CviJI RGCY 6 cut(s) 31, 74, 125, 173, 229, 237
CviKI_1 RGCY 6 cut(s) 31, 74, 125, 173, 229, 237
CviQI GTAC 1 cut(s) 101
EaeI YGGCCR 1 cut(s) 29
Ecl136II GAGCTC 1 cut(s) 173
Eco130I CCWWGG 2 cut(s) 32, 230
Eco24I GRGCYC 1 cut(s) 175
Eco32I GATATC 1 cut(s) 191
Eco53kI GAGCTC 1 cut(s) 173
EcoICRI GAGCTC 1 cut(s) 173
EcoRII CCWGG 1 cut(s) 87
EcoRV GATATC 1 cut(s) 191
EcoT14I CCWWGG 2 cut(s) 32, 230
EcoT38I GRGCYC 1 cut(s) 175
ErhI CCWWGG 2 cut(s) 32, 230
FaeI CATG 1 cut(s) 36
FaiI YATR 6 cut(s) 34, 107, 132, 138, 241, 253
FatI CATG 1 cut(s) 32
Fnu4HI GCNGC 3 cut(s) 117, 120, 123
FokI GGATG 1 cut(s) 70
FriOI GRGCYC 1 cut(s) 175
Fsp4HI GCNGC 3 cut(s) 117, 120, 123
GluI GCNGC 3 cut(s) 117, 120, 123
HaeIII GGCC 2 cut(s) 31, 229
Hin1II CATG 1 cut(s) 36
Hpy188III TCNNGA 1 cut(s) 194
HpyCH4III ACNGT 1 cut(s) 248
HpyCH4V TGCA 2 cut(s) 83, 122
HpyF10VI GCNNNNNNNGC 2 cut(s) 80, 122
Hsp92II CATG 1 cut(s) 36
LmnI GCTCC 1 cut(s) 234
LpnPI CCDG 3 cut(s) 74, 88, 101
Lsp1109I GCAGC 3 cut(s) 103, 106, 134
LweI GCATC 1 cut(s) 92
MaeIII GTNAC 1 cut(s) 58
MhlI GDGCHC 1 cut(s) 175
MlsI TGGCCA 1 cut(s) 31
MluCI AATT 4 cut(s) 5, 24, 150, 222
MluNI TGGCCA 1 cut(s) 31
MnlI CCTC 2 cut(s) 154, 190
Mox20I TGGCCA 1 cut(s) 31
MroXI GAANNNNTTC 1 cut(s) 8
MscI TGGCCA 1 cut(s) 31
Msp20I TGGCCA 1 cut(s) 31
MspR9I CCNGG 1 cut(s) 89
MvaI CCWGG 1 cut(s) 89
MwoI GCNNNNNNNGC 2 cut(s) 80, 122
NcoI CCATGG 1 cut(s) 32
NlaIII CATG 1 cut(s) 36
NlaIV GGNNCC 1 cut(s) 236
PasI CCCWGGG 1 cut(s) 88
PdmI GAANNNNTTC 1 cut(s) 8
PkrI GCNGC 3 cut(s) 118, 121, 124
PsiI TTATAA 1 cut(s) 253
Psp124BI GAGCTC 1 cut(s) 175
Psp6I CCWGG 1 cut(s) 87
PspGI CCWGG 1 cut(s) 87
PspN4I GGNNCC 1 cut(s) 236
PstI CTGCAG 1 cut(s) 124
RsaI GTAC 1 cut(s) 102
RsaNI GTAC 1 cut(s) 101
SacI GAGCTC 1 cut(s) 175
SatI GCNGC 3 cut(s) 117, 120, 123
ScrFI CCNGG 1 cut(s) 89
SduI GDGCHC 1 cut(s) 175
SetI ASST 3 cut(s) 55, 127, 175
SfaNI GCATC 1 cut(s) 92
SfcI CTRYAG 2 cut(s) 120, 136
SgeI CNNG 9 cut(s) 45, 87, 100, 101, 125, 195, 206, 227, 243
Sse9I AATT 4 cut(s) 5, 24, 150, 222
SstI GAGCTC 1 cut(s) 175
StyD4I CCNGG 1 cut(s) 87
StyI CCWWGG 2 cut(s) 32, 230
TaaI ACNGT 1 cut(s) 248
TasI AATT 4 cut(s) 5, 24, 150, 222
TatI WGTACW 1 cut(s) 100
TseI GCWGC 3 cut(s) 116, 119, 122
TspDTI ATGAA 2 cut(s) 17, 84
XapI RAATTY 2 cut(s) 5, 150
XcmI CCANNNNNNNNNTGG 1 cut(s) 237
XmnI GAANNNNTTC 1 cut(s) 8
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.