Rh4BG342500

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4B
OG0023526
Physical Location & Seq
Forward (+)
50578577 .. 50578882
306 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4BG342500.1

Sequence Viewer

Length: 306 bp
ATGGGCTGGACACGCGTGTCAGAGTACGGAGGATCTCCTGTATCACGGTTTATGGTAAAACTAATAAACTCACGCTTTAGTCATGATGCCCGCGCCCTGACCTCCACGTGGCGCCATCTCGTCCCATCAATCTCATTACCCCACAACAAAGTCATTAATATTAACGGCCAGATGGATGTGACGGTAACGTATCCCACTCACGTACGTGAAAACGACATAGATTCCGCTCGTTACAACTACTCACTGGCCCTGAAACGTCAAGGGCATCACTGTCATTTCAGGTCAAATCACCCCCTCTCACAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

101

Amino Acids

11.63

Weight (kDa)

10.11

Isoelectric Point (pI)

46.89

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0023526)

Species Orthologous Gene IDs
rosa_samantha Rh4BG342500 Rh4CG356900 Rh4DG336200
rosa_wichuraiana Rw4G028980

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 16
AccB1I GGYRCC 1 cut(s) 111
AccBSI CCGCTC 1 cut(s) 227
AccII CGCG 2 cut(s) 15, 93
AciI CCGC 2 cut(s) 91, 225
AclWI GGATC 1 cut(s) 40
AcoI YGGCCR 1 cut(s) 166
AcvI CACGTG 1 cut(s) 108
AcyI GRCGYC 1 cut(s) 112
AfaI GTAC 2 cut(s) 26, 204
AfiI CCNNNNNNNGG 1 cut(s) 108
AflIII ACRYGT 1 cut(s) 13
AleI CACNNNNGTG 1 cut(s) 204
AlwI GGATC 1 cut(s) 40
AoxI GGCC 2 cut(s) 166, 246
AseI ATTAAT 1 cut(s) 156
AspLEI GCGC 2 cut(s) 95, 114
AspS9I GGNCC 1 cut(s) 247
AsuHPI GGTGA 1 cut(s) 281
BanI GGYRCC 1 cut(s) 111
BbrPI CACGTG 1 cut(s) 108
BccI CCATC 3 cut(s) 123, 133, 166
BceAI ACGGC 1 cut(s) 181
BciVI GTATCC 1 cut(s) 201
BfoI RGCGCY 1 cut(s) 115
BfuI GTATCC 1 cut(s) 201
BmgT120I GGNCC 1 cut(s) 247
BmiI GGNNCC 1 cut(s) 113
BmsI GCATC 2 cut(s) 76, 274
BsaAI YACGTR 3 cut(s) 108, 202, 206
BsaHI GRCGYC 1 cut(s) 112
Bsc4I CCNNNNNNNGG 1 cut(s) 108
Bse1I ACTGG 1 cut(s) 249
BseGI GGATG 1 cut(s) 181
BseLI CCNNNNNNNGG 1 cut(s) 108
BseNI ACTGG 1 cut(s) 249
Bsh1236I CGCG 2 cut(s) 15, 93
BshFI GGCC 2 cut(s) 168, 248
BshNI GGYRCC 1 cut(s) 111
BsiWI CGTACG 1 cut(s) 202
BslFI GGGAC 1 cut(s) 107
BslI CCNNNNNNNGG 1 cut(s) 108
BsmFI GGGAC 1 cut(s) 107
BsnI GGCC 2 cut(s) 168, 248
Bsp143I GATC 1 cut(s) 32
BspACI CCGC 2 cut(s) 91, 225
BspANI GGCC 2 cut(s) 168, 248
BspFNI CGCG 2 cut(s) 15, 93
BspHI TCATGA 1 cut(s) 82
BspLI GGNNCC 1 cut(s) 113
BspPI GGATC 1 cut(s) 40
BspT107I GGYRCC 1 cut(s) 111
BsrBI CCGCTC 1 cut(s) 227
BsrI ACTGG 1 cut(s) 249
BssMI GATC 1 cut(s) 32
BssNI GRCGYC 1 cut(s) 112
Bst4CI ACNGT 4 cut(s) 48, 184, 272, 303
BstACI GRCGYC 1 cut(s) 112
BstBAI YACGTR 3 cut(s) 108, 202, 206
BstC8I GCNNGC 1 cut(s) 91
BstF5I GGATG 1 cut(s) 181
BstFNI CGCG 2 cut(s) 15, 93
BstH2I RGCGCY 1 cut(s) 115
BstHHI GCGC 2 cut(s) 95, 114
BstKTI GATC 1 cut(s) 35
BstMBI GATC 1 cut(s) 32
BstMWI GCNNNNNNNGC 1 cut(s) 12
BstUI CGCG 2 cut(s) 15, 93
BstX2I RGATCY 1 cut(s) 32
BstYI RGATCY 1 cut(s) 32
BsuI GTATCC 1 cut(s) 201
BsuRI GGCC 2 cut(s) 168, 248
BtsCI GGATG 1 cut(s) 181
BtsIMutI CAGTG 2 cut(s) 242, 268
Cac8I GCNNGC 1 cut(s) 91
CciI TCATGA 1 cut(s) 82
CfoI GCGC 2 cut(s) 95, 114
Cfr13I GGNCC 1 cut(s) 247
Csp6I GTAC 2 cut(s) 25, 203
CviAII CATG 1 cut(s) 83
CviJI RGCY 3 cut(s) 6, 168, 248
CviKI_1 RGCY 3 cut(s) 6, 168, 248
CviQI GTAC 2 cut(s) 25, 203
DinI GGCGCC 1 cut(s) 113
DpnI GATC 1 cut(s) 34
DpnII GATC 1 cut(s) 32
DrdI GACNNNNNNGTC 1 cut(s) 16
DseDI GACNNNNNNGTC 1 cut(s) 16
EaeI YGGCCR 1 cut(s) 166
Eco72I CACGTG 1 cut(s) 108
EgeI GGCGCC 1 cut(s) 113
EheI GGCGCC 1 cut(s) 113
FaeI CATG 1 cut(s) 86
FaiI YATR 3 cut(s) 53, 84, 218
FaqI GGGAC 1 cut(s) 107
FatI CATG 1 cut(s) 82
FauI CCCGC 1 cut(s) 98
FokI GGATG 1 cut(s) 188
GlaI GCGC 2 cut(s) 94, 113
HaeII RGCGCY 1 cut(s) 115
HaeIII GGCC 2 cut(s) 168, 248
HhaI GCGC 2 cut(s) 95, 114
Hin1I GRCGYC 1 cut(s) 112
Hin1II CATG 1 cut(s) 86
Hin6I GCGC 2 cut(s) 93, 112
HinP1I GCGC 2 cut(s) 93, 112
HinfI GANTC 1 cut(s) 221
HphI GGTGA 1 cut(s) 281
Hpy188I TCNGA 1 cut(s) 22
Hpy188III TCNNGA 1 cut(s) 83
HpyCH4III ACNGT 4 cut(s) 48, 184, 272, 303
HpyCH4IV ACGT 5 cut(s) 107, 188, 201, 205, 256
HpyF10VI GCNNNNNNNGC 1 cut(s) 12
HpySE526I ACGT 5 cut(s) 107, 188, 201, 205, 256
Hsp92I GRCGYC 1 cut(s) 112
Hsp92II CATG 1 cut(s) 86
HspAI GCGC 2 cut(s) 93, 112
KasI GGCGCC 1 cut(s) 111
Kzo9I GATC 1 cut(s) 32
LpnPI CCDG 6 cut(s) 51, 110, 182, 230, 263, 265
LweI GCATC 2 cut(s) 76, 274
MaeII ACGT 5 cut(s) 107, 188, 201, 205, 256
MaeIII GTNAC 3 cut(s) 178, 184, 230
MalI GATC 1 cut(s) 34
MbiI CCGCTC 1 cut(s) 227
MboI GATC 1 cut(s) 32
MflI RGATCY 1 cut(s) 32
MluI ACGCGT 1 cut(s) 13
Mly113I GGCGCC 1 cut(s) 112
MnlI CCTC 3 cut(s) 23, 112, 305
MseI TTAA 2 cut(s) 156, 162
MslI CAYNNNNRTG 1 cut(s) 204
MvnI CGCG 2 cut(s) 15, 93
MwoI GCNNNNNNNGC 1 cut(s) 12
NarI GGCGCC 1 cut(s) 112
NdeII GATC 1 cut(s) 32
NlaIII CATG 1 cut(s) 86
NlaIV GGNNCC 1 cut(s) 113
NmuCI GTSAC 1 cut(s) 178
OliI CACNNNNGTG 1 cut(s) 204
PagI TCATGA 1 cut(s) 82
PfeI GAWTC 1 cut(s) 221
Pfl23II CGTACG 1 cut(s) 202
PluTI GGCGCC 1 cut(s) 115
PmaCI CACGTG 1 cut(s) 108
PmlI CACGTG 1 cut(s) 108
Ppu21I YACGTR 3 cut(s) 108, 202, 206
PshBI ATTAAT 1 cut(s) 156
PspCI CACGTG 1 cut(s) 108
PspLI CGTACG 1 cut(s) 202
PspN4I GGNNCC 1 cut(s) 113
PspPI GGNCC 1 cut(s) 247
PsuI RGATCY 1 cut(s) 32
RsaI GTAC 2 cut(s) 26, 204
RsaNI GTAC 2 cut(s) 25, 203
RseI CAYNNNNRTG 1 cut(s) 204
SaqAI TTAA 2 cut(s) 156, 162
Sau3AI GATC 1 cut(s) 32
Sau96I GGNCC 1 cut(s) 247
SetI ASST 7 cut(s) 104, 110, 191, 204, 208, 259, 284
SfaNI GCATC 2 cut(s) 76, 274
SfoI GGCGCC 1 cut(s) 113
SmiMI CAYNNNNRTG 1 cut(s) 204
SsiI CCGC 2 cut(s) 91, 225
SspDI GGCGCC 1 cut(s) 111
SspI AATATT 1 cut(s) 160
TaaI ACNGT 4 cut(s) 48, 184, 272, 303
TaiI ACGT 5 cut(s) 110, 191, 204, 208, 259
TfiI GAWTC 1 cut(s) 221
Tru1I TTAA 2 cut(s) 156, 162
Tru9I TTAA 2 cut(s) 156, 162
TscAI CASTG 2 cut(s) 249, 275
TseFI GTSAC 1 cut(s) 178
Tsp45I GTSAC 1 cut(s) 178
TspGWI ACGGA 1 cut(s) 42
TspRI CASTG 2 cut(s) 249, 275
VspI ATTAAT 1 cut(s) 156
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.