Rh4DG336200

receptor-like protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0023526
Physical Location & Seq
Forward (+)
55971157 .. 55973341
2185 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG336200.1

Sequence Viewer

Length: 396 bp
ATGAATGAGGAAGACAAAGGCAGAGCAAGGAAGATGATAATCGTGAGCTTATGGTGCATACAAACTGATCCCTCAAGCCGGCCAGCGATGAAACAAGTCATAGAAATGTTGGAAGGAAGTATTGGATCTTTGCAGATACCACCAAAGCCTTACTTGTATTCTCCTCCAAAATTCCTAGCAGAACCAGCACATCCTTCTTCTACTTTGAAACATGTGATGGGCAGGACACGCGTGTCAGAGTACGGAGGATCTCCTGTATCACGGTTTATGGTAAAACTAATAAACTCACGCTTCAGTCATGATGCCCGCGCCCCGACCTCCACGTGGCGCCATCTCGTCCCATCAATCTCATTACCCACAACCAAGTCATTAATATCAACGGCCAGATGGATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
GUB_WAK_bind Pkinase Pkinase_Tyr WAK_assoc

Protein Analysis

131

Amino Acids

14.72

Weight (kDa)

10.22

Isoelectric Point (pI)

61.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0023526)

Species Orthologous Gene IDs
rosa_samantha Rh4BG342500 Rh4CG356900 Rh4DG336200
rosa_wichuraiana Rw4G028980

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 232
AccB1I GGYRCC 1 cut(s) 327
AccII CGCG 2 cut(s) 231, 309
AciI CCGC 1 cut(s) 307
AclWI GGATC 3 cut(s) 62, 133, 256
AcoI YGGCCR 2 cut(s) 80, 381
AcsI RAATTY 1 cut(s) 170
AcuI CTGAAG 1 cut(s) 277
AcvI CACGTG 1 cut(s) 324
AcyI GRCGYC 1 cut(s) 328
AfaI GTAC 1 cut(s) 242
AfiI CCNNNNNNNGG 2 cut(s) 78, 324
AflIII ACRYGT 2 cut(s) 211, 229
AgsI TTSAA 1 cut(s) 208
AjuI GAANNNNNNNTTGG 2 cut(s) 105, 137
AluBI AGCT 1 cut(s) 48
AluI AGCT 1 cut(s) 48
AlwI GGATC 3 cut(s) 62, 133, 256
AoxI GGCC 2 cut(s) 80, 381
ApoI RAATTY 1 cut(s) 170
AseI ATTAAT 1 cut(s) 371
AspLEI GCGC 2 cut(s) 311, 330
BanI GGYRCC 1 cut(s) 327
BbrPI CACGTG 1 cut(s) 324
BbsI GAAGAC 1 cut(s) 18
BccI CCATC 4 cut(s) 211, 339, 349, 381
BfaI CTAG 1 cut(s) 176
BfoI RGCGCY 1 cut(s) 331
BmiI GGNNCC 1 cut(s) 329
BmsI GCATC 1 cut(s) 292
BpiI GAAGAC 1 cut(s) 18
BpuEI CTTGAG 1 cut(s) 58
BsaAI YACGTR 1 cut(s) 324
BsaBI GATNNNNATC 1 cut(s) 38
BsaHI GRCGYC 1 cut(s) 328
Bsc4I CCNNNNNNNGG 2 cut(s) 78, 324
Bse118I RCCGGY 1 cut(s) 78
Bse8I GATNNNNATC 1 cut(s) 38
BseGI GGATG 2 cut(s) 190, 396
BseJI GATNNNNATC 1 cut(s) 38
BseLI CCNNNNNNNGG 2 cut(s) 78, 324
BseRI GAGGAG 1 cut(s) 153
Bsh1236I CGCG 2 cut(s) 231, 309
BshFI GGCC 2 cut(s) 82, 383
BshNI GGYRCC 1 cut(s) 327
BsiSI CCGG 1 cut(s) 79
BslFI GGGAC 1 cut(s) 323
BslI CCNNNNNNNGG 2 cut(s) 78, 324
BsmFI GGGAC 1 cut(s) 323
BsnI GGCC 2 cut(s) 82, 383
Bsp143I GATC 3 cut(s) 67, 125, 248
BspACI CCGC 1 cut(s) 307
BspANI GGCC 2 cut(s) 82, 383
BspFNI CGCG 2 cut(s) 231, 309
BspHI TCATGA 1 cut(s) 298
BspLI GGNNCC 1 cut(s) 329
BspPI GGATC 3 cut(s) 62, 133, 256
BspT107I GGYRCC 1 cut(s) 327
BsrFI RCCGGY 1 cut(s) 78
BssAI RCCGGY 1 cut(s) 78
BssMI GATC 3 cut(s) 67, 125, 248
BssNI GRCGYC 1 cut(s) 328
Bst4CI ACNGT 1 cut(s) 264
BstACI GRCGYC 1 cut(s) 328
BstBAI YACGTR 1 cut(s) 324
BstC8I GCNNGC 3 cut(s) 80, 84, 307
BstF5I GGATG 2 cut(s) 190, 396
BstFNI CGCG 2 cut(s) 231, 309
BstH2I RGCGCY 1 cut(s) 331
BstHHI GCGC 2 cut(s) 311, 330
BstKTI GATC 3 cut(s) 70, 128, 251
BstMBI GATC 3 cut(s) 67, 125, 248
BstMWI GCNNNNNNNGC 3 cut(s) 54, 185, 228
BstNSI RCATGY 1 cut(s) 215
BstUI CGCG 2 cut(s) 231, 309
BstV2I GAAGAC 1 cut(s) 18
BstX2I RGATCY 2 cut(s) 125, 248
BstYI RGATCY 2 cut(s) 125, 248
BsuRI GGCC 2 cut(s) 82, 383
BtgZI GCGATG 1 cut(s) 101
BtsCI GGATG 2 cut(s) 190, 396
Cac8I GCNNGC 3 cut(s) 80, 84, 307
CciI TCATGA 1 cut(s) 298
CfoI GCGC 2 cut(s) 311, 330
Cfr10I RCCGGY 1 cut(s) 78
Csp6I GTAC 1 cut(s) 241
CviAII CATG 2 cut(s) 212, 299
CviJI RGCY 5 cut(s) 48, 78, 82, 148, 383
CviKI_1 RGCY 5 cut(s) 48, 78, 82, 148, 383
CviQI GTAC 1 cut(s) 241
DinI GGCGCC 1 cut(s) 329
DpnI GATC 3 cut(s) 69, 127, 250
DpnII GATC 3 cut(s) 67, 125, 248
DrdI GACNNNNNNGTC 1 cut(s) 232
DseDI GACNNNNNNGTC 1 cut(s) 232
EaeI YGGCCR 2 cut(s) 80, 381
Eco57I CTGAAG 1 cut(s) 277
Eco72I CACGTG 1 cut(s) 324
EgeI GGCGCC 1 cut(s) 329
EheI GGCGCC 1 cut(s) 329
FaeI CATG 2 cut(s) 215, 302
FaiI YATR 6 cut(s) 52, 59, 101, 213, 269, 300
FalI AAGNNNNNCTT 2 cut(s) 137, 169
FaqI GGGAC 1 cut(s) 323
FatI CATG 2 cut(s) 211, 298
FauI CCCGC 1 cut(s) 314
FokI GGATG 1 cut(s) 177
FspBI CTAG 1 cut(s) 176
GlaI GCGC 2 cut(s) 310, 329
HaeII RGCGCY 1 cut(s) 331
HaeIII GGCC 2 cut(s) 82, 383
HapII CCGG 1 cut(s) 79
HhaI GCGC 2 cut(s) 311, 330
Hin1I GRCGYC 1 cut(s) 328
Hin1II CATG 2 cut(s) 215, 302
Hin6I GCGC 2 cut(s) 309, 328
HinP1I GCGC 2 cut(s) 309, 328
HpaII CCGG 1 cut(s) 79
Hpy188I TCNGA 1 cut(s) 238
Hpy188III TCNNGA 2 cut(s) 43, 299
HpyAV CCTTC 2 cut(s) 107, 204
HpyCH4III ACNGT 1 cut(s) 264
HpyCH4IV ACGT 1 cut(s) 323
HpyCH4V TGCA 2 cut(s) 57, 133
HpyF10VI GCNNNNNNNGC 3 cut(s) 54, 185, 228
HpySE526I ACGT 1 cut(s) 323
Hsp92I GRCGYC 1 cut(s) 328
Hsp92II CATG 2 cut(s) 215, 302
HspAI GCGC 2 cut(s) 309, 328
KasI GGCGCC 1 cut(s) 327
KroI GCCGGC 1 cut(s) 78
KroNI GCCGGC 1 cut(s) 80
Kzo9I GATC 3 cut(s) 67, 125, 248
LpnPI CCDG 5 cut(s) 92, 96, 198, 208, 267
LweI GCATC 1 cut(s) 292
MaeI CTAG 1 cut(s) 176
MaeII ACGT 1 cut(s) 323
MalI GATC 3 cut(s) 69, 127, 250
MboI GATC 3 cut(s) 67, 125, 248
MboII GAAGA 3 cut(s) 23, 43, 189
MflI RGATCY 2 cut(s) 125, 248
MluCI AATT 1 cut(s) 170
MluI ACGCGT 1 cut(s) 229
Mly113I GGCGCC 1 cut(s) 328
MmeI TCCRAC 1 cut(s) 90
MnlI CCTC 4 cut(s) 82, 174, 239, 328
MroNI GCCGGC 1 cut(s) 78
MseI TTAA 1 cut(s) 371
MslI CAYNNNNRTG 1 cut(s) 104
MspI CCGG 1 cut(s) 79
MvnI CGCG 2 cut(s) 231, 309
MwoI GCNNNNNNNGC 3 cut(s) 54, 185, 228
NaeI GCCGGC 1 cut(s) 80
NarI GGCGCC 1 cut(s) 328
NdeII GATC 3 cut(s) 67, 125, 248
NgoMIV GCCGGC 1 cut(s) 78
NlaIII CATG 2 cut(s) 215, 302
NlaIV GGNNCC 1 cut(s) 329
NspI RCATGY 1 cut(s) 215
PagI TCATGA 1 cut(s) 298
PciI ACATGT 1 cut(s) 211
PdiI GCCGGC 1 cut(s) 80
PluTI GGCGCC 1 cut(s) 331
PmaCI CACGTG 1 cut(s) 324
PmlI CACGTG 1 cut(s) 324
Ppu21I YACGTR 1 cut(s) 324
PscI ACATGT 1 cut(s) 211
PshBI ATTAAT 1 cut(s) 371
PspCI CACGTG 1 cut(s) 324
PspN4I GGNNCC 1 cut(s) 329
PsuI RGATCY 2 cut(s) 125, 248
RsaI GTAC 1 cut(s) 242
RsaNI GTAC 1 cut(s) 241
RseI CAYNNNNRTG 1 cut(s) 104
SaqAI TTAA 1 cut(s) 371
Sau3AI GATC 3 cut(s) 67, 125, 248
SetI ASST 3 cut(s) 50, 320, 326
SfaNI GCATC 1 cut(s) 292
SfoI GGCGCC 1 cut(s) 329
SmiMI CAYNNNNRTG 1 cut(s) 104
SmlI CTYRAG 1 cut(s) 73
SmoI CTYRAG 1 cut(s) 73
Sse9I AATT 1 cut(s) 170
SsiI CCGC 1 cut(s) 307
SspDI GGCGCC 1 cut(s) 327
SspMI CTAG 1 cut(s) 176
TaaI ACNGT 1 cut(s) 264
TaiI ACGT 1 cut(s) 326
TasI AATT 1 cut(s) 170
Tru1I TTAA 1 cut(s) 371
Tru9I TTAA 1 cut(s) 371
TspDTI ATGAA 2 cut(s) 17, 104
TspGWI ACGGA 1 cut(s) 258
VspI ATTAAT 1 cut(s) 371
XapI RAATTY 1 cut(s) 170
XceI RCATGY 1 cut(s) 215
XspI CTAG 1 cut(s) 176
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.