Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0023526

Physical Location & Seq

Genomic Coordinates Forward (+)

55694516 .. 55696010

Gene Structure 1495 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G028980.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1047 bp

ATGGATGTGACGGTAACGTCTCCCACTCATGTACGTGAAAACGACATAGATTCCGAGCGTTACAACTACTCACTGGACACTGGCACTGAAACGTCAAGGGCATCACTGTCATTTCAGCGGCTCGTTCGCGGCGCTGACTGGGTTGACTCAGCTCCGAGTTCTCAGCCTGAAGCGGAACCGCCTCTCCGGCCCCATTCCCGACAACGCTTCTCCGACTTTCCCGCTTCCGTAACGTCCCTTTTACGGCTTTACCGCCTCGATCTCGCTTACAACAACTTGTCCGGTGAAATTCCCGAGACCGTCAACCATTTGACTCATCTCCTCACTCTCCGCCTCGACGCGAACCGGTTCTCCGGCTCGATTTCCGGCCTCAACATACCTAACCTCCAGGAGTTCAACGTCTCGGCGAACCGTTTGTCCGGCGAAATTCCCAAGTCGTTGTCTATTTTCTCCGAATCTGCATTTGCGCAAAACCCGGGTCTAAACCGACCCGACTCGACCCGGAGGAGCTATTGCGTCTCCAGTAATACCTGCAAGAAACCCAACCGTAGTGGCGTCCTCGCCGACTTCATTGCCATCAAGCTCTACGTCCACCAAATCGGAAAAGTCGACGTCCCACCACAACGGAGGTTCCAAAATGAGTCCGGCGACTCTGATCGCCATAATAGTCGGCGACGTGTTGGTCCTCTTTTTGGTCTCGCTGCTGCTCTACTGCTACTTCTGGCGGAACTTCGCGGCCAAAATGCGGCAGGGCAAGAGCAGCTCGAAGCTTCTGGAGACAGAGAAGATAGTCTACTCGTCGAGCCCATACTCGGCCCAGCCCACTTTCGAGAGGGGACAGATGGTGTTTTTCGAAGGCGTGAAGCGTTTCGAGCTGGAGGACTTGCTGAGAGCCTCGGCGGAGATGTTGGGGAAAGGCGGGTTCGGGACGGCGTACAAGGCGGTTTTGGACGACGGCAATGTTGTGGCGGTGAAGAGGCTCAAGGATGCTCAAATTGGTGGGAAGAATCAGTTCGAGCAGCACATGGCGGTGCTGGGCAAGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04010 ko04064 ko04620 ko04621 ko04624 ko04722 ko05133 ko05140 ko05142 ko05145 ko05152 ko05162 ko05164 map04010 map04064 map04620 map04621 map04624 map04722 map05133 map05140 map05142 map05145 map05152 map05162 map05164

Pfam Domains

Protein Families

LRRNT_2 LRR_1 Pkinase Pkinase_Tyr

Protein Analysis

348

Amino Acids

38.14

Weight (kDa)

6.47

Isoelectric Point (pI)

48.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0023526)

Species	Orthologous Gene IDs
rosa_samantha	Rh4BG342500 Rh4CG356900 Rh4DG336200
rosa_wichuraiana	Rw4G028980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	16, 681
AatII	GACGTC	1 cut(s)	615
Acc16I	TGCGCA	1 cut(s)	468
Acc36I	ACCTGC	1 cut(s)	539
AccI	GTMKAC	2 cut(s)	609, 793
AccII	CGCG	3 cut(s)	129, 341, 735
AcoI	YGGCCR	1 cut(s)	736
AcsI	RAATTY	2 cut(s)	288, 426
AcuI	CTGAAG	1 cut(s)	189
AcyI	GRCGYC	2 cut(s)	555, 612
AfaI	GTAC	2 cut(s)	33, 936
AfiI	CCNNNNNNNGG	4 cut(s)	243, 692, 745, 812
AflIII	ACRYGT	1 cut(s)	676
AgeI	ACCGGT	1 cut(s)	345
AgsI	TTSAA	1 cut(s)	397
AjiI	CACGTC	1 cut(s)	677
AjnI	CCWGG	1 cut(s)	387
AloI	GAACNNNNNNTCC	6 cut(s)	168, 200, 335, 367, 401, 433
AluBI	AGCT	7 cut(s)	152, 510, 583, 763, 770, 875, 1043
AluI	AGCT	7 cut(s)	152, 510, 583, 763, 770, 875, 1043
Alw26I	GTCTC	6 cut(s)	24, 290, 406, 523, 701, 771
Ama87I	CYCGRG	2 cut(s)	293, 475
AoxI	GGCC	4 cut(s)	188, 367, 736, 814
ApeKI	GCWGC	4 cut(s)	701, 704, 760, 1019
ApoI	RAATTY	2 cut(s)	288, 426
ArsI	GACNNNNNNTTYG	4 cut(s)	401, 433, 463, 495
AsiGI	ACCGGT	1 cut(s)	345
Asp700I	GAANNNNTTC	3 cut(s)	347, 867, 1011
AspLEI	GCGC	2 cut(s)	134, 469
AspS9I	GGNCC	3 cut(s)	189, 683, 815
AsuC2I	CCSGG	3 cut(s)	476, 477, 502
AsuHPI	GGTGA	2 cut(s)	296, 983
AsuII	TTCGAA	1 cut(s)	853
AvaI	CYCGRG	2 cut(s)	293, 475
AvaII	GGWCC	1 cut(s)	683
BanII	GRGCYC	1 cut(s)	807
BarI	GAAGNNNNNNTAC	2 cut(s)	777, 809
BbvI	GCAGC	4 cut(s)	688, 691, 772, 1031
BccI	CCATC	2 cut(s)	584, 836
BceAI	ACGGC	3 cut(s)	260, 946, 971
BcgI	CGANNNNNNTGC	2 cut(s)	554, 588
BciT130I	CCWGG	1 cut(s)	389
BcnI	CCSGG	3 cut(s)	476, 477, 502
BcoDI	GTCTC	6 cut(s)	24, 290, 406, 523, 701, 771
BfoI	RGCGCY	1 cut(s)	135
BfuAI	ACCTGC	1 cut(s)	539
BglI	GCCNNNNNGGC	1 cut(s)	187
BisI	GCNGC	8 cut(s)	119, 130, 702, 705, 736, 747, 761, 1020
BlsI	GCNGC	8 cut(s)	120, 131, 703, 706, 737, 748, 762, 1021
Bme1390I	CCNGG	4 cut(s)	389, 476, 477, 502
Bme18I	GGWCC	1 cut(s)	683
BmeT110I	CYCGRG	2 cut(s)	293, 475
BmgBI	CACGTC	1 cut(s)	677
BmgT120I	GGNCC	3 cut(s)	189, 683, 815
BmiI	GGNNCC	3 cut(s)	177, 191, 632
BmrFI	CCNGG	4 cut(s)	389, 476, 477, 502
BmrI	ACTGGG	1 cut(s)	148
BmsI	GCATC	2 cut(s)	110, 977
BmuI	ACTGGG	1 cut(s)	148
BpmI	CTGGAG	4 cut(s)	371, 505, 795, 897
Bpu14I	TTCGAA	1 cut(s)	853
BpuEI	CTTGAG	1 cut(s)	966
BpuMI	CCSGG	3 cut(s)	476, 477, 502
BsaAI	YACGTR	1 cut(s)	35
BsaHI	GRCGYC	2 cut(s)	555, 612
BsaI	GGTCTC	2 cut(s)	290, 701
BsaJI	CCNNGG	2 cut(s)	475, 895
BsaWI	WCCGGW	2 cut(s)	281, 345
BsaXI	ACNNNNNCTCC	6 cut(s)	168, 198, 335, 365, 369, 399
Bsc4I	CCNNNNNNNGG	4 cut(s)	243, 692, 745, 812
Bse118I	RCCGGY	1 cut(s)	345
Bse1I	ACTGG	4 cut(s)	78, 85, 143, 522
Bse3DI	GCAATG	2 cut(s)	570, 965
BseBI	CCWGG	1 cut(s)	389
BseDI	CCNNGG	2 cut(s)	475, 895
BseGI	GGATG	2 cut(s)	10, 992
BseLI	CCNNNNNNNGG	4 cut(s)	243, 692, 745, 812
BseMI	GCAATG	2 cut(s)	570, 965
BseMII	CTCAG	3 cut(s)	162, 176, 879
BseNI	ACTGG	4 cut(s)	78, 85, 143, 522
BseRI	GAGGAG	2 cut(s)	311, 520
BseXI	GCAGC	4 cut(s)	688, 691, 772, 1031
BseYI	CCCAGC	2 cut(s)	817, 1034
Bsh1236I	CGCG	3 cut(s)	129, 341, 735
BshFI	GGCC	4 cut(s)	190, 369, 738, 816
BshTI	ACCGGT	1 cut(s)	345
BsiHKCI	CYCGRG	2 cut(s)	293, 475
BsiSI	CCGG	9 cut(s)	187, 282, 346, 354, 366, 420, 476, 502, 645
BslFI	GGGAC	4 cut(s)	220, 599, 850, 941
BslI	CCNNNNNNNGG	4 cut(s)	243, 692, 745, 812
BsmAI	GTCTC	6 cut(s)	24, 290, 406, 523, 701, 771
BsmBI	CGTCTC	3 cut(s)	24, 406, 523
BsmFI	GGGAC	4 cut(s)	220, 599, 850, 941
BsnI	GGCC	4 cut(s)	190, 369, 738, 816
Bso31I	GGTCTC	2 cut(s)	290, 701
BsoBI	CYCGRG	2 cut(s)	293, 475
Bsp119I	TTCGAA	1 cut(s)	853
Bsp1286I	GDGCHC	1 cut(s)	807
Bsp143I	GATC	2 cut(s)	259, 655
BspANI	GGCC	4 cut(s)	190, 369, 738, 816
BspCNI	CTCAG	3 cut(s)	161, 175, 880
BspFNI	CGCG	3 cut(s)	129, 341, 735
BspLI	GGNNCC	3 cut(s)	177, 191, 632
BspMI	ACCTGC	1 cut(s)	539
BspT104I	TTCGAA	1 cut(s)	853
BspTNI	GGTCTC	2 cut(s)	290, 701
BsrDI	GCAATG	2 cut(s)	570, 965
BsrFI	RCCGGY	1 cut(s)	345
BsrI	ACTGG	4 cut(s)	78, 85, 143, 522
BssAI	RCCGGY	1 cut(s)	345
BssECI	CCNNGG	2 cut(s)	475, 895
BssMI	GATC	2 cut(s)	259, 655
BssNI	GRCGYC	2 cut(s)	555, 612
Bst2UI	CCWGG	1 cut(s)	389
Bst4CI	ACNGT	5 cut(s)	13, 108, 301, 413, 548
Bst6I	CTCTTC	1 cut(s)	969
BstACI	GRCGYC	2 cut(s)	555, 612
BstBAI	YACGTR	1 cut(s)	35
BstBI	TTCGAA	1 cut(s)	853
BstC8I	GCNNGC	1 cut(s)	1041
BstDEI	CTNAG	4 cut(s)	148, 162, 888, 1044
BstF5I	GGATG	2 cut(s)	10, 992
BstFNI	CGCG	3 cut(s)	129, 341, 735
BstH2I	RGCGCY	1 cut(s)	135
BstHHI	GCGC	2 cut(s)	134, 469
BstKTI	GATC	2 cut(s)	262, 658
BstMAI	GTCTC	6 cut(s)	24, 290, 406, 523, 701, 771
BstMBI	GATC	2 cut(s)	259, 655
BstMWI	GCNNNNNNNGC	5 cut(s)	187, 760, 872, 939, 1040
BstNI	CCWGG	1 cut(s)	389
BstSCI	CCNGG	4 cut(s)	387, 474, 475, 500
BstUI	CGCG	3 cut(s)	129, 341, 735
BstV1I	GCAGC	4 cut(s)	688, 691, 772, 1031
BsuRI	GGCC	4 cut(s)	190, 369, 738, 816
BtrI	CACGTC	1 cut(s)	677
BtsCI	GGATG	2 cut(s)	10, 992
BtsIMutI	CAGTG	4 cut(s)	71, 78, 84, 104
BveI	ACCTGC	1 cut(s)	539
Cac8I	GCNNGC	1 cut(s)	1041
CfoI	GCGC	2 cut(s)	134, 469
Cfr10I	RCCGGY	1 cut(s)	345
Cfr13I	GGNCC	3 cut(s)	189, 683, 815
Cfr9I	CCCGGG	1 cut(s)	475
CseI	GACGC	3 cut(s)	347, 505, 544
Csp6I	GTAC	2 cut(s)	32, 935
CspAI	ACCGGT	1 cut(s)	345
CspCI	CAANNNNNGTGG	2 cut(s)	532, 567
CviAII	CATG	2 cut(s)	29, 1025
CviQI	GTAC	2 cut(s)	32, 935
DdeI	CTNAG	4 cut(s)	148, 162, 888, 1044
DpnI	GATC	2 cut(s)	261, 657
DpnII	GATC	2 cut(s)	259, 655
DrdI	GACNNNNNNGTC	2 cut(s)	16, 681
DseDI	GACNNNNNNGTC	2 cut(s)	16, 681
EaeI	YGGCCR	1 cut(s)	736
Eam1104I	CTCTTC	1 cut(s)	969
EarI	CTCTTC	1 cut(s)	969
EciI	GGCGGA	3 cut(s)	320, 740, 915
Eco24I	GRGCYC	1 cut(s)	807
Eco31I	GGTCTC	2 cut(s)	290, 701
Eco47I	GGWCC	1 cut(s)	683
Eco57I	CTGAAG	1 cut(s)	189
Eco88I	CYCGRG	2 cut(s)	293, 475
EcoRII	CCWGG	1 cut(s)	387
EcoT38I	GRGCYC	1 cut(s)	807
Esp3I	CGTCTC	3 cut(s)	24, 406, 523
FaeI	CATG	2 cut(s)	32, 1028
FaiI	YATR	6 cut(s)	30, 47, 377, 663, 809, 1026
FaqI	GGGAC	4 cut(s)	220, 599, 850, 941
FatI	CATG	2 cut(s)	28, 1024
FauI	CCCGC	2 cut(s)	229, 912
FblI	GTMKAC	2 cut(s)	609, 793
Fnu4HI	GCNGC	8 cut(s)	119, 130, 702, 705, 736, 747, 761, 1020
FokI	GGATG	2 cut(s)	17, 999
FriOI	GRGCYC	1 cut(s)	807
Fsp4HI	GCNGC	8 cut(s)	119, 130, 702, 705, 736, 747, 761, 1020
FspI	TGCGCA	1 cut(s)	468
GlaI	GCGC	2 cut(s)	133, 468
GluI	GCNGC	8 cut(s)	119, 130, 702, 705, 736, 747, 761, 1020
GsaI	CCCAGC	2 cut(s)	821, 1038
GsuI	CTGGAG	4 cut(s)	371, 505, 795, 897
HaeII	RGCGCY	1 cut(s)	135
HaeIII	GGCC	4 cut(s)	190, 369, 738, 816
HapII	CCGG	9 cut(s)	187, 282, 346, 354, 366, 420, 476, 502, 645
HgaI	GACGC	3 cut(s)	347, 505, 544
HhaI	GCGC	2 cut(s)	134, 469
Hin1I	GRCGYC	2 cut(s)	555, 612
Hin1II	CATG	2 cut(s)	32, 1028
Hin6I	GCGC	2 cut(s)	132, 467
HinP1I	GCGC	2 cut(s)	132, 467
HincII	GTYRAC	3 cut(s)	145, 304, 610
HindII	GTYRAC	3 cut(s)	145, 304, 610
HindIII	AAGCTT	2 cut(s)	768, 1041
HinfI	GANTC	8 cut(s)	50, 146, 313, 455, 494, 641, 650, 1007
HpaII	CCGG	9 cut(s)	187, 282, 346, 354, 366, 420, 476, 502, 645
HphI	GGTGA	2 cut(s)	296, 983
Hpy166II	GTNNAC	5 cut(s)	145, 304, 592, 610, 794
Hpy188I	TCNGA	6 cut(s)	55, 156, 214, 454, 602, 655
Hpy188III	TCNNGA	5 cut(s)	198, 293, 774, 830, 926
Hpy8I	GTNNAC	5 cut(s)	145, 304, 592, 610, 794
Hpy99I	CGWCG	5 cut(s)	341, 614, 678, 803, 957
HpyAV	CCTTC	1 cut(s)	849
HpyCH4III	ACNGT	5 cut(s)	13, 108, 301, 413, 548
HpyCH4IV	ACGT	8 cut(s)	17, 34, 92, 233, 399, 588, 612, 676
HpyCH4V	TGCA	2 cut(s)	461, 534
HpyF10VI	GCNNNNNNNGC	5 cut(s)	187, 760, 872, 939, 1040
HpyF3I	CTNAG	4 cut(s)	148, 162, 888, 1044
HpySE526I	ACGT	8 cut(s)	17, 34, 92, 233, 399, 588, 612, 676
Hsp92I	GRCGYC	2 cut(s)	555, 612
Hsp92II	CATG	2 cut(s)	32, 1028
HspAI	GCGC	2 cut(s)	132, 467
Kzo9I	GATC	2 cut(s)	259, 655
LmnI	GCTCC	2 cut(s)	157, 507
Lsp1109I	GCAGC	4 cut(s)	688, 691, 772, 1031
LweI	GCATC	2 cut(s)	110, 977
MaeII	ACGT	8 cut(s)	17, 34, 92, 233, 399, 588, 612, 676
MaeIII	GTNAC	4 cut(s)	7, 13, 59, 229
MalI	GATC	2 cut(s)	261, 657
MboI	GATC	2 cut(s)	259, 655
MboII	GAAGA	3 cut(s)	797, 986, 1016
MhlI	GDGCHC	1 cut(s)	807
MluCI	AATT	3 cut(s)	288, 426, 994
MlyI	GAGTC	5 cut(s)	140, 307, 488, 644, 650
MmeI	TCCRAC	1 cut(s)	237
MroXI	GAANNNNTTC	3 cut(s)	347, 867, 1011
MslI	CAYNNNNRTG	2 cut(s)	33, 1029
MspA1I	CMGCKG	1 cut(s)	118
MspI	CCGG	9 cut(s)	187, 282, 346, 354, 366, 420, 476, 502, 645
MspR9I	CCNGG	4 cut(s)	389, 476, 477, 502
MvaI	CCWGG	1 cut(s)	389
MvnI	CGCG	3 cut(s)	129, 341, 735
MwoI	GCNNNNNNNGC	5 cut(s)	187, 760, 872, 939, 1040
NciI	CCSGG	3 cut(s)	476, 477, 502
NdeII	GATC	2 cut(s)	259, 655
NlaIII	CATG	2 cut(s)	32, 1028
NlaIV	GGNNCC	3 cut(s)	177, 191, 632
NmeAIII	GCCGAG	3 cut(s)	383, 792, 876
NmuCI	GTSAC	1 cut(s)	7
NsbI	TGCGCA	1 cut(s)	468
NspV	TTCGAA	1 cut(s)	853
PcsI	WCGNNNNNNNCGW	1 cut(s)	606
PdmI	GAANNNNTTC	3 cut(s)	347, 867, 1011
PfeI	GAWTC	3 cut(s)	50, 455, 1007
PfoI	TCCNGGA	1 cut(s)	387
PinAI	ACCGGT	1 cut(s)	345
PkrI	GCNGC	8 cut(s)	120, 131, 703, 706, 737, 748, 762, 1021
PleI	GAGTC	5 cut(s)	140, 307, 488, 644, 649
PpsI	GAGTC	5 cut(s)	140, 307, 488, 644, 649
Ppu21I	YACGTR	1 cut(s)	35
Psp6I	CCWGG	1 cut(s)	387
PspFI	CCCAGC	2 cut(s)	817, 1034
PspGI	CCWGG	1 cut(s)	387
PspN4I	GGNNCC	3 cut(s)	177, 191, 632
PspPI	GGNCC	3 cut(s)	189, 683, 815
RsaI	GTAC	2 cut(s)	33, 936
RsaNI	GTAC	2 cut(s)	32, 935
RseI	CAYNNNNRTG	2 cut(s)	33, 1029
SalI	GTCGAC	1 cut(s)	608
SatI	GCNGC	8 cut(s)	119, 130, 702, 705, 736, 747, 761, 1020
Sau3AI	GATC	2 cut(s)	259, 655
Sau96I	GGNCC	3 cut(s)	189, 683, 815
SchI	GAGTC	5 cut(s)	140, 307, 488, 644, 650
ScrFI	CCNGG	4 cut(s)	389, 476, 477, 502
SduI	GDGCHC	1 cut(s)	807
SfaNI	GCATC	2 cut(s)	110, 977
SfuI	TTCGAA	1 cut(s)	853
SinI	GGWCC	1 cut(s)	683
SmaI	CCCGGG	1 cut(s)	477
SmiMI	CAYNNNNRTG	2 cut(s)	33, 1029
SmlI	CTYRAG	1 cut(s)	981
SmoI	CTYRAG	1 cut(s)	981
Sse9I	AATT	3 cut(s)	288, 426, 994
StyD4I	CCNGG	4 cut(s)	387, 474, 475, 500
TaaI	ACNGT	5 cut(s)	13, 108, 301, 413, 548
TaiI	ACGT	8 cut(s)	20, 37, 95, 236, 402, 591, 615, 679
TasI	AATT	3 cut(s)	288, 426, 994
TauI	GCSGC	4 cut(s)	121, 132, 738, 749
TfiI	GAWTC	3 cut(s)	50, 455, 1007
TscAI	CASTG	4 cut(s)	78, 85, 91, 111
TseFI	GTSAC	1 cut(s)	7
TseI	GCWGC	4 cut(s)	701, 704, 760, 1019
Tsp45I	GTSAC	1 cut(s)	7
TspDTI	ATGAA	1 cut(s)	559
TspGWI	ACGGA	2 cut(s)	217, 640
TspMI	CCCGGG	1 cut(s)	475
TspRI	CASTG	4 cut(s)	78, 85, 91, 111
VpaK11BI	GGWCC	1 cut(s)	683
XapI	RAATTY	2 cut(s)	288, 426
XmaI	CCCGGG	1 cut(s)	475
XmiI	GTMKAC	2 cut(s)	609, 793
XmnI	GAANNNNTTC	3 cut(s)	347, 867, 1011
ZraI	GACGTC	1 cut(s)	613

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.