Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4C

Orthogroup ID

OG0024805

Physical Location & Seq

Genomic Coordinates Reverse (-)

23794835 .. 23833421

Gene Structure 38587 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4CG123500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 663 bp

ATGAATCCAGAGAACTGGATCAAAGAATTGGTAATCATAGAAGACATGTTTACATTGCTCCAAGATGGAGACGTTGAACAGATCATGGAGAGCAGTGGAAGTTCCAGCTATGGAGATGAGCAAACACCTGTCACAGACCTACAACAACTACGATATTTTCAGCCTACATATGCTGATGGGCTCCGTGCAGAAGCCAGGGTTGGAGTTCCTGGTGAGCATCGGGGAATCCTTTGTGAGCATCATGTATTCCGGATACTCAAGCACTGGTTGAAAGCCGACCATGACCCTTACTACAACCCTCTAAACGATTATGTGGTTCTACCCACTGCGTTTGAAATGGAGAAGCACAAAGAGAAAGGACTCGAAGTAACATCTCTTAAAGAGGAGTGGGAAATCATTGCAGACGATCAAGACGATAATTACAAGAATATAACTGCTGATGGAAACCCTATGGTGAGCTCCATATCTTTTTCTCAAGAGGGAGCAGAGTCTCGTGCAACTGTCACTGTTTACCCTGAGAATGAGGGCAAACAACATGTGGAGCTCAATGCTCTAAGTGTTCAGCGTCATTGTATCTTAATCTCAAATGAGCTAACAGCCACAATCTGGTGCTCCTGCTTCCAGAAAGAGGAGGTTCATACCAAAAGCTCATACAAAGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004620 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006629 GO:0006644 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009056 GO:0009395 GO:0009987 GO:0016042 GO:0016298 GO:0016787 GO:0016788 GO:0019637 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0046434 GO:0071704 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00564 ko00592 ko01100 ko01110 map00564 map00592 map01100 map01110

Pfam Domains

Protein Families

LCAT

Protein Analysis

220

Amino Acids

25.14

Weight (kDa)

4.74

Isoelectric Point (pI)

39.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0024805)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0113811
rosa_samantha	Rh4CG123500 Rh5AG345700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	606
AccIII	TCCGGA	1 cut(s)	249
AclWI	GGATC	1 cut(s)	26
AfiI	CCNNNNNNNGG	2 cut(s)	606, 628
AflIII	ACRYGT	2 cut(s)	45, 535
AgsI	TTSAA	3 cut(s)	77, 271, 335
AjnI	CCWGG	2 cut(s)	194, 208
AjuI	GAANNNNNNNTTGG	2 cut(s)	183, 215
AluBI	AGCT	5 cut(s)	108, 459, 544, 592, 648
AluI	AGCT	5 cut(s)	108, 459, 544, 592, 648
Alw21I	GWGCWC	3 cut(s)	461, 546, 614
Alw26I	GTCTC	2 cut(s)	63, 495
AlwI	GGATC	1 cut(s)	26
Aor13HI	TCCGGA	1 cut(s)	249
AsuHPI	GGTGA	2 cut(s)	224, 466
BanII	GRGCYC	3 cut(s)	183, 461, 546
BauI	CACGAG	1 cut(s)	492
BbsI	GAAGAC	1 cut(s)	48
Bbv12I	GWGCWC	3 cut(s)	461, 546, 614
BccI	CCATC	3 cut(s)	59, 170, 434
BciT130I	CCWGG	2 cut(s)	196, 210
BciVI	GTATCC	1 cut(s)	246
BcoDI	GTCTC	2 cut(s)	63, 495
BfuI	GTATCC	1 cut(s)	246
Bme1390I	CCNGG	2 cut(s)	196, 210
BmiI	GGNNCC	1 cut(s)	182
BmrFI	CCNGG	2 cut(s)	196, 210
BmsI	GCATC	2 cut(s)	226, 247
BpiI	GAAGAC	1 cut(s)	48
BpuEI	CTTGAG	2 cut(s)	242, 459
BsaJI	CCNNGG	1 cut(s)	195
BsaWI	WCCGGW	1 cut(s)	249
Bsc4I	CCNNNNNNNGG	2 cut(s)	606, 628
Bse1I	ACTGG	2 cut(s)	20, 269
Bse3DI	GCAATG	2 cut(s)	53, 396
BseAI	TCCGGA	1 cut(s)	249
BseBI	CCWGG	2 cut(s)	196, 210
BseDI	CCNNGG	1 cut(s)	195
BseLI	CCNNNNNNNGG	2 cut(s)	606, 628
BseMI	GCAATG	2 cut(s)	53, 396
BseMII	CTCAG	1 cut(s)	507
BseNI	ACTGG	2 cut(s)	20, 269
BseRI	GAGGAG	2 cut(s)	398, 644
BsgI	GTGCAG	1 cut(s)	207
BsiHKAI	GWGCWC	3 cut(s)	461, 546, 614
BsiSI	CCGG	1 cut(s)	250
BslI	CCNNNNNNNGG	2 cut(s)	606, 628
BsmAI	GTCTC	2 cut(s)	63, 495
BsmBI	CGTCTC	1 cut(s)	63
Bsp1286I	GDGCHC	4 cut(s)	183, 461, 546, 614
Bsp13I	TCCGGA	1 cut(s)	249
Bsp143I	GATC	3 cut(s)	18, 81, 406
BspCNI	CTCAG	1 cut(s)	508
BspEI	TCCGGA	1 cut(s)	249
BspLI	GGNNCC	1 cut(s)	182
BspPI	GGATC	1 cut(s)	26
BsrDI	GCAATG	2 cut(s)	53, 396
BsrI	ACTGG	2 cut(s)	20, 269
BssECI	CCNNGG	1 cut(s)	195
BssMI	GATC	3 cut(s)	18, 81, 406
BssSI	CACGAG	1 cut(s)	492
Bst2BI	CACGAG	1 cut(s)	492
Bst2UI	CCWGG	2 cut(s)	196, 210
Bst4CI	ACNGT	2 cut(s)	502, 508
BstDEI	CTNAG	2 cut(s)	516, 554
BstKTI	GATC	3 cut(s)	21, 84, 409
BstMAI	GTCTC	2 cut(s)	63, 495
BstMBI	GATC	3 cut(s)	18, 81, 406
BstNI	CCWGG	2 cut(s)	196, 210
BstNSI	RCATGY	2 cut(s)	49, 539
BstSCI	CCNGG	2 cut(s)	194, 208
BstV2I	GAAGAC	1 cut(s)	48
BstXI	CCANNNNNNTGG	1 cut(s)	15
BsuI	GTATCC	1 cut(s)	246
BtsI	GCAGTG	2 cut(s)	100, 324
BtsIMutI	CAGTG	4 cut(s)	100, 262, 324, 504
CseI	GACGC	1 cut(s)	554
CspCI	CAANNNNNGTGG	2 cut(s)	313, 348
CviAII	CATG	5 cut(s)	46, 85, 242, 281, 536
DdeI	CTNAG	2 cut(s)	516, 554
DpnI	GATC	3 cut(s)	20, 83, 408
DpnII	GATC	3 cut(s)	18, 81, 406
Ecl136II	GAGCTC	2 cut(s)	459, 544
Eco24I	GRGCYC	3 cut(s)	183, 461, 546
Eco53kI	GAGCTC	2 cut(s)	459, 544
EcoICRI	GAGCTC	2 cut(s)	459, 544
EcoRII	CCWGG	2 cut(s)	194, 208
EcoT38I	GRGCYC	3 cut(s)	183, 461, 546
Esp3I	CGTCTC	1 cut(s)	63
FaeI	CATG	5 cut(s)	49, 88, 245, 284, 539
FatI	CATG	5 cut(s)	45, 84, 241, 280, 535
FauNDI	CATATG	1 cut(s)	169
FriOI	GRGCYC	3 cut(s)	183, 461, 546
HapII	CCGG	1 cut(s)	250
HgaI	GACGC	1 cut(s)	554
Hin1II	CATG	5 cut(s)	49, 88, 245, 284, 539
HinfI	GANTC	4 cut(s)	4, 225, 360, 488
HpaII	CCGG	1 cut(s)	250
HphI	GGTGA	2 cut(s)	224, 466
Hpy166II	GTNNAC	2 cut(s)	51, 511
Hpy188III	TCNNGA	5 cut(s)	8, 250, 410, 476, 622
Hpy8I	GTNNAC	2 cut(s)	51, 511
HpyCH4III	ACNGT	2 cut(s)	502, 508
HpyCH4IV	ACGT	1 cut(s)	72
HpyCH4V	TGCA	3 cut(s)	188, 401, 497
HpyF3I	CTNAG	2 cut(s)	516, 554
HpySE526I	ACGT	1 cut(s)	72
Hsp92II	CATG	5 cut(s)	49, 88, 245, 284, 539
Kpn2I	TCCGGA	1 cut(s)	249
Kzo9I	GATC	3 cut(s)	18, 81, 406
LmnI	GCTCC	6 cut(s)	63, 186, 464, 482, 541, 617
LweI	GCATC	2 cut(s)	226, 247
MaeII	ACGT	1 cut(s)	72
MaeIII	GTNAC	3 cut(s)	130, 367, 502
MalI	GATC	3 cut(s)	20, 83, 408
MboI	GATC	3 cut(s)	18, 81, 406
MboII	GAAGA	1 cut(s)	53
MhlI	GDGCHC	4 cut(s)	183, 461, 546, 614
MluCI	AATT	2 cut(s)	26, 418
MlyI	GAGTC	2 cut(s)	354, 497
MmeI	TCCRAC	1 cut(s)	181
MnlI	CCTC	6 cut(s)	309, 376, 472, 517, 622, 625
MroI	TCCGGA	1 cut(s)	249
MseI	TTAA	2 cut(s)	378, 578
MspI	CCGG	1 cut(s)	250
MspR9I	CCNGG	2 cut(s)	196, 210
MvaI	CCWGG	2 cut(s)	196, 210
NdeI	CATATG	1 cut(s)	169
NdeII	GATC	3 cut(s)	18, 81, 406
NlaIII	CATG	5 cut(s)	49, 88, 245, 284, 539
NlaIV	GGNNCC	1 cut(s)	182
NmuCI	GTSAC	2 cut(s)	130, 502
NspI	RCATGY	2 cut(s)	49, 539
PciI	ACATGT	2 cut(s)	45, 535
PcsI	WCGNNNNNNNCGW	1 cut(s)	411
PfeI	GAWTC	2 cut(s)	4, 225
PflMI	CCANNNNNTGG	1 cut(s)	606
PleI	GAGTC	2 cut(s)	354, 496
PpsI	GAGTC	2 cut(s)	354, 496
PscI	ACATGT	2 cut(s)	45, 535
Psp124BI	GAGCTC	2 cut(s)	461, 546
Psp6I	CCWGG	2 cut(s)	194, 208
PspGI	CCWGG	2 cut(s)	194, 208
PspN4I	GGNNCC	1 cut(s)	182
SacI	GAGCTC	2 cut(s)	461, 546
SaqAI	TTAA	2 cut(s)	378, 578
Sau3AI	GATC	3 cut(s)	18, 81, 406
SchI	GAGTC	2 cut(s)	354, 497
ScrFI	CCNGG	2 cut(s)	196, 210
SduI	GDGCHC	4 cut(s)	183, 461, 546, 614
SetI	ASST	9 cut(s)	75, 110, 130, 141, 461, 546, 594, 636, 650
SfaNI	GCATC	2 cut(s)	226, 247
SmlI	CTYRAG	2 cut(s)	257, 474
SmoI	CTYRAG	2 cut(s)	257, 474
Sse9I	AATT	2 cut(s)	26, 418
SstI	GAGCTC	2 cut(s)	461, 546
StyD4I	CCNGG	2 cut(s)	194, 208
TaaI	ACNGT	2 cut(s)	502, 508
TaiI	ACGT	1 cut(s)	75
TaqI	TCGA	1 cut(s)	363
TasI	AATT	2 cut(s)	26, 418
TfiI	GAWTC	2 cut(s)	4, 225
Tru1I	TTAA	2 cut(s)	378, 578
Tru9I	TTAA	2 cut(s)	378, 578
TscAI	CASTG	4 cut(s)	100, 269, 331, 511
TseFI	GTSAC	2 cut(s)	130, 502
Tsp45I	GTSAC	2 cut(s)	130, 502
TspDTI	ATGAA	2 cut(s)	17, 626
TspGWI	ACGGA	1 cut(s)	173
TspRI	CASTG	4 cut(s)	100, 269, 331, 511
Van91I	CCANNNNNTGG	1 cut(s)	606
XceI	RCATGY	2 cut(s)	49, 539

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.