Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0024805

Physical Location & Seq

Genomic Coordinates Reverse (-)

56980346 .. 56982231

Gene Structure 1886 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG345700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 507 bp

ATGTTAACTAGTCTTCCACTTCACATTTCTTTCAATAATTGGCAGAAGTTTGCAATAGAACTGGCAATCTTTATAAGCCGTCTCTTTTTCATCAAATTCCAGGCTGATGGGCTCCGTGCAGAAGCCAGGGTTGGAGTTCCTGGTGAGCATCGGGGAATCCTTTGTGAGCATCATGTATTCCGGATACTCAAGCACTGGTTGAAAGCAGACCATGACCCTTACTACAACCCTCTAAACGATTATGTGGTTCTACCCACTGCGTTTGAAATGGAGAAGCACAAAGAGAAAGGACTCGAAGTAACATCTCTTAAAGAGGAGTGGGAAATCATTGCAGACGATCAAGACGATAATTACAAGAATATAACTGCTGATGGAAACCCTATGGTGAGCTCCATATCTTTTTCTCAAGAGGGAGCAGAGGCTCGTGCAACTGTCACTGTTTACCCTGAGAATGAGGGCAAACAACATGTGGAGCTCAATGCTCTAAGTGTGTCGGTTGATGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004620 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006629 GO:0006644 GO:0006793 GO:0006796 GO:0008150 GO:0008152 GO:0009056 GO:0009395 GO:0009987 GO:0016042 GO:0016298 GO:0016787 GO:0016788 GO:0019637 GO:0044237 GO:0044238 GO:0044242 GO:0044248 GO:0044255 GO:0044424 GO:0044444 GO:0044464 GO:0046434 GO:0071704 GO:1901575

KEGG Pathways

Metabolic & Signaling

ko00564 ko00592 ko01100 ko01110 map00564 map00592 map01100 map01110

Pfam Domains

Protein Families

LCAT

Protein Analysis

168

Amino Acids

19.15

Weight (kDa)

5.19

Isoelectric Point (pI)

25.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0024805)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr2g0113811
rosa_samantha	Rh4CG123500 Rh5AG345700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	74
AccIII	TCCGGA	1 cut(s)	180
AcsI	RAATTY	1 cut(s)	95
AflIII	ACRYGT	1 cut(s)	466
AgsI	TTSAA	3 cut(s)	34, 202, 266
AhlI	ACTAGT	1 cut(s)	8
AjnI	CCWGG	3 cut(s)	99, 125, 139
AjuI	GAANNNNNNNTTGG	2 cut(s)	114, 146
AluBI	AGCT	2 cut(s)	390, 475
AluI	AGCT	2 cut(s)	390, 475
Alw21I	GWGCWC	2 cut(s)	392, 477
Alw26I	GTCTC	1 cut(s)	86
Aor13HI	TCCGGA	1 cut(s)	180
ApoI	RAATTY	1 cut(s)	95
AsuHPI	GGTGA	2 cut(s)	155, 397
BanII	GRGCYC	3 cut(s)	114, 392, 477
BauI	CACGAG	1 cut(s)	423
BbsI	GAAGAC	1 cut(s)	5
Bbv12I	GWGCWC	2 cut(s)	392, 477
BccI	CCATC	2 cut(s)	101, 365
BceAI	ACGGC	1 cut(s)	63
BciT130I	CCWGG	3 cut(s)	101, 127, 141
BciVI	GTATCC	1 cut(s)	177
BcoDI	GTCTC	1 cut(s)	86
BcuI	ACTAGT	1 cut(s)	8
BfaI	CTAG	1 cut(s)	9
BfuI	GTATCC	1 cut(s)	177
Bme1390I	CCNGG	3 cut(s)	101, 127, 141
BmiI	GGNNCC	1 cut(s)	113
BmrFI	CCNGG	3 cut(s)	101, 127, 141
BmsI	GCATC	3 cut(s)	157, 178, 490
BpiI	GAAGAC	1 cut(s)	5
BpuEI	CTTGAG	2 cut(s)	173, 390
BsaJI	CCNNGG	1 cut(s)	126
BsaWI	WCCGGW	1 cut(s)	180
Bse1I	ACTGG	2 cut(s)	66, 200
Bse3DI	GCAATG	1 cut(s)	327
BseAI	TCCGGA	1 cut(s)	180
BseBI	CCWGG	3 cut(s)	101, 127, 141
BseDI	CCNNGG	1 cut(s)	126
BseMI	GCAATG	1 cut(s)	327
BseMII	CTCAG	1 cut(s)	438
BseNI	ACTGG	2 cut(s)	66, 200
BseRI	GAGGAG	1 cut(s)	329
BsgI	GTGCAG	1 cut(s)	138
BsiHKAI	GWGCWC	2 cut(s)	392, 477
BsiSI	CCGG	1 cut(s)	181
BsmAI	GTCTC	1 cut(s)	86
BsmBI	CGTCTC	1 cut(s)	86
Bsp1286I	GDGCHC	3 cut(s)	114, 392, 477
Bsp13I	TCCGGA	1 cut(s)	180
Bsp143I	GATC	1 cut(s)	337
BspCNI	CTCAG	1 cut(s)	439
BspEI	TCCGGA	1 cut(s)	180
BspLI	GGNNCC	1 cut(s)	113
BsrDI	GCAATG	1 cut(s)	327
BsrI	ACTGG	2 cut(s)	66, 200
BssECI	CCNNGG	1 cut(s)	126
BssMI	GATC	1 cut(s)	337
BssSI	CACGAG	1 cut(s)	423
Bst2BI	CACGAG	1 cut(s)	423
Bst2UI	CCWGG	3 cut(s)	101, 127, 141
Bst4CI	ACNGT	2 cut(s)	433, 439
BstDEI	CTNAG	2 cut(s)	447, 485
BstKTI	GATC	1 cut(s)	340
BstMAI	GTCTC	1 cut(s)	86
BstMBI	GATC	1 cut(s)	337
BstNI	CCWGG	3 cut(s)	101, 127, 141
BstNSI	RCATGY	1 cut(s)	470
BstSCI	CCNGG	3 cut(s)	99, 125, 139
BstV2I	GAAGAC	1 cut(s)	5
BstXI	CCANNNNNNTGG	1 cut(s)	107
BsuI	GTATCC	1 cut(s)	177
BtsI	GCAGTG	1 cut(s)	255
BtsIMutI	CAGTG	3 cut(s)	193, 255, 435
CspCI	CAANNNNNGTGG	2 cut(s)	244, 279
CviAII	CATG	3 cut(s)	173, 212, 467
CviJI	RGCY	7 cut(s)	78, 104, 112, 125, 390, 422, 475
CviKI_1	RGCY	7 cut(s)	78, 104, 112, 125, 390, 422, 475
DdeI	CTNAG	2 cut(s)	447, 485
DpnI	GATC	1 cut(s)	339
DpnII	GATC	1 cut(s)	337
Ecl136II	GAGCTC	2 cut(s)	390, 475
Eco24I	GRGCYC	3 cut(s)	114, 392, 477
Eco53kI	GAGCTC	2 cut(s)	390, 475
EcoICRI	GAGCTC	2 cut(s)	390, 475
EcoRII	CCWGG	3 cut(s)	99, 125, 139
EcoT38I	GRGCYC	3 cut(s)	114, 392, 477
Esp3I	CGTCTC	1 cut(s)	86
FaeI	CATG	3 cut(s)	176, 215, 470
FaiI	YATR	8 cut(s)	74, 174, 213, 243, 362, 383, 395, 468
FatI	CATG	3 cut(s)	172, 211, 466
FriOI	GRGCYC	3 cut(s)	114, 392, 477
FspBI	CTAG	1 cut(s)	9
HapII	CCGG	1 cut(s)	181
Hin1II	CATG	3 cut(s)	176, 215, 470
HincII	GTYRAC	1 cut(s)	6
HindII	GTYRAC	1 cut(s)	6
HinfI	GANTC	2 cut(s)	156, 291
HpaI	GTTAAC	1 cut(s)	6
HpaII	CCGG	1 cut(s)	181
HphI	GGTGA	2 cut(s)	155, 397
Hpy166II	GTNNAC	2 cut(s)	6, 442
Hpy188III	TCNNGA	3 cut(s)	181, 341, 407
Hpy8I	GTNNAC	2 cut(s)	6, 442
HpyCH4III	ACNGT	2 cut(s)	433, 439
HpyCH4V	TGCA	4 cut(s)	53, 119, 332, 428
HpyF3I	CTNAG	2 cut(s)	447, 485
Hsp92II	CATG	3 cut(s)	176, 215, 470
Kpn2I	TCCGGA	1 cut(s)	180
KspAI	GTTAAC	1 cut(s)	6
Kzo9I	GATC	1 cut(s)	337
LmnI	GCTCC	4 cut(s)	117, 395, 413, 472
LweI	GCATC	3 cut(s)	157, 178, 490
MaeI	CTAG	1 cut(s)	9
MaeIII	GTNAC	2 cut(s)	298, 433
MalI	GATC	1 cut(s)	339
MboI	GATC	1 cut(s)	337
MboII	GAAGA	1 cut(s)	5
MhlI	GDGCHC	3 cut(s)	114, 392, 477
MluCI	AATT	3 cut(s)	37, 95, 349
MlyI	GAGTC	1 cut(s)	285
MmeI	TCCRAC	1 cut(s)	112
MnlI	CCTC	5 cut(s)	240, 307, 403, 412, 448
MroI	TCCGGA	1 cut(s)	180
MseI	TTAA	2 cut(s)	5, 309
MspI	CCGG	1 cut(s)	181
MspR9I	CCNGG	3 cut(s)	101, 127, 141
MvaI	CCWGG	3 cut(s)	101, 127, 141
NdeII	GATC	1 cut(s)	337
NlaIII	CATG	3 cut(s)	176, 215, 470
NlaIV	GGNNCC	1 cut(s)	113
NmuCI	GTSAC	1 cut(s)	433
NspI	RCATGY	1 cut(s)	470
PciI	ACATGT	1 cut(s)	466
PcsI	WCGNNNNNNNCGW	1 cut(s)	342
PfeI	GAWTC	1 cut(s)	156
PleI	GAGTC	1 cut(s)	285
PpsI	GAGTC	1 cut(s)	285
PscI	ACATGT	1 cut(s)	466
PsiI	TTATAA	1 cut(s)	74
Psp124BI	GAGCTC	2 cut(s)	392, 477
Psp6I	CCWGG	3 cut(s)	99, 125, 139
PspGI	CCWGG	3 cut(s)	99, 125, 139
PspN4I	GGNNCC	1 cut(s)	113
SacI	GAGCTC	2 cut(s)	392, 477
SaqAI	TTAA	2 cut(s)	5, 309
Sau3AI	GATC	1 cut(s)	337
SchI	GAGTC	1 cut(s)	285
ScrFI	CCNGG	3 cut(s)	101, 127, 141
SduI	GDGCHC	3 cut(s)	114, 392, 477
SetI	ASST	2 cut(s)	392, 477
SfaNI	GCATC	3 cut(s)	157, 178, 490
SmlI	CTYRAG	2 cut(s)	188, 405
SmoI	CTYRAG	2 cut(s)	188, 405
SpeI	ACTAGT	1 cut(s)	8
Sse9I	AATT	3 cut(s)	37, 95, 349
SspMI	CTAG	1 cut(s)	9
SstI	GAGCTC	2 cut(s)	392, 477
StyD4I	CCNGG	3 cut(s)	99, 125, 139
TaaI	ACNGT	2 cut(s)	433, 439
TaqI	TCGA	1 cut(s)	294
TasI	AATT	3 cut(s)	37, 95, 349
TfiI	GAWTC	1 cut(s)	156
Tru1I	TTAA	2 cut(s)	5, 309
Tru9I	TTAA	2 cut(s)	5, 309
TscAI	CASTG	3 cut(s)	200, 262, 442
TseFI	GTSAC	1 cut(s)	433
Tsp45I	GTSAC	1 cut(s)	433
TspDTI	ATGAA	1 cut(s)	79
TspGWI	ACGGA	1 cut(s)	104
TspRI	CASTG	3 cut(s)	200, 262, 442
XapI	RAATTY	1 cut(s)	95
XceI	RCATGY	1 cut(s)	470
XspI	CTAG	1 cut(s)	9

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.