Rh4DG392500

At1g04910-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0008280
Physical Location & Seq
Forward (+)
60834607 .. 60840409
5803 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG392500.1

Sequence Viewer

Length: 1596 bp
ATGCACCCATACAACCGGCTACCGAGTAGCGGACACAGCAGCCCGTCGCCGCCGCATTCCCCGCTCCGTTCCCCCCGGTTCCGCCAAACCCGGTCCAAAGCCTCGGGCCGGTTCATTAACCAGCCGGGTCGGACCCTAATCCAGCGCATCGCCTGGCACCTCCTCTCCGTCCTCATCCGCCGCCAAGGCTTCTTCCTCTTCGCTCCTCTTCTCTACATCTCCGGCATGCTCCTCTACATGGGCTCCGGCTCCTTCCCCGACGACCGCCTCCCCATCATCCCCCGCCATTTCGCTCCCGGCTCCCGCTACCGGAGCCCCCAGCTCTACGACAAGCTCCGCCCCGAAATGGACGCCGATAACTCCTCCGCCGATGCGATTTCAACTGTCTGGAAGCATTCGTTCAGTGCGTATAAGGGTGTGGAATGGAGACCCTGTGTAAACACCTCCTCTGGAGTTTTACCCGAGTCAAATGGTTATATATATGTTGAGGCAAATGGTGGTCTAAATCAGCAGAGGACTTCTATATGCAATGCGGTTGCCGTTGCAGGATATCTTAATGCAACACTTCTAATTCCCAATTTTCATTTTCATAGCATCTGGAGAGATCCAAGTAAATTTGGTGACATTTATGATGAAGAATATTTCATCAGTTCGTTGGAAAATGATGTGCGAGTGGTCAACAGGATTCCTGAGTATTTGATGGAACGATTTGATCACAATATGACCAATGTTTACAACTTCAGAATTAAAGCATGGTCGCCAATTTCGTATTATAAGGATGCGGTTCTCCCGAGGCTACTTGAAGAAAAGGTTATACGGATTTCTCCTTTTGCCAATCGGTTGTCATTTGATTCTCCTCCTGCTGTTCAACGACTTAGATGCTTGGCTAATTATAAAGCTTTAAGGTTTTCAAGTCCTATATTAACGTTGGGAGAAACTTTAGTTGCAAGAATGAAAGAACGCAGTGCAAATTACGGTGGCAAATATATTTCTGTGCATCTTCGATTTGAAGAGGACATGGTTGCCTTTTCTTGTTGTGAATTTGATGGTGGAGCGCAAGAAAAGGAAGACATGACAGAAGCAAGGGAAAGGGGTTGGAAAGGGAAATTTAACAAACCTGGGAGGGTTATACGTCCTGGAGCAAACAGGATCAATGGAAAATGTCCCCTCACTCCTTTAGAGGTTGGCTTGATGCTTAGGGGAATGGGATTTGATAAGAACTCATTTATCTACTTGGCATCTGGAAAGATATACGATGCTGAGAGAACAATGGCTCCATTGCTGGAAATGTTTCCGAATTTGATCACAAAACAGATGATTGCTGCAGATGAGGAACTTGCTCCATACAAGAATTATTCTTCCAGGATGGCTGCAATAGATTACACTGTTTGTCTTCACAGTGAGGTATTTGTGACAACTCAAGGAGGAAACTTTCCCCATTTTCTGATGGGACACAGAAGATACTTGTATGGTGGACACTCCAAGACTATTAGGCCTGACAAGCGGAAGTTAGCATTACTCTTTGATAATCCAAAAATTGGGTATATAACATCTTCTTTGCAGTTTATTTTCTTTGACAAATGCACTTTTATGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005794 GO:0007155 GO:0008150 GO:0012505 GO:0022610 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
O-FucT

Protein Analysis

531

Amino Acids

60.66

Weight (kDa)

9.48

Isoelectric Point (pI)

46.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
O-FucT PF10250 159 - 489 6.3e-102 GDP-fucose protein O-fucosyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 774, 894
AccB1I GGYRCC 1 cut(s) 156
AccB7I CCANNNNNTGG 1 cut(s) 1538
AccBSI CCGCTC 1 cut(s) 64
AclI AACGTT 1 cut(s) 926
AclWI GGATC 2 cut(s) 599, 1157
AcsI RAATTY 4 cut(s) 614, 1040, 1106, 1297
AcuI CTGAAG 1 cut(s) 724
AcyI GRCGYC 1 cut(s) 351
AfiI CCNNNNNNNGG 6 cut(s) 29, 108, 238, 309, 346, 1538
AgsI TTSAA 5 cut(s) 381, 803, 869, 912, 1010
AjnI CCWGG 4 cut(s) 152, 1117, 1135, 1361
AloI GAACNNNNNNTCC 2 cut(s) 1258, 1290
AluBI AGCT 3 cut(s) 322, 334, 899
AluI AGCT 3 cut(s) 322, 334, 899
Alw26I GTCTC 1 cut(s) 421
AlwI GGATC 2 cut(s) 599, 1157
Ama87I CYCGRG 3 cut(s) 103, 461, 790
AoxI GGCC 2 cut(s) 106, 1493
ApeKI GCWGC 3 cut(s) 39, 1322, 1370
ApoI RAATTY 4 cut(s) 614, 1040, 1106, 1297
Asp700I GAANNNNTTC 1 cut(s) 1290
AspLEI GCGC 2 cut(s) 147, 1057
AspS9I GGNCC 3 cut(s) 93, 106, 132
AsuC2I CCSGG 4 cut(s) 76, 91, 126, 297
AsuHPI GGTGA 1 cut(s) 632
AvaI CYCGRG 3 cut(s) 103, 461, 790
AvaII GGWCC 2 cut(s) 93, 132
BanI GGYRCC 1 cut(s) 156
BanII GRGCYC 2 cut(s) 245, 317
BbsI GAAGAC 2 cut(s) 1074, 1385
BbvI GCAGC 3 cut(s) 51, 1309, 1357
BccI CCATC 5 cut(s) 281, 694, 1040, 1360, 1441
BceAI ACGGC 1 cut(s) 524
BcgI CGANNNNNNTGC 2 cut(s) 861, 895
BciT130I CCWGG 4 cut(s) 154, 1119, 1137, 1363
BclI TGATCA 2 cut(s) 712, 1302
BcnI CCSGG 4 cut(s) 76, 91, 126, 297
BcoDI GTCTC 1 cut(s) 421
BfmI CTRYAG 1 cut(s) 1323
BglI GCCNNNNNGGC 1 cut(s) 186
BisI GCNGC 6 cut(s) 40, 50, 53, 181, 1323, 1371
BlsI GCNGC 6 cut(s) 41, 51, 54, 182, 1324, 1372
Bme1390I CCNGG 8 cut(s) 76, 91, 126, 154, 297, 1119, 1137, 1363
Bme18I GGWCC 2 cut(s) 93, 132
BmeT110I CYCGRG 3 cut(s) 103, 461, 790
BmgT120I GGNCC 3 cut(s) 93, 106, 132
BmiI GGNNCC 8 cut(s) 80, 134, 158, 244, 250, 301, 314, 1275
BmrFI CCNGG 8 cut(s) 76, 91, 126, 154, 297, 1119, 1137, 1363
BmsI GCATC 9 cut(s) 156, 361, 603, 769, 869, 1006, 1182, 1246, 1247
BpiI GAAGAC 2 cut(s) 1074, 1385
BpmI CTGGAG 3 cut(s) 471, 619, 1158
Bpu10I CCTNAGC 1 cut(s) 1196
BpuEI CTTGAG 1 cut(s) 1404
BpuMI CCSGG 4 cut(s) 76, 91, 126, 297
BsaHI GRCGYC 1 cut(s) 351
BsaI GGTCTC 1 cut(s) 421
BsaJI CCNNGG 5 cut(s) 74, 102, 184, 791, 1118
BsaWI WCCGGW 1 cut(s) 309
BsaXI ACNNNNNCTCC 8 cut(s) 149, 179, 227, 257, 418, 448, 1258, 1288
Bsc4I CCNNNNNNNGG 6 cut(s) 29, 108, 238, 309, 346, 1538
Bse118I RCCGGY 2 cut(s) 15, 108
Bse3DI GCAATG 2 cut(s) 535, 1277
BseBI CCWGG 4 cut(s) 154, 1119, 1137, 1363
BseDI CCNNGG 5 cut(s) 74, 102, 184, 791, 1118
BseGI GGATG 4 cut(s) 174, 276, 784, 1371
BseLI CCNNNNNNNGG 6 cut(s) 29, 108, 238, 309, 346, 1538
BseMI GCAATG 2 cut(s) 535, 1277
BseMII CTCAG 2 cut(s) 681, 1251
BseRI GAGGAG 6 cut(s) 152, 195, 221, 352, 436, 846
BseXI GCAGC 3 cut(s) 51, 1309, 1357
BseYI CCCAGC 1 cut(s) 318
Bsh1285I CGRYCG 1 cut(s) 265
BshFI GGCC 2 cut(s) 108, 1495
BshNI GGYRCC 1 cut(s) 156
BsiEI CGRYCG 1 cut(s) 265
BsiHKCI CYCGRG 3 cut(s) 103, 461, 790
BsiSI CCGG 9 cut(s) 16, 76, 91, 109, 125, 222, 246, 297, 310
BslFI GGGAC 2 cut(s) 1149, 1464
BslI CCNNNNNNNGG 6 cut(s) 29, 108, 238, 309, 346, 1538
BsmAI GTCTC 1 cut(s) 421
BsmFI GGGAC 2 cut(s) 1149, 1464
BsmI GAATGC 2 cut(s) 55, 394
BsnI GGCC 2 cut(s) 108, 1495
Bso31I GGTCTC 1 cut(s) 421
BsoBI CYCGRG 3 cut(s) 103, 461, 790
Bsp1286I GDGCHC 2 cut(s) 245, 317
Bsp143I GATC 4 cut(s) 604, 712, 1149, 1302
BspANI GGCC 2 cut(s) 108, 1495
BspCNI CTCAG 2 cut(s) 682, 1252
BspLI GGNNCC 8 cut(s) 80, 134, 158, 244, 250, 301, 314, 1275
BspMAI CTGCAG 1 cut(s) 1327
BspPI GGATC 2 cut(s) 599, 1157
BspT107I GGYRCC 1 cut(s) 156
BspTNI GGTCTC 1 cut(s) 421
BsrBI CCGCTC 1 cut(s) 64
BsrDI GCAATG 2 cut(s) 535, 1277
BsrFI RCCGGY 2 cut(s) 15, 108
BssAI RCCGGY 2 cut(s) 15, 108
BssECI CCNNGG 5 cut(s) 74, 102, 184, 791, 1118
BssMI GATC 4 cut(s) 604, 712, 1149, 1302
BssNI GRCGYC 1 cut(s) 351
BssT1I CCWWGG 1 cut(s) 184
Bst2UI CCWGG 4 cut(s) 154, 1119, 1137, 1363
Bst4CI ACNGT 4 cut(s) 385, 977, 1387, 1400
Bst6I CTCTTC 3 cut(s) 203, 213, 1005
BstACI GRCGYC 1 cut(s) 351
BstC8I GCNNGC 1 cut(s) 227
BstDEI CTNAG 4 cut(s) 690, 875, 1196, 1260
BstF5I GGATG 4 cut(s) 174, 276, 784, 1371
BstHHI GCGC 2 cut(s) 147, 1057
BstKTI GATC 4 cut(s) 607, 715, 1152, 1305
BstMAI GTCTC 1 cut(s) 421
BstMBI GATC 4 cut(s) 604, 712, 1149, 1302
BstMCI CGRYCG 1 cut(s) 265
BstMWI GCNNNNNNNGC 5 cut(s) 36, 61, 186, 312, 1501
BstNI CCWGG 4 cut(s) 154, 1119, 1137, 1363
BstNSI RCATGY 1 cut(s) 229
BstSCI CCNGG 8 cut(s) 74, 89, 124, 152, 295, 1117, 1135, 1361
BstSFI CTRYAG 1 cut(s) 1323
BstV1I GCAGC 3 cut(s) 51, 1309, 1357
BstV2I GAAGAC 2 cut(s) 1074, 1385
BstX2I RGATCY 1 cut(s) 604
BstYI RGATCY 1 cut(s) 604
BsuRI GGCC 2 cut(s) 108, 1495
BtgZI GCGATG 1 cut(s) 133
BtsCI GGATG 4 cut(s) 174, 276, 784, 1371
BtsI GCAGTG 1 cut(s) 970
BtsIMutI CAGTG 4 cut(s) 409, 970, 1383, 1405
Cac8I GCNNGC 1 cut(s) 227
CfoI GCGC 2 cut(s) 147, 1057
Cfr10I RCCGGY 2 cut(s) 15, 108
Cfr13I GGNCC 3 cut(s) 93, 106, 132
CseI GACGC 1 cut(s) 359
CviAII CATG 5 cut(s) 226, 238, 753, 1018, 1072
DdeI CTNAG 4 cut(s) 690, 875, 1196, 1260
DpnI GATC 4 cut(s) 606, 714, 1151, 1304
DpnII GATC 4 cut(s) 604, 712, 1149, 1302
Eam1104I CTCTTC 3 cut(s) 203, 213, 1005
EarI CTCTTC 3 cut(s) 203, 213, 1005
EciI GGCGGA 4 cut(s) 71, 167, 326, 355
Eco130I CCWWGG 1 cut(s) 184
Eco147I AGGCCT 1 cut(s) 1495
Eco24I GRGCYC 2 cut(s) 245, 317
Eco31I GGTCTC 1 cut(s) 421
Eco32I GATATC 1 cut(s) 551
Eco47I GGWCC 2 cut(s) 93, 132
Eco57I CTGAAG 1 cut(s) 724
Eco88I CYCGRG 3 cut(s) 103, 461, 790
EcoRII CCWGG 4 cut(s) 152, 1117, 1135, 1361
EcoRV GATATC 1 cut(s) 551
EcoT14I CCWWGG 1 cut(s) 184
EcoT38I GRGCYC 2 cut(s) 245, 317
ErhI CCWWGG 1 cut(s) 184
FaeI CATG 5 cut(s) 229, 241, 756, 1021, 1075
FaqI GGGAC 2 cut(s) 1149, 1464
FatI CATG 5 cut(s) 225, 237, 752, 1017, 1071
FauI CCCGC 3 cut(s) 69, 290, 311
FbaI TGATCA 2 cut(s) 712, 1302
Fnu4HI GCNGC 6 cut(s) 40, 50, 53, 181, 1323, 1371
FokI GGATG 4 cut(s) 161, 263, 791, 1378
FriOI GRGCYC 2 cut(s) 245, 317
Fsp4HI GCNGC 6 cut(s) 40, 50, 53, 181, 1323, 1371
GlaI GCGC 2 cut(s) 146, 1056
GluI GCNGC 6 cut(s) 40, 50, 53, 181, 1323, 1371
GsaI CCCAGC 1 cut(s) 322
GsuI CTGGAG 3 cut(s) 471, 619, 1158
HaeIII GGCC 2 cut(s) 108, 1495
HapII CCGG 9 cut(s) 16, 76, 91, 109, 125, 222, 246, 297, 310
HgaI GACGC 1 cut(s) 359
HhaI GCGC 2 cut(s) 147, 1057
Hin1I GRCGYC 1 cut(s) 351
Hin1II CATG 5 cut(s) 229, 241, 756, 1021, 1075
Hin6I GCGC 2 cut(s) 145, 1055
HinP1I GCGC 2 cut(s) 145, 1055
HincII GTYRAC 1 cut(s) 679
HindII GTYRAC 1 cut(s) 679
HindIII AAGCTT 1 cut(s) 897
HinfI GANTC 3 cut(s) 464, 685, 851
HpaII CCGG 9 cut(s) 16, 76, 91, 109, 125, 222, 246, 297, 310
HphI GGTGA 1 cut(s) 632
Hpy166II GTNNAC 4 cut(s) 439, 679, 733, 1475
Hpy188I TCNGA 4 cut(s) 132, 743, 1296, 1446
Hpy188III TCNNGA 6 cut(s) 388, 450, 598, 689, 790, 1242
Hpy8I GTNNAC 4 cut(s) 439, 679, 733, 1475
Hpy99I CGWCG 2 cut(s) 49, 263
HpyAV CCTTC 1 cut(s) 262
HpyCH4III ACNGT 4 cut(s) 385, 977, 1387, 1400
HpyCH4IV ACGT 2 cut(s) 926, 1132
HpyF10VI GCNNNNNNNGC 5 cut(s) 36, 61, 186, 312, 1501
HpyF3I CTNAG 4 cut(s) 690, 875, 1196, 1260
HpySE526I ACGT 2 cut(s) 926, 1132
Hsp92I GRCGYC 1 cut(s) 351
Hsp92II CATG 5 cut(s) 229, 241, 756, 1021, 1075
HspAI GCGC 2 cut(s) 145, 1055
Ksp22I TGATCA 2 cut(s) 712, 1302
Kzo9I GATC 4 cut(s) 604, 712, 1149, 1302
Lsp1109I GCAGC 3 cut(s) 51, 1309, 1357
LweI GCATC 9 cut(s) 156, 361, 603, 769, 869, 1006, 1182, 1246, 1247
MaeII ACGT 2 cut(s) 926, 1132
MaeIII GTNAC 2 cut(s) 620, 1411
MalI GATC 4 cut(s) 606, 714, 1151, 1304
MbiI CCGCTC 1 cut(s) 64
MboI GATC 4 cut(s) 604, 712, 1149, 1302
MflI RGATCY 1 cut(s) 604
MhlI GDGCHC 2 cut(s) 245, 317
MlyI GAGTC 1 cut(s) 473
MmeI TCCRAC 3 cut(s) 110, 636, 1076
MroXI GAANNNNTTC 1 cut(s) 1290
MseI TTAA 6 cut(s) 117, 555, 747, 902, 923, 1110
MslI CAYNNNNRTG 1 cut(s) 1589
MspI CCGG 9 cut(s) 16, 76, 91, 109, 125, 222, 246, 297, 310
MspR9I CCNGG 8 cut(s) 76, 91, 126, 154, 297, 1119, 1137, 1363
Mva1269I GAATGC 2 cut(s) 55, 394
MvaI CCWGG 4 cut(s) 154, 1119, 1137, 1363
MwoI GCNNNNNNNGC 5 cut(s) 36, 61, 186, 312, 1501
NciI CCSGG 4 cut(s) 76, 91, 126, 297
NdeII GATC 4 cut(s) 604, 712, 1149, 1302
NlaIII CATG 5 cut(s) 229, 241, 756, 1021, 1075
NlaIV GGNNCC 8 cut(s) 80, 134, 158, 244, 250, 301, 314, 1275
NmuCI GTSAC 2 cut(s) 620, 1411
NspI RCATGY 1 cut(s) 229
PaeI GCATGC 1 cut(s) 229
PceI AGGCCT 1 cut(s) 1495
PcsI WCGNNNNNNNCGW 2 cut(s) 404, 764
PctI GAATGC 2 cut(s) 55, 394
PdmI GAANNNNTTC 1 cut(s) 1290
PfeI GAWTC 2 cut(s) 685, 851
PflMI CCANNNNNTGG 1 cut(s) 1538
PfoI TCCNGGA 2 cut(s) 1135, 1361
PkrI GCNGC 6 cut(s) 41, 51, 54, 182, 1324, 1372
PleI GAGTC 1 cut(s) 472
PpsI GAGTC 1 cut(s) 472
PsiI TTATAA 2 cut(s) 774, 894
Psp1406I AACGTT 1 cut(s) 926
Psp6I CCWGG 4 cut(s) 152, 1117, 1135, 1361
PspFI CCCAGC 1 cut(s) 318
PspGI CCWGG 4 cut(s) 152, 1117, 1135, 1361
PspN4I GGNNCC 8 cut(s) 80, 134, 158, 244, 250, 301, 314, 1275
PspPI GGNCC 3 cut(s) 93, 106, 132
PstI CTGCAG 1 cut(s) 1327
PsuI RGATCY 1 cut(s) 604
RseI CAYNNNNRTG 1 cut(s) 1589
SaqAI TTAA 6 cut(s) 117, 555, 747, 902, 923, 1110
SatI GCNGC 6 cut(s) 40, 50, 53, 181, 1323, 1371
Sau3AI GATC 4 cut(s) 604, 712, 1149, 1302
Sau96I GGNCC 3 cut(s) 93, 106, 132
SchI GAGTC 1 cut(s) 473
ScrFI CCNGG 8 cut(s) 76, 91, 126, 154, 297, 1119, 1137, 1363
SduI GDGCHC 2 cut(s) 245, 317
SfaNI GCATC 9 cut(s) 156, 361, 603, 769, 869, 1006, 1182, 1246, 1247
SfcI CTRYAG 1 cut(s) 1323
SinI GGWCC 2 cut(s) 93, 132
SmiMI CAYNNNNRTG 1 cut(s) 1589
SmlI CTYRAG 1 cut(s) 1419
SmoI CTYRAG 1 cut(s) 1419
SphI GCATGC 1 cut(s) 229
SseBI AGGCCT 1 cut(s) 1495
SspI AATATT 1 cut(s) 641
StuI AGGCCT 1 cut(s) 1495
StyD4I CCNGG 8 cut(s) 74, 89, 124, 152, 295, 1117, 1135, 1361
StyI CCWWGG 1 cut(s) 184
TaaI ACNGT 4 cut(s) 385, 977, 1387, 1400
TaiI ACGT 2 cut(s) 929, 1135
TaqI TCGA 1 cut(s) 1003
TauI GCSGC 3 cut(s) 52, 55, 183
TfiI GAWTC 2 cut(s) 685, 851
Tru1I TTAA 6 cut(s) 117, 555, 747, 902, 923, 1110
Tru9I TTAA 6 cut(s) 117, 555, 747, 902, 923, 1110
TscAI CASTG 4 cut(s) 409, 970, 1390, 1405
TseFI GTSAC 2 cut(s) 620, 1411
TseI GCWGC 3 cut(s) 39, 1322, 1370
Tsp45I GTSAC 2 cut(s) 620, 1411
TspDTI ATGAA 6 cut(s) 103, 572, 578, 634, 648, 968
TspGWI ACGGA 3 cut(s) 56, 157, 832
TspRI CASTG 4 cut(s) 409, 970, 1390, 1405
Van91I CCANNNNNTGG 1 cut(s) 1538
VpaK11BI GGWCC 2 cut(s) 93, 132
XapI RAATTY 4 cut(s) 614, 1040, 1106, 1297
XceI RCATGY 1 cut(s) 229
XmnI GAANNNNTTC 1 cut(s) 1290
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.