Rh5AG035800

UDP-3-O-acylglucosamine N-acyltransferase 2

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
Physical Location & Seq
Forward (+)
2435532 .. 2436563
1032 bp
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UTR
Exon/CDS
Intron
Rh5AG035800.1

Sequence Viewer

Length: 342 bp
ATGGTGGACAAGCATGGGAATATGTTAAAGAAGCCTCAGATGGTGAATGCTAGGATAGGGAACTGTGTGGAGATTGGTGCAAATACACGCATTGACAGGGGTAGTTGGAGAGATACAGTTGTAGGAGATCATTCAAAGATTGATAATTTAGTTCAGATTGGTCATAATGTAGTTATTGGGGAGAATTGCATGCTTTGTGGTCAAGTTGGGATTGCAGGCTCAGTGACGGTAGGAGACTATGTGATTATGGGAGGAAGGGTAGCAGTTCATGACCATGTCTCCATTGTATCAAAGGTACGGCTTGCTGCTACTGGCTGTGTCACAACTCACAAGGGACATTAA

Protein Analysis

113

Amino Acids

12.03

Weight (kDa)

8.82

Isoelectric Point (pI)

-0.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LbH_EIF2B PF25084 7 - 81 9.5e-06 EIF2B subunit epsilon LbH domain
Hexapep PF00132 38 - 73 1.4e-08 Bacterial transferase hexapeptide (six repeats)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0021032)

Species Orthologous Gene IDs
fragaria_vesca FvH4_3g02750
rosa_multiflora Rmu_sc0000547.1_g000006 Rmu_sc0021254.1_g000001
rosa_samantha Rh5AG035800 Rh5CG038500

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfaI GTAC 1 cut(s) 297
AgsI TTSAA 1 cut(s) 135
Alw26I GTCTC 2 cut(s) 228, 283
ApeKI GCWGC 1 cut(s) 305
AsuHPI GGTGA 1 cut(s) 55
BaeI ACNNNNGTAYC 2 cut(s) 105, 138
BbvI GCAGC 1 cut(s) 292
BccI CCATC 1 cut(s) 34
BceAI ACGGC 1 cut(s) 314
BcoDI GTCTC 2 cut(s) 228, 283
BfaI CTAG 1 cut(s) 51
BisI GCNGC 1 cut(s) 306
BlsI GCNGC 1 cut(s) 307
BsaXI ACNNNNNCTCC 6 cut(s) 225, 243, 255, 263, 273, 293
Bse1I ACTGG 1 cut(s) 316
BseMII CTCAG 2 cut(s) 50, 234
BseNI ACTGG 1 cut(s) 316
BseXI GCAGC 1 cut(s) 292
BsmAI GTCTC 2 cut(s) 228, 283
BsmI GAATGC 1 cut(s) 52
Bsp143I GATC 1 cut(s) 127
BspCNI CTCAG 2 cut(s) 49, 233
BspHI TCATGA 1 cut(s) 268
BsrI ACTGG 1 cut(s) 316
BssMI GATC 1 cut(s) 127
Bst4CI ACNGT 3 cut(s) 65, 118, 229
BstC8I GCNNGC 3 cut(s) 191, 217, 303
BstDEI CTNAG 2 cut(s) 36, 220
BstKTI GATC 1 cut(s) 130
BstMAI GTCTC 2 cut(s) 228, 283
BstMBI GATC 1 cut(s) 127
BstNSI RCATGY 1 cut(s) 193
BstV1I GCAGC 1 cut(s) 292
BtsIMutI CAGTG 1 cut(s) 228
Cac8I GCNNGC 3 cut(s) 191, 217, 303
CciI TCATGA 1 cut(s) 268
Csp6I GTAC 1 cut(s) 296
CviAII CATG 4 cut(s) 14, 190, 269, 275
CviJI RGCY 4 cut(s) 34, 219, 301, 315
CviKI_1 RGCY 4 cut(s) 34, 219, 301, 315
CviQI GTAC 1 cut(s) 296
DdeI CTNAG 2 cut(s) 36, 220
DpnI GATC 1 cut(s) 129
DpnII GATC 1 cut(s) 127
FaeI CATG 4 cut(s) 17, 193, 272, 278
FaiI YATR 8 cut(s) 15, 23, 165, 191, 240, 248, 270, 276
FatI CATG 4 cut(s) 13, 189, 268, 274
Fnu4HI GCNGC 1 cut(s) 306
Fsp4HI GCNGC 1 cut(s) 306
FspBI CTAG 1 cut(s) 51
GluI GCNGC 1 cut(s) 306
Hin1II CATG 4 cut(s) 17, 193, 272, 278
HphI GGTGA 1 cut(s) 55
Hpy166II GTNNAC 1 cut(s) 7
Hpy188I TCNGA 2 cut(s) 39, 156
Hpy188III TCNNGA 1 cut(s) 269
Hpy8I GTNNAC 1 cut(s) 7
HpyAV CCTTC 1 cut(s) 249
HpyCH4III ACNGT 3 cut(s) 65, 118, 229
HpyCH4V TGCA 3 cut(s) 80, 189, 215
HpyF3I CTNAG 2 cut(s) 36, 220
Hsp92II CATG 4 cut(s) 17, 193, 272, 278
Kzo9I GATC 1 cut(s) 127
LpnPI CCDG 3 cut(s) 82, 201, 297
Lsp1109I GCAGC 1 cut(s) 292
MaeI CTAG 1 cut(s) 51
MaeIII GTNAC 2 cut(s) 223, 319
MalI GATC 1 cut(s) 129
MboI GATC 1 cut(s) 127
MluCI AATT 2 cut(s) 145, 184
MmeI TCCRAC 1 cut(s) 86
MnlI CCTC 2 cut(s) 45, 245
MseI TTAA 2 cut(s) 26, 340
MslI CAYNNNNRTG 1 cut(s) 273
Mva1269I GAATGC 1 cut(s) 52
NdeII GATC 1 cut(s) 127
NlaIII CATG 4 cut(s) 17, 193, 272, 278
NmuCI GTSAC 2 cut(s) 223, 319
NspI RCATGY 1 cut(s) 193
PaeI GCATGC 1 cut(s) 193
PagI TCATGA 1 cut(s) 268
PctI GAATGC 1 cut(s) 52
PflFI GACNNNGTC 1 cut(s) 275
PkrI GCNGC 1 cut(s) 307
PsyI GACNNNGTC 1 cut(s) 275
RsaI GTAC 1 cut(s) 297
RsaNI GTAC 1 cut(s) 296
RseI CAYNNNNRTG 1 cut(s) 273
SaqAI TTAA 2 cut(s) 26, 340
SatI GCNGC 1 cut(s) 306
Sau3AI GATC 1 cut(s) 127
SetI ASST 1 cut(s) 297
SmiMI CAYNNNNRTG 1 cut(s) 273
SphI GCATGC 1 cut(s) 193
Sse9I AATT 2 cut(s) 145, 184
SspMI CTAG 1 cut(s) 51
TaaI ACNGT 3 cut(s) 65, 118, 229
TasI AATT 2 cut(s) 145, 184
Tru1I TTAA 2 cut(s) 26, 340
Tru9I TTAA 2 cut(s) 26, 340
TscAI CASTG 1 cut(s) 228
TseFI GTSAC 2 cut(s) 223, 319
TseI GCWGC 1 cut(s) 305
Tsp45I GTSAC 2 cut(s) 223, 319
TspDTI ATGAA 1 cut(s) 257
TspRI CASTG 1 cut(s) 228
Tth111I GACNNNGTC 1 cut(s) 275
XceI RCATGY 1 cut(s) 193
XspI CTAG 1 cut(s) 51
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.