Rh5AG121800

Domain found in Dishevelled, Egl-10, and Pleckstrin (DEP)

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5A
Physical Location & Seq
Forward (+)
11378841 .. 11379155
315 bp
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UTR
Exon/CDS
Intron
Rh5AG121800.1

Sequence Viewer

Length: 315 bp
ATGTTCTTCAACTACGGTGAGTTTGACAAGTTGTTGAAGGAGATGATTGGGTCGAAATGCCTTGACGACGTGCCAGCTTCTCCTGTTTACGGGTTTGATGATCTCGAGGAGGAACTGACAGATCAGATGATAGGGATCGTGAGGGTGTTGAGGTTGAGATTGCCGATTCTGGACCGTCTGATGAAGATTGTGAAGACTTCTCCAATCAGCCAAAAATGTTCAAAATGGTTGTTTTTGGCTTATCCAATCAGCCATAAATATATGTCTATCAAACATGGTATTGGAAAGCTGCAAGACTTCTCCAATCTTATCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

104

Amino Acids

12.04

Weight (kDa)

7.75

Isoelectric Point (pI)

46.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0024683)

Species Orthologous Gene IDs
pyrus_communis pycom12g13670
rosa_samantha Rh2DG672400 Rh5AG121800

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 143
AfiI CCNNNNNNNGG 1 cut(s) 89
AgsI TTSAA 3 cut(s) 10, 37, 222
AjiI CACGTC 1 cut(s) 70
AluBI AGCT 2 cut(s) 77, 289
AluI AGCT 2 cut(s) 77, 289
AlwI GGATC 1 cut(s) 143
Ama87I CYCGRG 1 cut(s) 104
ApeKI GCWGC 1 cut(s) 289
AspS9I GGNCC 1 cut(s) 172
AsuHPI GGTGA 1 cut(s) 29
AvaI CYCGRG 1 cut(s) 104
AvaII GGWCC 1 cut(s) 172
BbsI GAAGAC 1 cut(s) 200
BbvI GCAGC 1 cut(s) 276
BisI GCNGC 1 cut(s) 290
BlsI GCNGC 1 cut(s) 291
Bme18I GGWCC 1 cut(s) 172
BmeT110I CYCGRG 1 cut(s) 104
BmgBI CACGTC 1 cut(s) 70
BmgT120I GGNCC 1 cut(s) 172
BpiI GAAGAC 1 cut(s) 200
BsaBI GATNNNNATC 1 cut(s) 134
Bsc4I CCNNNNNNNGG 1 cut(s) 89
Bse8I GATNNNNATC 1 cut(s) 134
BseJI GATNNNNATC 1 cut(s) 134
BseLI CCNNNNNNNGG 1 cut(s) 89
BseRI GAGGAG 1 cut(s) 122
BseXI GCAGC 1 cut(s) 276
BsiHKCI CYCGRG 1 cut(s) 104
BslI CCNNNNNNNGG 1 cut(s) 89
BsoBI CYCGRG 1 cut(s) 104
Bsp143I GATC 3 cut(s) 100, 121, 135
BspPI GGATC 1 cut(s) 143
BssMI GATC 3 cut(s) 100, 121, 135
Bst4CI ACNGT 2 cut(s) 17, 176
BstC8I GCNNGC 1 cut(s) 75
BstKTI GATC 3 cut(s) 103, 124, 138
BstMBI GATC 3 cut(s) 100, 121, 135
BstV1I GCAGC 1 cut(s) 276
BstV2I GAAGAC 1 cut(s) 200
BtrI CACGTC 1 cut(s) 70
Cac8I GCNNGC 1 cut(s) 75
Cfr13I GGNCC 1 cut(s) 172
CviAII CATG 1 cut(s) 275
CviJI RGCY 5 cut(s) 77, 210, 239, 252, 289
CviKI_1 RGCY 5 cut(s) 77, 210, 239, 252, 289
DpnI GATC 3 cut(s) 102, 123, 137
DpnII GATC 3 cut(s) 100, 121, 135
Eco47I GGWCC 1 cut(s) 172
Eco88I CYCGRG 1 cut(s) 104
FaeI CATG 1 cut(s) 278
FaiI YATR 4 cut(s) 255, 261, 263, 276
FatI CATG 1 cut(s) 274
Fnu4HI GCNGC 1 cut(s) 290
Fsp4HI GCNGC 1 cut(s) 290
GluI GCNGC 1 cut(s) 290
Hin1II CATG 1 cut(s) 278
HinfI GANTC 1 cut(s) 166
HphI GGTGA 1 cut(s) 29
Hpy166II GTNNAC 1 cut(s) 88
Hpy188I TCNGA 2 cut(s) 126, 180
Hpy188III TCNNGA 3 cut(s) 104, 139, 170
Hpy8I GTNNAC 1 cut(s) 88
Hpy99I CGWCG 1 cut(s) 71
HpyAV CCTTC 1 cut(s) 31
HpyCH4III ACNGT 2 cut(s) 17, 176
HpyCH4IV ACGT 1 cut(s) 69
HpyCH4V TGCA 1 cut(s) 292
HpySE526I ACGT 1 cut(s) 69
Hsp92II CATG 1 cut(s) 278
Kzo9I GATC 3 cut(s) 100, 121, 135
LpnPI CCDG 3 cut(s) 87, 96, 155
Lsp1109I GCAGC 1 cut(s) 276
MaeII ACGT 1 cut(s) 69
MalI GATC 3 cut(s) 102, 123, 137
MboI GATC 3 cut(s) 100, 121, 135
MboII GAAGA 2 cut(s) 196, 205
MnlI CCTC 4 cut(s) 100, 103, 135, 144
NdeII GATC 3 cut(s) 100, 121, 135
NlaIII CATG 1 cut(s) 278
PaeR7I CTCGAG 1 cut(s) 104
PfeI GAWTC 1 cut(s) 166
PkrI GCNGC 1 cut(s) 291
PspPI GGNCC 1 cut(s) 172
SatI GCNGC 1 cut(s) 290
Sau3AI GATC 3 cut(s) 100, 121, 135
Sau96I GGNCC 1 cut(s) 172
SetI ASST 4 cut(s) 72, 79, 155, 291
Sfr274I CTCGAG 1 cut(s) 104
SinI GGWCC 1 cut(s) 172
SlaI CTCGAG 1 cut(s) 104
SmlI CTYRAG 1 cut(s) 104
SmoI CTYRAG 1 cut(s) 104
TaaI ACNGT 2 cut(s) 17, 176
TaiI ACGT 1 cut(s) 72
TaqI TCGA 2 cut(s) 53, 105
TfiI GAWTC 1 cut(s) 166
TseI GCWGC 1 cut(s) 289
TspDTI ATGAA 1 cut(s) 197
VpaK11BI GGWCC 1 cut(s) 172
XhoI CTCGAG 1 cut(s) 104
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.