Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0023183

Physical Location & Seq

Genomic Coordinates Forward (+)

24380807 .. 24382734

Gene Structure 1928 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG206100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

ATGACAGACGTGGCCCATATCCAATCCGTCCTCACCGCAATCGGCGACCAACCCAATCACGATTCCGTTGACTCAGCTAAGGCCAAGCTCGCCGGAGTCGTTGACAGCCGTGCTGACGTGACAGAGACAGGGTGGGGGGAATCGGGGGAGAGTGCATGCTATCCTTCAGCTGGAAGAGTTGCAAGCCACATACGTACAAGAAGCTACTCGATCAAGGATGCCGAGGAGAGGCTCGTCAGGATTTATCGGTTGGTGAAGGCCGGAGTGGTGGAAGAGGATAGGAGGTGGATGGCGTCAGCGACCAAGTTTCATTCGGATTCTACAGCAGCCGTTATCCGGGGCTGGGCTGGACCGGGTCAACCTCTCAGATTAAGGCTTACGTTTCTTGCCCGAGGAATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005912 GO:0006810 GO:0007043 GO:0007154 GO:0007163 GO:0007165 GO:0007275 GO:0008104 GO:0008150 GO:0009555 GO:0009653 GO:0009790 GO:0009792 GO:0009887 GO:0009987 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0016323 GO:0022607 GO:0023052 GO:0030011 GO:0030029 GO:0030054 GO:0032501 GO:0032502 GO:0033036 GO:0033043 GO:0034329 GO:0034330 GO:0035088 GO:0035090 GO:0035239 GO:0035295 GO:0042886 GO:0044085 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0045108 GO:0045184 GO:0045197 GO:0045199 GO:0045216 GO:0048229 GO:0048513 GO:0048546 GO:0048557 GO:0048562 GO:0048565 GO:0048566 GO:0048568 GO:0048598 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051179 GO:0051234 GO:0051493 GO:0051716 GO:0055046 GO:0055123 GO:0061245 GO:0065007 GO:0070161 GO:0071702 GO:0071705 GO:0071840 GO:0071944 GO:0098590

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_8

Protein Analysis

133

Amino Acids

14.44

Weight (kDa)

8.89

Isoelectric Point (pI)

53.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0023183)

Species	Orthologous Gene IDs
rosa_roxburghii	Rroxscaffold_1G00050520
rosa_samantha	Rh5AG206100 Rh5CG226600 Rh5DG208200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	36
AcsI	RAATTY	1 cut(s)	396
AcuI	CTGAAG	1 cut(s)	150
AcyI	GRCGYC	1 cut(s)	293
AfaI	GTAC	1 cut(s)	196
AfiI	CCNNNNNNNGG	4 cut(s)	170, 228, 336, 343
AjiI	CACGTC	2 cut(s)	10, 118
AluBI	AGCT	4 cut(s)	77, 88, 170, 204
AluI	AGCT	4 cut(s)	77, 88, 170, 204
Alw26I	GTCTC	1 cut(s)	119
Ama87I	CYCGRG	1 cut(s)	390
AoxI	GGCC	3 cut(s)	12, 81, 258
ApeKI	GCWGC	1 cut(s)	326
ApoI	RAATTY	1 cut(s)	396
AspS9I	GGNCC	2 cut(s)	13, 350
AsuC2I	CCSGG	2 cut(s)	338, 354
AsuHPI	GGTGA	2 cut(s)	25, 265
AvaI	CYCGRG	1 cut(s)	390
AvaII	GGWCC	1 cut(s)	350
BbvI	GCAGC	1 cut(s)	338
BccI	CCATC	1 cut(s)	283
BceAI	ACGGC	2 cut(s)	93, 314
BcnI	CCSGG	2 cut(s)	338, 354
BcoDI	GTCTC	1 cut(s)	119
BfmI	CTRYAG	1 cut(s)	321
BisI	GCNGC	1 cut(s)	327
BlsI	GCNGC	1 cut(s)	328
Bme1390I	CCNGG	2 cut(s)	338, 354
Bme18I	GGWCC	1 cut(s)	350
BmeT110I	CYCGRG	1 cut(s)	390
BmgBI	CACGTC	2 cut(s)	10, 118
BmgT120I	GGNCC	2 cut(s)	13, 350
BmrFI	CCNGG	2 cut(s)	338, 354
BmsI	GCATC	1 cut(s)	208
Bpu10I	CCTNAGC	1 cut(s)	78
BpuMI	CCSGG	2 cut(s)	338, 354
BsaAI	YACGTR	1 cut(s)	194
BsaHI	GRCGYC	1 cut(s)	293
BsaJI	CCNNGG	3 cut(s)	222, 337, 391
Bsc4I	CCNNNNNNNGG	4 cut(s)	170, 228, 336, 343
BseDI	CCNNGG	3 cut(s)	222, 337, 391
BseGI	GGATG	2 cut(s)	223, 294
BseLI	CCNNNNNNNGG	4 cut(s)	170, 228, 336, 343
BseMII	CTCAG	2 cut(s)	87, 379
BseRI	GAGGAG	1 cut(s)	239
BseXI	GCAGC	1 cut(s)	338
BseYI	CCCAGC	1 cut(s)	342
BshFI	GGCC	3 cut(s)	14, 83, 260
BsiHKCI	CYCGRG	1 cut(s)	390
BsiSI	CCGG	4 cut(s)	93, 261, 337, 353
BslI	CCNNNNNNNGG	4 cut(s)	170, 228, 336, 343
BsmAI	GTCTC	1 cut(s)	119
BsnI	GGCC	3 cut(s)	14, 83, 260
BsoBI	CYCGRG	1 cut(s)	390
Bsp143I	GATC	1 cut(s)	210
BspACI	CCGC	1 cut(s)	36
BspANI	GGCC	3 cut(s)	14, 83, 260
BspCNI	CTCAG	2 cut(s)	86, 378
BssECI	CCNNGG	3 cut(s)	222, 337, 391
BssMI	GATC	1 cut(s)	210
BssNI	GRCGYC	1 cut(s)	293
Bst6I	CTCTTC	2 cut(s)	169, 267
BstACI	GRCGYC	1 cut(s)	293
BstBAI	YACGTR	1 cut(s)	194
BstC8I	GCNNGC	3 cut(s)	90, 157, 184
BstDEI	CTNAG	3 cut(s)	73, 78, 365
BstF5I	GGATG	2 cut(s)	223, 294
BstKTI	GATC	1 cut(s)	213
BstMAI	GTCTC	1 cut(s)	119
BstMBI	GATC	1 cut(s)	210
BstMWI	GCNNNNNNNGC	1 cut(s)	89
BstNSI	RCATGY	1 cut(s)	159
BstSCI	CCNGG	2 cut(s)	336, 352
BstSFI	CTRYAG	1 cut(s)	321
BstSNI	TACGTA	1 cut(s)	194
BstV1I	GCAGC	1 cut(s)	338
BsuRI	GGCC	3 cut(s)	14, 83, 260
BtrI	CACGTC	2 cut(s)	10, 118
BtsCI	GGATG	2 cut(s)	223, 294
Cac8I	GCNNGC	3 cut(s)	90, 157, 184
Cfr13I	GGNCC	2 cut(s)	13, 350
CseI	GACGC	1 cut(s)	282
Csp6I	GTAC	1 cut(s)	195
CviAII	CATG	1 cut(s)	156
CviQI	GTAC	1 cut(s)	195
DdeI	CTNAG	3 cut(s)	73, 78, 365
DpnI	GATC	1 cut(s)	212
DpnII	GATC	1 cut(s)	210
Eam1104I	CTCTTC	2 cut(s)	169, 267
EarI	CTCTTC	2 cut(s)	169, 267
Eco105I	TACGTA	1 cut(s)	194
Eco47I	GGWCC	1 cut(s)	350
Eco57I	CTGAAG	1 cut(s)	150
Eco88I	CYCGRG	1 cut(s)	390
FaeI	CATG	1 cut(s)	159
FaiI	YATR	3 cut(s)	18, 157, 191
FatI	CATG	1 cut(s)	155
Fnu4HI	GCNGC	1 cut(s)	327
FokI	GGATG	2 cut(s)	230, 301
Fsp4HI	GCNGC	1 cut(s)	327
GluI	GCNGC	1 cut(s)	327
GsaI	CCCAGC	1 cut(s)	346
HaeIII	GGCC	3 cut(s)	14, 83, 260
HapII	CCGG	4 cut(s)	93, 261, 337, 353
HgaI	GACGC	1 cut(s)	282
Hin1I	GRCGYC	1 cut(s)	293
Hin1II	CATG	1 cut(s)	159
HincII	GTYRAC	3 cut(s)	70, 103, 359
HindII	GTYRAC	3 cut(s)	70, 103, 359
HinfI	GANTC	5 cut(s)	62, 71, 96, 140, 317
HpaII	CCGG	4 cut(s)	93, 261, 337, 353
HphI	GGTGA	2 cut(s)	25, 265
Hpy166II	GTNNAC	3 cut(s)	70, 103, 359
Hpy188I	TCNGA	2 cut(s)	316, 368
Hpy188III	TCNNGA	2 cut(s)	59, 238
Hpy8I	GTNNAC	3 cut(s)	70, 103, 359
HpyAV	CCTTC	2 cut(s)	174, 250
HpyCH4IV	ACGT	4 cut(s)	9, 117, 193, 380
HpyCH4V	TGCA	2 cut(s)	155, 182
HpyF10VI	GCNNNNNNNGC	1 cut(s)	89
HpyF3I	CTNAG	3 cut(s)	73, 78, 365
HpySE526I	ACGT	4 cut(s)	9, 117, 193, 380
Hsp92I	GRCGYC	1 cut(s)	293
Hsp92II	CATG	1 cut(s)	159
Kzo9I	GATC	1 cut(s)	210
LpnPI	CCDG	9 cut(s)	106, 114, 156, 223, 274, 328, 333, 350, 366
Lsp1109I	GCAGC	1 cut(s)	338
LweI	GCATC	1 cut(s)	208
MaeII	ACGT	4 cut(s)	9, 117, 193, 380
MaeIII	GTNAC	1 cut(s)	118
MalI	GATC	1 cut(s)	212
MboI	GATC	1 cut(s)	210
MboII	GAAGA	2 cut(s)	186, 284
MluCI	AATT	1 cut(s)	396
MlyI	GAGTC	2 cut(s)	65, 105
MnlI	CCTC	7 cut(s)	41, 217, 222, 268, 276, 372, 386
MseI	TTAA	1 cut(s)	371
MspA1I	CMGCKG	1 cut(s)	170
MspI	CCGG	4 cut(s)	93, 261, 337, 353
MspR9I	CCNGG	2 cut(s)	338, 354
MwoI	GCNNNNNNNGC	1 cut(s)	89
NciI	CCSGG	2 cut(s)	338, 354
NdeII	GATC	1 cut(s)	210
NlaIII	CATG	1 cut(s)	159
NmeAIII	GCCGAG	1 cut(s)	247
NmuCI	GTSAC	1 cut(s)	118
NspI	RCATGY	1 cut(s)	159
PaeI	GCATGC	1 cut(s)	159
PcsI	WCGNNNNNNNCGW	1 cut(s)	96
PfeI	GAWTC	3 cut(s)	62, 140, 317
PflFI	GACNNNGTC	1 cut(s)	354
PkrI	GCNGC	1 cut(s)	328
PleI	GAGTC	2 cut(s)	65, 104
PpsI	GAGTC	2 cut(s)	65, 104
Ppu21I	YACGTR	1 cut(s)	194
PspFI	CCCAGC	1 cut(s)	342
PspPI	GGNCC	2 cut(s)	13, 350
PsyI	GACNNNGTC	1 cut(s)	354
PvuII	CAGCTG	1 cut(s)	170
RsaI	GTAC	1 cut(s)	196
RsaNI	GTAC	1 cut(s)	195
SaqAI	TTAA	1 cut(s)	371
SatI	GCNGC	1 cut(s)	327
Sau3AI	GATC	1 cut(s)	210
Sau96I	GGNCC	2 cut(s)	13, 350
SchI	GAGTC	2 cut(s)	65, 105
ScrFI	CCNGG	2 cut(s)	338, 354
SfaNI	GCATC	1 cut(s)	208
SfcI	CTRYAG	1 cut(s)	321
SinI	GGWCC	1 cut(s)	350
SnaBI	TACGTA	1 cut(s)	194
SphI	GCATGC	1 cut(s)	159
Sse9I	AATT	1 cut(s)	396
SsiI	CCGC	1 cut(s)	36
StyD4I	CCNGG	2 cut(s)	336, 352
TaiI	ACGT	4 cut(s)	12, 120, 196, 383
TaqI	TCGA	1 cut(s)	209
TasI	AATT	1 cut(s)	396
TfiI	GAWTC	3 cut(s)	62, 140, 317
Tru1I	TTAA	1 cut(s)	371
Tru9I	TTAA	1 cut(s)	371
TseFI	GTSAC	1 cut(s)	118
TseI	GCWGC	1 cut(s)	326
Tsp45I	GTSAC	1 cut(s)	118
TspDTI	ATGAA	1 cut(s)	299
TspGWI	ACGGA	2 cut(s)	16, 55
Tth111I	GACNNNGTC	1 cut(s)	354
VpaK11BI	GGWCC	1 cut(s)	350
XapI	RAATTY	1 cut(s)	396
XceI	RCATGY	1 cut(s)	159

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.