Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0023183

Physical Location & Seq

Genomic Coordinates Forward (+)

23115452 .. 23116959

Gene Structure 1508 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG226600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 351 bp

ATGCTATCCTTCAGCTGGAAGAGTTGCAAGCCACATACGTACAAGAAGCTACTCGATCAAGGATGCCGAGGAGAGGCTCGTCGGGATTTATCTGTTGGTGAAGGCCGGAGTGGTGGAAGAGGAGGAGGTGGATGGCGTCAGCGACCAAGTTTCATTCGGATTCTACAGCAGCCGTTATCCGGGGCTGGGCTGGACTGGGTCAACCTCTCGGATCAAGGCTTAAGTTTCTTGCCCGAGGAATTTCGCCGGGTCAGTGGATTGCTTCAGCTTGATCTTTTCAACATTGAGCTGCAAATTGATCCCGGGGTCACACCCCCATCAACTCATTGTGCACAGAAACAACTAAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0005912 GO:0006810 GO:0007043 GO:0007154 GO:0007163 GO:0007165 GO:0007275 GO:0008104 GO:0008150 GO:0009555 GO:0009653 GO:0009790 GO:0009792 GO:0009887 GO:0009987 GO:0015031 GO:0015833 GO:0016020 GO:0016043 GO:0016323 GO:0022607 GO:0023052 GO:0030011 GO:0030029 GO:0030054 GO:0032501 GO:0032502 GO:0033036 GO:0033043 GO:0034329 GO:0034330 GO:0035088 GO:0035090 GO:0035239 GO:0035295 GO:0042886 GO:0044085 GO:0044424 GO:0044425 GO:0044459 GO:0044464 GO:0045108 GO:0045184 GO:0045197 GO:0045199 GO:0045216 GO:0048229 GO:0048513 GO:0048546 GO:0048557 GO:0048562 GO:0048565 GO:0048566 GO:0048568 GO:0048598 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051128 GO:0051179 GO:0051234 GO:0051493 GO:0051716 GO:0055046 GO:0055123 GO:0061245 GO:0065007 GO:0070161 GO:0071702 GO:0071705 GO:0071840 GO:0071944 GO:0098590

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

LRR_8

Protein Analysis

116

Amino Acids

12.89

Weight (kDa)

9.3

Isoelectric Point (pI)

61.28

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0023183)

Species	Orthologous Gene IDs
rosa_roxburghii	Rroxscaffold_1G00050520
rosa_samantha	Rh5AG206100 Rh5CG226600 Rh5DG208200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	219, 293
AcsI	RAATTY	1 cut(s)	239
AcuI	CTGAAG	1 cut(s)	248
AcyI	GRCGYC	1 cut(s)	136
AfaI	GTAC	1 cut(s)	41
AfiI	CCNNNNNNNGG	4 cut(s)	15, 73, 179, 186
AflII	CTTAAG	1 cut(s)	220
AgsI	TTSAA	1 cut(s)	280
AluBI	AGCT	4 cut(s)	15, 49, 268, 289
AluI	AGCT	4 cut(s)	15, 49, 268, 289
Alw21I	GWGCWC	1 cut(s)	334
Alw44I	GTGCAC	1 cut(s)	330
AlwI	GGATC	2 cut(s)	219, 293
Ama87I	CYCGRG	2 cut(s)	233, 302
AoxI	GGCC	1 cut(s)	103
ApaLI	GTGCAC	1 cut(s)	330
ApeKI	GCWGC	2 cut(s)	169, 289
ApoI	RAATTY	1 cut(s)	239
AsuC2I	CCSGG	4 cut(s)	181, 248, 303, 304
AsuHPI	GGTGA	1 cut(s)	110
AvaI	CYCGRG	2 cut(s)	233, 302
BaeGI	GKGCMC	1 cut(s)	334
Bbv12I	GWGCWC	1 cut(s)	334
BbvI	GCAGC	2 cut(s)	181, 276
BccI	CCATC	2 cut(s)	126, 325
BceAI	ACGGC	1 cut(s)	157
BcnI	CCSGG	4 cut(s)	181, 248, 303, 304
BfmI	CTRYAG	1 cut(s)	164
BfrI	CTTAAG	1 cut(s)	220
BisI	GCNGC	2 cut(s)	170, 290
BlsI	GCNGC	2 cut(s)	171, 291
Bme1390I	CCNGG	4 cut(s)	181, 248, 303, 304
BmeT110I	CYCGRG	2 cut(s)	233, 302
BmrFI	CCNGG	4 cut(s)	181, 248, 303, 304
BmrI	ACTGGG	1 cut(s)	205
BmsI	GCATC	1 cut(s)	53
BmuI	ACTGGG	1 cut(s)	205
BpuMI	CCSGG	4 cut(s)	181, 248, 303, 304
BsaAI	YACGTR	1 cut(s)	39
BsaHI	GRCGYC	1 cut(s)	136
BsaJI	CCNNGG	5 cut(s)	67, 180, 234, 302, 303
Bsc4I	CCNNNNNNNGG	4 cut(s)	15, 73, 179, 186
Bse1I	ACTGG	1 cut(s)	200
BseDI	CCNNGG	5 cut(s)	67, 180, 234, 302, 303
BseGI	GGATG	2 cut(s)	68, 137
BseLI	CCNNNNNNNGG	4 cut(s)	15, 73, 179, 186
BseNI	ACTGG	1 cut(s)	200
BseRI	GAGGAG	3 cut(s)	84, 135, 138
BseSI	GKGCMC	1 cut(s)	334
BseXI	GCAGC	2 cut(s)	181, 276
BseYI	CCCAGC	1 cut(s)	185
BshFI	GGCC	1 cut(s)	105
BsiHKAI	GWGCWC	1 cut(s)	334
BsiHKCI	CYCGRG	2 cut(s)	233, 302
BsiSI	CCGG	4 cut(s)	106, 180, 247, 303
BslI	CCNNNNNNNGG	4 cut(s)	15, 73, 179, 186
BsnI	GGCC	1 cut(s)	105
BsoBI	CYCGRG	2 cut(s)	233, 302
Bsp1286I	GDGCHC	1 cut(s)	334
Bsp143I	GATC	4 cut(s)	55, 211, 271, 298
BspANI	GGCC	1 cut(s)	105
BspPI	GGATC	2 cut(s)	219, 293
BspTI	CTTAAG	1 cut(s)	220
BsrI	ACTGG	1 cut(s)	200
BssECI	CCNNGG	5 cut(s)	67, 180, 234, 302, 303
BssMI	GATC	4 cut(s)	55, 211, 271, 298
BssNI	GRCGYC	1 cut(s)	136
Bst6I	CTCTTC	2 cut(s)	14, 112
BstACI	GRCGYC	1 cut(s)	136
BstAFI	CTTAAG	1 cut(s)	220
BstBAI	YACGTR	1 cut(s)	39
BstC8I	GCNNGC	1 cut(s)	29
BstF5I	GGATG	2 cut(s)	68, 137
BstKTI	GATC	4 cut(s)	58, 214, 274, 301
BstMBI	GATC	4 cut(s)	55, 211, 271, 298
BstSCI	CCNGG	4 cut(s)	179, 246, 301, 302
BstSFI	CTRYAG	1 cut(s)	164
BstSLI	GKGCMC	1 cut(s)	334
BstSNI	TACGTA	1 cut(s)	39
BstV1I	GCAGC	2 cut(s)	181, 276
BsuRI	GGCC	1 cut(s)	105
BtsCI	GGATG	2 cut(s)	68, 137
BtsIMutI	CAGTG	1 cut(s)	259
Cac8I	GCNNGC	1 cut(s)	29
Cfr9I	CCCGGG	1 cut(s)	302
CseI	GACGC	1 cut(s)	125
Csp6I	GTAC	1 cut(s)	40
CviQI	GTAC	1 cut(s)	40
DpnI	GATC	4 cut(s)	57, 213, 273, 300
DpnII	GATC	4 cut(s)	55, 211, 271, 298
Eam1104I	CTCTTC	2 cut(s)	14, 112
EarI	CTCTTC	2 cut(s)	14, 112
Eco105I	TACGTA	1 cut(s)	39
Eco57I	CTGAAG	1 cut(s)	248
Eco88I	CYCGRG	2 cut(s)	233, 302
FaiI	YATR	1 cut(s)	36
Fnu4HI	GCNGC	2 cut(s)	170, 290
FokI	GGATG	2 cut(s)	75, 144
Fsp4HI	GCNGC	2 cut(s)	170, 290
GluI	GCNGC	2 cut(s)	170, 290
GsaI	CCCAGC	1 cut(s)	189
HaeIII	GGCC	1 cut(s)	105
HapII	CCGG	4 cut(s)	106, 180, 247, 303
HgaI	GACGC	1 cut(s)	125
Hin1I	GRCGYC	1 cut(s)	136
HincII	GTYRAC	1 cut(s)	202
HindII	GTYRAC	1 cut(s)	202
HinfI	GANTC	1 cut(s)	160
HpaII	CCGG	4 cut(s)	106, 180, 247, 303
HphI	GGTGA	1 cut(s)	110
Hpy166II	GTNNAC	2 cut(s)	202, 332
Hpy188I	TCNGA	2 cut(s)	159, 211
Hpy188III	TCNNGA	1 cut(s)	83
Hpy8I	GTNNAC	2 cut(s)	202, 332
Hpy99I	CGWCG	1 cut(s)	84
HpyAV	CCTTC	2 cut(s)	19, 95
HpyCH4IV	ACGT	1 cut(s)	38
HpyCH4V	TGCA	3 cut(s)	27, 292, 332
HpySE526I	ACGT	1 cut(s)	38
Hsp92I	GRCGYC	1 cut(s)	136
Kzo9I	GATC	4 cut(s)	55, 211, 271, 298
LpnPI	CCDG	7 cut(s)	119, 171, 176, 181, 193, 260, 316
Lsp1109I	GCAGC	2 cut(s)	181, 276
LweI	GCATC	1 cut(s)	53
MaeII	ACGT	1 cut(s)	38
MaeIII	GTNAC	1 cut(s)	307
MalI	GATC	4 cut(s)	57, 213, 273, 300
MboI	GATC	4 cut(s)	55, 211, 271, 298
MboII	GAAGA	2 cut(s)	31, 129
MhlI	GDGCHC	1 cut(s)	334
MluCI	AATT	2 cut(s)	239, 294
MnlI	CCTC	7 cut(s)	62, 67, 113, 116, 119, 215, 229
MseI	TTAA	1 cut(s)	221
MspA1I	CMGCKG	1 cut(s)	15
MspCI	CTTAAG	1 cut(s)	220
MspI	CCGG	4 cut(s)	106, 180, 247, 303
MspR9I	CCNGG	4 cut(s)	181, 248, 303, 304
NciI	CCSGG	4 cut(s)	181, 248, 303, 304
NdeII	GATC	4 cut(s)	55, 211, 271, 298
NmeAIII	GCCGAG	1 cut(s)	92
NmuCI	GTSAC	1 cut(s)	307
PfeI	GAWTC	1 cut(s)	160
PflFI	GACNNNGTC	1 cut(s)	197
PkrI	GCNGC	2 cut(s)	171, 291
Ppu21I	YACGTR	1 cut(s)	39
PspFI	CCCAGC	1 cut(s)	185
PsyI	GACNNNGTC	1 cut(s)	197
PvuII	CAGCTG	1 cut(s)	15
RsaI	GTAC	1 cut(s)	41
RsaNI	GTAC	1 cut(s)	40
SaqAI	TTAA	1 cut(s)	221
SatI	GCNGC	2 cut(s)	170, 290
Sau3AI	GATC	4 cut(s)	55, 211, 271, 298
ScrFI	CCNGG	4 cut(s)	181, 248, 303, 304
SduI	GDGCHC	1 cut(s)	334
SetI	ASST	7 cut(s)	17, 41, 51, 130, 207, 270, 291
SfaNI	GCATC	1 cut(s)	53
SfcI	CTRYAG	1 cut(s)	164
SmaI	CCCGGG	1 cut(s)	304
SmlI	CTYRAG	1 cut(s)	220
SmoI	CTYRAG	1 cut(s)	220
SnaBI	TACGTA	1 cut(s)	39
Sse9I	AATT	2 cut(s)	239, 294
StyD4I	CCNGG	4 cut(s)	179, 246, 301, 302
TaiI	ACGT	1 cut(s)	41
TaqI	TCGA	1 cut(s)	54
TasI	AATT	2 cut(s)	239, 294
TfiI	GAWTC	1 cut(s)	160
Tru1I	TTAA	1 cut(s)	221
Tru9I	TTAA	1 cut(s)	221
TscAI	CASTG	1 cut(s)	259
TseFI	GTSAC	1 cut(s)	307
TseI	GCWGC	2 cut(s)	169, 289
Tsp45I	GTSAC	1 cut(s)	307
TspDTI	ATGAA	1 cut(s)	142
TspMI	CCCGGG	1 cut(s)	302
TspRI	CASTG	1 cut(s)	259
Tth111I	GACNNNGTC	1 cut(s)	197
Vha464I	CTTAAG	1 cut(s)	220
VneI	GTGCAC	1 cut(s)	330
XapI	RAATTY	1 cut(s)	239
XmaI	CCCGGG	1 cut(s)	302

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.